Wall clock time and date at job start Sun Mar 29 2020 21:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36867 * 120.00140 * 2 1 4 4 H 1.08000 * 120.00234 * 201.52598 * 3 2 1 5 5 C 1.39049 * 120.00118 * 21.52846 * 3 2 1 6 6 N 1.31364 * 120.00019 * 13.33844 * 5 3 2 7 7 Si 1.86803 * 120.00206 * 193.34154 * 5 3 2 8 8 H 1.48496 * 109.47340 * 89.99823 * 7 5 3 9 9 H 1.48493 * 109.47029 * 209.99913 * 7 5 3 10 10 H 1.48500 * 109.47040 * 329.99724 * 7 5 3 11 11 C 1.34777 * 119.99892 * 180.02562 * 2 1 3 12 12 O 1.21590 * 120.00107 * 184.65700 * 11 2 1 13 13 C 1.47750 * 119.99936 * 4.65943 * 11 2 1 14 14 C 1.39768 * 120.07865 * 318.56883 * 13 11 2 15 15 C 1.38033 * 120.15393 * 180.02562 * 14 13 11 16 16 C 1.38110 * 120.30747 * 359.74718 * 15 14 13 17 17 C 1.39727 * 120.15372 * 0.51101 * 16 15 14 18 18 C 1.43198 * 120.07530 * 179.76776 * 17 16 15 19 19 N 7.05081 * 95.04347 * 200.74412 * 2 1 3 20 20 C 1.39363 * 120.07674 * 138.58855 * 13 11 2 21 21 H 1.08999 * 109.47172 * 264.78704 * 1 2 3 22 22 H 1.08998 * 109.47105 * 24.78556 * 1 2 3 23 23 H 1.09000 * 109.47564 * 144.78405 * 1 2 3 24 24 H 0.96997 * 120.00215 * 180.02562 * 6 5 3 25 25 H 1.07999 * 119.92347 * 0.02562 * 14 13 11 26 26 H 1.07991 * 119.84638 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.92053 * 180.27464 * 16 15 14 28 28 H 1.08003 * 120.15251 * 0.02562 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.1729 1.2179 -0.3432 5 6 1.5269 2.3475 0.4419 6 7 0.3911 2.2756 1.0979 7 14 2.3058 4.0112 0.1027 8 1 1.8093 4.5348 -1.1952 9 1 1.9450 4.9573 1.1888 10 1 3.7824 3.8638 0.0447 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1690 0.0850 13 6 1.4037 -2.4446 -0.1050 14 6 0.2149 -2.6289 0.6065 15 6 -0.4729 -3.8218 0.5104 16 6 0.0049 -4.8390 -0.2924 17 6 1.1949 -4.6706 -1.0051 18 6 1.6913 -5.7283 -1.8330 19 7 2.0848 -6.5682 -2.4877 20 6 1.8943 -3.4687 -0.9130 21 1 -0.3633 -0.0934 1.0234 22 1 -0.3633 0.9330 -0.4308 23 1 -0.3634 -0.8396 -0.5926 24 1 -0.0433 3.0863 1.4058 25 1 -0.1665 -1.8361 1.2329 26 1 -1.3907 -3.9590 1.0626 27 1 -0.5406 -5.7682 -0.3664 28 1 2.8129 -3.3319 -1.4644 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049183.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:32 Heat of formation + Delta-G solvation = 35.029094 kcal Electronic energy + Delta-G solvation = -14943.030260 eV Core-core repulsion = 12345.885370 eV Total energy + Delta-G solvation = -2597.144890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71063 -37.88049 -36.22949 -34.85802 -32.13052 -31.05773 -30.76894 -26.53060 -25.10367 -23.59150 -22.79158 -20.14583 -18.11410 -17.04894 -16.19804 -15.80414 -15.24513 -14.79278 -14.22839 -13.98310 -13.82797 -13.69091 -13.02773 -12.83470 -12.62078 -12.18625 -11.90644 -11.79726 -11.37214 -11.22756 -11.07466 -10.75639 -10.43183 -10.42528 -9.13291 -8.88398 -8.76614 -8.48647 -7.85453 -6.48968 -3.99260 0.86921 1.32767 2.70892 2.93997 3.11867 3.18768 3.24104 3.70755 3.90479 4.05169 4.19898 4.68585 4.95795 5.03970 5.06159 5.34386 5.47192 5.58824 5.86455 6.03886 6.22947 6.35475 6.40802 6.61473 6.70264 6.89045 7.09081 7.42490 7.52378 7.97449 8.33736 9.03317 9.24673 9.82278 10.54771 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.047720 B = 0.006406 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.615462 B = 4370.042363 C = 4783.002747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.427 5.427 3 C -0.304 4.304 4 H 0.103 0.897 5 C 0.032 3.968 6 N -0.874 5.874 7 Si 0.930 3.070 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.267 1.267 11 C 0.469 3.531 12 O -0.585 6.585 13 C -0.091 4.091 14 C -0.070 4.070 15 C -0.128 4.128 16 C -0.071 4.071 17 C -0.045 4.045 18 C 0.266 3.734 19 N -0.432 5.432 20 C -0.031 4.031 21 H 0.055 0.945 22 H 0.081 0.919 23 H 0.034 0.966 24 H 0.271 0.729 25 H 0.144 0.856 26 H 0.134 0.866 27 H 0.129 0.871 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 -6.573 -0.523 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.144 5.144 3 C -0.432 4.432 4 H 0.121 0.879 5 C -0.172 4.172 6 N -0.513 5.513 7 Si 0.756 3.244 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.192 1.192 11 C 0.258 3.742 12 O -0.471 6.471 13 C -0.095 4.095 14 C -0.089 4.089 15 C -0.146 4.146 16 C -0.092 4.092 17 C -0.049 4.049 18 C -0.049 4.049 19 N -0.108 5.108 20 C -0.053 4.053 21 H 0.073 0.927 22 H 0.100 0.900 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.161 0.839 26 H 0.152 0.848 27 H 0.147 0.853 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.302 -7.677 -1.409 9.436 hybrid contribution -0.046 1.205 0.238 1.230 sum -5.348 -6.472 -1.171 8.477 Atomic orbital electron populations 1.21854 0.81075 1.00921 1.00342 1.43522 1.05743 1.04657 1.60446 1.19758 0.99308 0.83374 1.40798 0.87932 1.25393 0.96486 1.00308 0.95058 1.69970 1.17522 1.29676 1.34098 0.85858 0.79780 0.80699 0.78048 1.20179 1.20793 1.19173 1.17860 0.87428 0.82876 0.86017 1.90639 1.13491 1.86509 1.56413 1.20251 0.95404 0.96055 0.97750 1.22030 0.92899 0.97481 0.96532 1.21006 1.00790 0.93013 0.99779 1.21155 0.93734 0.99297 0.94998 1.15869 0.97770 0.90783 1.00438 1.25700 0.93239 0.92925 0.93023 1.81177 1.08602 1.10655 1.10327 1.21227 0.98341 0.90066 0.95672 0.92666 0.90040 0.94782 0.91887 0.83874 0.84839 0.85322 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.08 7.21 59.85 0.43 2.51 15 2 N -0.43 -10.43 3.01 -123.31 -0.37 -10.80 15 3 C -0.30 -8.12 9.27 -15.00 -0.14 -8.26 15 4 H 0.10 2.87 7.44 -52.49 -0.39 2.48 15 5 C 0.03 0.80 5.04 -17.45 -0.09 0.71 15 6 N -0.87 -21.84 10.69 55.50 0.59 -21.24 15 7 Si 0.93 19.76 29.57 -169.99 -5.03 14.73 15 8 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 9 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 10 H -0.27 -5.76 7.11 56.52 0.40 -5.35 15 11 C 0.47 11.11 7.27 -12.37 -0.09 11.02 15 12 O -0.58 -16.01 16.65 5.29 0.09 -15.92 15 13 C -0.09 -1.65 5.15 -105.02 -0.54 -2.19 15 14 C -0.07 -1.03 7.61 -39.08 -0.30 -1.33 15 15 C -0.13 -1.45 10.02 -39.70 -0.40 -1.85 15 16 C -0.07 -0.79 9.75 -39.07 -0.38 -1.17 15 17 C -0.05 -0.61 5.72 -106.99 -0.61 -1.22 15 18 C 0.27 3.80 15.32 -22.50 -0.34 3.46 15 19 N -0.43 -6.88 18.53 41.81 0.77 -6.11 15 20 C -0.03 -0.51 9.35 -38.74 -0.36 -0.87 15 21 H 0.05 1.12 6.63 -51.93 -0.34 0.77 15 22 H 0.08 1.80 6.53 -51.93 -0.34 1.46 15 23 H 0.03 0.59 5.98 -51.93 -0.31 0.28 15 24 H 0.27 6.39 8.31 -40.82 -0.34 6.05 15 25 H 0.14 2.13 5.50 -52.49 -0.29 1.85 15 26 H 0.13 1.10 8.06 -52.49 -0.42 0.67 15 27 H 0.13 1.08 8.06 -52.49 -0.42 0.66 15 28 H 0.14 2.24 8.06 -52.48 -0.42 1.82 15 LS Contribution 256.07 15.07 3.86 3.86 Total: -1.00 -29.86 256.07 -4.98 -34.84 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -2.08 Total: -0.18 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.82 Total: 0.81 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 1.00 Total: -38.15 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.09 Total: -15.92 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.86 -4.98 -34.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049183.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.868 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds