Wall clock time and date at job start Sun Mar 29 2020 21:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38619 * 119.86406 * 2 1 4 4 C 1.38582 * 120.54195 * 180.02562 * 3 2 1 5 5 C 1.37773 * 120.27079 * 359.68975 * 4 3 2 6 6 Cl 1.73603 * 120.14208 * 180.30181 * 5 4 3 7 7 C 1.40849 * 119.72273 * 0.56195 * 5 4 3 8 8 C 1.41284 * 120.26446 * 179.74289 * 7 5 4 9 9 H 1.07996 * 119.99428 * 135.04321 * 8 7 5 10 10 C 1.39941 * 119.99980 * 314.76462 * 8 7 5 11 11 N 1.30840 * 119.99856 * 339.72799 * 10 8 7 12 12 Si 1.86797 * 119.99944 * 159.73039 * 10 8 7 13 13 H 1.48506 * 109.47202 * 89.99684 * 12 10 8 14 14 H 1.48496 * 109.47413 * 209.99733 * 12 10 8 15 15 H 1.48507 * 109.47108 * 329.99790 * 12 10 8 16 16 C 1.37737 * 119.86516 * 180.02562 * 2 1 3 17 17 Cl 1.73605 * 120.13956 * 0.02562 * 16 2 1 18 18 H 1.08993 * 109.47412 * 269.98122 * 1 2 3 19 19 H 1.09002 * 109.46920 * 29.98141 * 1 2 3 20 20 H 1.09004 * 109.46858 * 149.98132 * 1 2 3 21 21 H 1.07997 * 119.72716 * 0.02562 * 3 2 1 22 22 H 1.08004 * 119.86179 * 180.02562 * 4 3 2 23 23 H 0.97005 * 120.00079 * 185.65332 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.2021 0.0000 4 6 3.5830 1.2185 -0.0005 5 6 4.2915 0.0369 0.0054 6 17 6.0274 0.0614 0.0126 7 6 3.6017 -1.1910 0.0000 8 6 4.3168 -2.4095 0.0005 9 1 4.0165 -3.2115 0.6584 10 6 5.4106 -2.5792 -0.8558 11 7 5.5410 -1.8150 -1.9098 12 14 6.6842 -3.8969 -0.4941 13 1 6.2860 -5.1653 -1.1558 14 1 8.0066 -3.4626 -1.0116 15 1 6.7727 -4.1105 0.9729 16 6 2.1929 -1.1945 -0.0005 17 17 1.3250 -2.6980 -0.0019 18 1 -0.3634 -0.0003 1.0276 19 1 -0.3633 0.8902 -0.5136 20 1 -0.3633 -0.8899 -0.5141 21 1 1.6506 2.1335 0.0004 22 1 4.1096 2.1615 -0.0001 23 1 6.2523 -1.9850 -2.5471 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369030.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:10 Heat of formation + Delta-G solvation = -22.149953 kcal Electronic energy + Delta-G solvation = -11833.194042 eV Core-core repulsion = 9503.720152 eV Total energy + Delta-G solvation = -2329.473890 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.996 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.71532 -37.03853 -36.53712 -35.55164 -32.93107 -31.62446 -27.55195 -26.90622 -22.84759 -22.10072 -18.91855 -17.44813 -16.90483 -16.28261 -15.56639 -14.79346 -14.53897 -14.31030 -13.65773 -13.45955 -13.13832 -12.92813 -12.72661 -12.51661 -12.40124 -12.07289 -11.85950 -11.49158 -11.28915 -11.11596 -10.49560 -9.20192 -8.89123 -8.58965 -6.38132 0.68358 0.84793 1.38020 1.42368 1.49588 1.69595 2.11889 2.23844 2.73492 3.36181 4.21078 4.42328 4.61780 4.73173 4.91390 5.01792 5.17233 5.33775 5.39450 5.59940 5.73198 5.90797 6.15497 6.42830 6.74792 6.93606 8.40904 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.013477 C = 0.009652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.029395 B = 2077.056179 C = 2900.107994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.063 4.063 3 C -0.205 4.205 4 C -0.092 4.092 5 C -0.101 4.101 6 Cl -0.092 7.092 7 C 0.103 3.897 8 C -0.495 4.495 9 H 0.078 0.922 10 C 0.066 3.934 11 N -0.806 5.806 12 Si 0.947 3.053 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.260 1.260 16 C -0.128 4.128 17 Cl -0.092 7.092 18 H 0.078 0.922 19 H 0.082 0.918 20 H 0.061 0.939 21 H 0.145 0.855 22 H 0.127 0.873 23 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 2.649 2.085 5.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.064 4.064 3 C -0.224 4.224 4 C -0.111 4.111 5 C -0.129 4.129 6 Cl -0.064 7.064 7 C 0.099 3.901 8 C -0.524 4.524 9 H 0.096 0.904 10 C -0.152 4.152 11 N -0.430 5.430 12 Si 0.770 3.230 13 H -0.188 1.188 14 H -0.195 1.195 15 H -0.184 1.184 16 C -0.156 4.156 17 Cl -0.063 7.063 18 H 0.097 0.903 19 H 0.101 0.899 20 H 0.080 0.920 21 H 0.163 0.837 22 H 0.145 0.855 23 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.441 2.605 1.907 4.719 hybrid contribution 0.927 -0.818 -0.095 1.240 sum -2.514 1.787 1.812 3.578 Atomic orbital electron populations 1.20789 0.89380 1.03167 1.02847 1.19854 0.97244 0.91176 0.98146 1.20614 0.92549 0.97002 1.12278 1.20943 0.94725 0.96020 0.99412 1.21069 0.82964 0.94494 1.14331 1.98194 1.12519 1.98674 1.96995 1.17432 0.89952 0.93244 0.89448 1.19320 1.11557 0.99803 1.21727 0.90445 1.26133 0.97702 0.97836 0.93489 1.69817 1.29838 1.35395 1.07978 0.85687 0.78254 0.79028 0.80067 1.18802 1.19502 1.18387 1.21012 0.91504 0.85614 1.17469 1.98198 1.75881 1.34821 1.97447 0.90331 0.89878 0.91965 0.83747 0.85517 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.21 9.61 71.24 0.68 -2.53 14 2 C -0.06 -2.52 5.87 -19.89 -0.12 -2.64 14 3 C -0.21 -7.81 9.70 22.44 0.22 -7.59 14 4 C -0.09 -3.87 9.81 22.24 0.22 -3.65 14 5 C -0.10 -4.90 5.94 22.80 0.14 -4.76 14 6 Cl -0.09 -4.32 25.00 -2.72 -0.07 -4.39 14 7 C 0.10 5.29 5.25 -21.25 -0.11 5.18 14 8 C -0.50 -26.00 7.81 23.43 0.18 -25.82 14 9 H 0.08 4.08 7.75 -2.91 -0.02 4.06 14 10 C 0.07 3.33 3.78 85.25 0.32 3.65 14 11 N -0.81 -41.72 11.21 21.83 0.24 -41.47 14 12 Si 0.95 39.41 29.61 68.60 2.03 41.44 14 13 H -0.26 -10.53 7.11 99.48 0.71 -9.83 14 14 H -0.27 -10.88 7.11 99.48 0.71 -10.18 14 15 H -0.26 -10.74 7.11 99.48 0.71 -10.03 14 16 C -0.13 -5.97 6.37 22.80 0.15 -5.82 14 17 Cl -0.09 -3.89 26.27 -2.72 -0.07 -3.96 14 18 H 0.08 2.14 8.14 -2.39 -0.02 2.12 14 19 H 0.08 2.10 8.08 -2.39 -0.02 2.08 14 20 H 0.06 1.93 6.88 -2.38 -0.02 1.92 14 21 H 0.14 4.36 8.06 -2.91 -0.02 4.34 14 22 H 0.13 4.65 8.06 -2.91 -0.02 4.63 14 23 H 0.29 13.71 8.31 -92.70 -0.77 12.94 14 Total: -1.00 -55.36 232.82 5.04 -50.32 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 1.23 Total: 2.04 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 1.68 Total: -43.98 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.24 Total: -41.47 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Atomic # 17 Polarization: -8.21 SS G_CDS: -0.14 Total: -8.35 kcal Total: -55.36 5.04 -50.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369030.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.174 kcal (2) G-P(sol) polarization free energy of solvation -55.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds