Wall clock time and date at job start Sun Mar 29 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36763 * 120.00178 * 2 1 4 4 H 1.07993 * 120.00114 * 121.88559 * 3 2 1 5 5 C 1.39127 * 119.99476 * 301.88589 * 3 2 1 6 6 N 1.31310 * 120.00660 * 27.70934 * 5 3 2 7 7 Si 1.86806 * 119.99516 * 207.70628 * 5 3 2 8 8 H 1.48502 * 109.46932 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47049 * 120.00165 * 7 5 3 10 10 H 1.48502 * 109.47106 * 240.00188 * 7 5 3 11 11 C 1.34779 * 119.99958 * 179.97438 * 2 1 3 12 12 O 1.21591 * 120.00058 * 180.44641 * 11 2 1 13 13 C 1.47744 * 119.99829 * 0.44972 * 11 2 1 14 14 C 1.39727 * 119.99916 * 135.57240 * 13 11 2 15 15 C 1.37671 * 119.99797 * 180.02562 * 14 13 11 16 16 C 1.39718 * 120.00128 * 0.02566 * 15 14 13 17 17 C 1.43196 * 119.99943 * 179.97438 * 16 15 14 18 18 N 7.58314 * 68.83402 * 180.39597 * 2 1 3 19 19 C 1.39720 * 120.00018 * 0.23185 * 16 15 14 20 20 C 1.37669 * 120.00260 * 359.48746 * 19 16 15 21 21 H 1.09000 * 109.46655 * 293.50490 * 1 2 3 22 22 H 1.08998 * 109.46645 * 53.49852 * 1 2 3 23 23 H 1.08998 * 109.47049 * 173.50022 * 1 2 3 24 24 H 0.96992 * 120.00364 * 179.97438 * 6 5 3 25 25 H 1.08006 * 119.99954 * 0.02562 * 14 13 11 26 26 H 1.08002 * 119.99564 * 179.97438 * 15 14 13 27 27 H 1.08007 * 119.99923 * 179.72683 * 19 16 15 28 28 H 1.07995 * 120.00490 * 180.26091 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1489 1.1844 0.0000 4 1 2.8467 1.4050 0.7941 5 6 1.9455 2.1050 -1.0231 6 7 0.7945 2.1419 -1.6541 7 14 3.3099 3.2887 -1.4992 8 1 4.4979 3.0452 -0.6421 9 1 3.6744 3.0771 -2.9231 10 1 2.8418 4.6853 -1.3104 11 6 2.1389 -1.1672 0.0005 12 8 3.3548 -1.1673 0.0087 13 6 1.4002 -2.4467 -0.0089 14 6 1.8050 -3.4808 -0.8569 15 6 1.1163 -4.6729 -0.8661 16 6 0.0123 -4.8483 -0.0279 17 6 -0.7044 -6.0880 -0.0379 18 7 -1.2730 -7.0714 -0.0489 19 6 -0.3957 -3.8123 0.8160 20 6 0.2964 -2.6223 0.8295 21 1 -0.3632 0.4099 0.9424 22 1 -0.3632 0.6113 -0.8261 23 1 -0.3633 -1.0210 -0.1163 24 1 0.6526 2.7839 -2.3671 25 1 2.6582 -3.3450 -1.5051 26 1 1.4290 -5.4721 -1.5218 27 1 -1.2519 -3.9464 1.4607 28 1 -0.0165 -1.8230 1.4849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049163.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:29 Heat of formation + Delta-G solvation = 17.836936 kcal Electronic energy + Delta-G solvation = -14910.727292 eV Core-core repulsion = 12312.836894 eV Total energy + Delta-G solvation = -2597.890398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.15816 -39.40161 -37.39789 -36.59738 -34.01071 -32.35532 -32.10245 -28.15796 -27.01126 -24.99292 -23.64810 -21.36906 -19.97029 -19.02389 -17.99316 -17.12627 -16.44731 -16.20167 -15.65412 -15.40205 -15.17412 -15.03056 -14.51016 -14.25684 -13.99026 -13.74387 -13.55446 -13.26162 -13.03794 -12.88568 -12.67572 -12.34946 -12.13155 -11.97516 -10.72881 -10.57048 -9.98919 -9.82575 -9.36620 -8.38822 -6.21779 -0.44975 0.37240 1.34666 1.42185 1.54325 1.59977 1.69894 2.19081 2.32893 2.76199 2.82350 2.88209 3.15574 3.88669 3.93919 4.01757 4.28718 4.46397 4.65000 4.75407 4.96643 5.02502 5.14223 5.24830 5.33182 5.45799 5.65635 5.74583 6.28086 6.41992 6.60094 7.13962 7.34797 8.01162 8.56586 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.053618 B = 0.006136 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.092036 B = 4562.155791 C = 4766.721710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.449 5.449 3 C -0.369 4.369 4 H 0.061 0.939 5 C 0.032 3.968 6 N -0.863 5.863 7 Si 0.962 3.038 8 H -0.276 1.276 9 H -0.275 1.275 10 H -0.265 1.265 11 C 0.488 3.512 12 O -0.617 6.617 13 C -0.090 4.090 14 C -0.089 4.089 15 C -0.057 4.057 16 C -0.025 4.025 17 C 0.287 3.713 18 N -0.457 5.457 19 C -0.056 4.056 20 C -0.098 4.098 21 H 0.047 0.953 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.277 0.723 25 H 0.131 0.869 26 H 0.164 0.836 27 H 0.169 0.831 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 -8.237 1.412 9.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.168 5.168 3 C -0.496 4.496 4 H 0.079 0.921 5 C -0.175 4.175 6 N -0.497 5.497 7 Si 0.785 3.215 8 H -0.201 1.201 9 H -0.200 1.200 10 H -0.190 1.190 11 C 0.278 3.722 12 O -0.503 6.503 13 C -0.094 4.094 14 C -0.108 4.108 15 C -0.077 4.077 16 C -0.029 4.029 17 C -0.028 4.028 18 N -0.133 5.133 19 C -0.076 4.076 20 C -0.117 4.117 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.149 0.851 26 H 0.181 0.819 27 H 0.186 0.814 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.127 -9.593 1.252 10.948 hybrid contribution 1.001 1.358 -0.263 1.707 sum -4.126 -8.235 0.989 9.263 Atomic orbital electron populations 1.22551 0.80803 1.02510 1.02643 1.43369 1.06227 1.03914 1.63257 1.19007 1.24846 0.95692 1.10067 0.92108 1.26282 0.97272 0.99452 0.94495 1.69827 1.21128 1.35965 1.22798 0.85413 0.79715 0.77991 0.78331 1.20078 1.19990 1.19011 1.19252 0.87330 0.84957 0.80651 1.90594 1.15596 1.87980 1.56155 1.20385 0.96530 0.93850 0.98607 1.21120 0.99758 0.91878 0.98093 1.21229 0.92488 0.97012 0.96955 1.16076 0.96800 0.88225 1.01802 1.25598 0.92403 0.92360 0.92437 1.81275 1.10362 1.12104 1.09561 1.21304 0.99535 0.90102 0.96702 1.21436 0.93301 0.98470 0.98448 0.93417 0.90405 0.89571 0.91274 0.85105 0.81894 0.81363 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.32 8.92 127.77 1.14 3.46 15 2 N -0.45 -22.33 2.92 -662.33 -1.93 -24.26 15 3 C -0.37 -20.48 8.56 84.14 0.72 -19.77 15 4 H 0.06 3.57 7.97 -2.91 -0.02 3.55 15 5 C 0.03 1.68 5.46 84.98 0.46 2.15 15 6 N -0.86 -44.57 11.22 21.69 0.24 -44.32 15 7 Si 0.96 42.25 29.63 68.60 2.03 44.29 15 8 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 9 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 10 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 11 C 0.49 23.32 7.23 86.76 0.63 23.95 15 12 O -0.62 -34.57 16.94 -4.00 -0.07 -34.64 15 13 C -0.09 -3.10 5.12 -20.04 -0.10 -3.20 15 14 C -0.09 -2.59 9.66 22.50 0.22 -2.37 15 15 C -0.06 -1.19 9.73 22.49 0.22 -0.97 15 16 C -0.03 -0.51 5.73 -21.32 -0.12 -0.63 15 17 C 0.29 6.19 15.32 88.33 1.35 7.55 15 18 N -0.46 -11.83 18.54 19.00 0.35 -11.48 15 19 C -0.06 -1.10 9.73 22.49 0.22 -0.88 15 20 C -0.10 -2.57 7.28 22.50 0.16 -2.40 15 21 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.08 3.57 5.78 -2.39 -0.01 3.55 15 23 H 0.09 2.83 4.33 -2.39 -0.01 2.82 15 24 H 0.28 13.28 8.31 -92.71 -0.77 12.51 15 25 H 0.13 3.94 8.06 -2.91 -0.02 3.92 15 26 H 0.16 2.47 8.06 -2.91 -0.02 2.44 15 27 H 0.17 2.17 8.06 -2.91 -0.02 2.14 15 28 H 0.15 3.69 6.62 -2.91 -0.02 3.67 15 Total: -1.00 -66.98 258.63 6.72 -60.26 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.19 Total: 3.27 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 4.90 Total: 6.88 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -1.34 Total: -80.07 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.07 Total: -34.64 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.29 kcal Total: -66.98 6.72 -60.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049163.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.101 kcal (2) G-P(sol) polarization free energy of solvation -66.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds