Wall clock time and date at job start Sun Mar 29 2020 21:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39676 * 120.00536 * 260.27896 * 3 2 1 5 5 C 1.37728 * 119.99538 * 179.76927 * 4 3 2 6 6 C 1.39623 * 120.00456 * 0.50586 * 5 4 3 7 7 C 1.47905 * 119.99775 * 179.72183 * 6 5 4 8 8 O 1.21544 * 120.00349 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99982 * 0.02562 * 7 6 5 10 10 C 1.46495 * 120.00339 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47114 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00347 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99892 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00149 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00179 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46961 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46822 * 120.00340 * 15 13 11 18 18 H 1.48496 * 109.47581 * 240.00576 * 15 13 11 19 19 C 1.39630 * 120.01029 * 359.74540 * 6 5 4 20 20 C 1.37725 * 120.00781 * 359.97438 * 19 6 5 21 21 H 1.08007 * 119.99927 * 0.02562 * 4 3 2 22 22 H 1.07995 * 119.99681 * 180.23002 * 5 4 3 23 23 H 0.97005 * 119.99834 * 359.97438 * 9 7 6 24 24 H 1.08997 * 109.47168 * 300.00120 * 10 9 7 25 25 H 1.09008 * 109.46980 * 59.99975 * 10 9 7 26 26 H 0.96995 * 119.99859 * 179.97438 * 14 13 11 27 27 H 1.08002 * 119.99839 * 179.97438 * 19 6 5 28 28 H 1.07994 * 120.00820 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 0.2052 1.1922 5 6 4.6436 0.2010 1.1928 6 6 5.3418 0.0029 -0.0001 7 6 6.8208 0.0046 -0.0003 8 8 7.4286 -0.1674 -1.0387 9 7 7.4947 0.1969 1.1511 10 6 8.9596 0.1980 1.1510 11 6 9.4618 0.4325 2.5524 12 1 8.7599 0.5668 3.3622 13 6 10.8173 0.4745 2.8009 14 7 11.6721 0.3105 1.8149 15 14 11.4399 0.7644 4.5381 16 1 10.2848 0.9168 5.4589 17 1 12.2655 -0.3928 4.9676 18 1 12.2643 1.9992 4.5690 19 6 4.6438 -0.1964 -1.1929 20 6 3.2666 -0.1981 -1.1930 21 1 2.7263 0.3625 2.1142 22 1 5.1836 0.3555 2.1152 23 1 7.0096 0.3345 1.9798 24 1 9.3237 -0.7640 0.7904 25 1 9.3223 0.9918 0.4979 26 1 12.6257 0.3404 1.9897 27 1 5.1840 -0.3492 -2.1155 28 1 2.7268 -0.3518 -2.1157 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151658.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:23 Heat of formation + Delta-G solvation = 10.722368 kcal Electronic energy + Delta-G solvation = -14232.142363 eV Core-core repulsion = 11633.943454 eV Total energy + Delta-G solvation = -2598.198909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.03429 -38.30176 -36.50684 -34.40426 -32.61016 -31.54534 -31.23537 -27.48796 -24.88582 -23.01144 -22.33199 -20.23289 -19.11453 -17.96289 -16.04954 -15.90993 -14.98914 -14.83186 -14.64071 -14.44749 -14.12228 -13.90866 -13.78875 -12.97738 -12.93825 -12.48967 -12.21472 -12.05548 -11.80129 -11.28131 -11.01556 -10.96461 -10.38450 -9.46804 -9.35171 -9.28396 -9.11617 -8.81660 -8.01179 -6.22919 -4.30357 0.30093 1.12153 2.40886 2.49960 3.20033 3.27359 3.29909 3.35630 3.59757 3.85091 3.95299 4.29862 4.59355 4.62627 5.01499 5.13180 5.13704 5.28713 5.44495 5.72275 5.96857 6.01799 6.21834 6.51718 7.20070 7.21497 7.26252 7.42144 7.57181 7.88701 8.46185 8.66893 8.91512 9.36276 10.87200 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.049441 B = 0.004731 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.198048 B = 5917.349612 C = 6468.403219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.258 3.742 3 C -0.021 4.021 4 C -0.076 4.076 5 C -0.091 4.091 6 C -0.088 4.088 7 C 0.533 3.467 8 O -0.546 6.546 9 N -0.701 5.701 10 C 0.247 3.753 11 C -0.545 4.545 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.068 4.068 20 C -0.078 4.078 21 H 0.137 0.863 22 H 0.141 0.859 23 H 0.391 0.609 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.266 0.734 27 H 0.147 0.853 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 -0.178 -1.024 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.057 4.057 3 C -0.025 4.025 4 C -0.096 4.096 5 C -0.110 4.110 6 C -0.092 4.092 7 C 0.318 3.682 8 O -0.425 6.425 9 N -0.349 5.349 10 C 0.127 3.873 11 C -0.583 4.583 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.521 5.521 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.087 4.087 20 C -0.098 4.098 21 H 0.155 0.845 22 H 0.159 0.841 23 H 0.225 0.775 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.165 0.835 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.998 -0.304 -1.781 15.107 hybrid contribution 0.675 0.224 1.349 1.525 sum -14.323 -0.080 -0.431 14.330 Atomic orbital electron populations 1.81250 1.12095 1.08836 1.07450 1.25738 0.92664 0.93626 0.93663 1.16116 0.84206 1.06631 0.95517 1.21093 0.93994 0.97761 0.96797 1.21366 0.93674 0.97842 0.98121 1.20605 0.94747 0.99620 0.94205 1.18245 0.86245 0.78800 0.84897 1.90753 1.69551 1.50437 1.31804 1.46471 1.10662 1.69282 1.08453 1.19206 0.72277 0.98087 0.97726 1.21230 0.92243 1.51792 0.93073 0.91763 1.24955 0.96586 0.94689 0.97772 1.69978 1.02526 1.48225 1.31387 0.86347 0.78930 0.77959 0.83593 1.19606 1.20774 1.20768 1.21262 0.92968 0.95861 0.98579 1.21135 0.93996 0.97938 0.96749 0.84500 0.84150 0.77465 0.95128 0.95131 0.92412 0.83501 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.34 18.54 41.83 0.78 -4.56 15 2 C 0.26 2.72 15.32 -22.47 -0.34 2.38 15 3 C -0.02 -0.20 5.73 -106.90 -0.61 -0.81 15 4 C -0.08 -0.67 9.73 -39.23 -0.38 -1.05 15 5 C -0.09 -0.96 9.52 -39.25 -0.37 -1.33 15 6 C -0.09 -1.18 5.88 -104.90 -0.62 -1.80 15 7 C 0.53 9.92 7.77 -12.30 -0.10 9.82 15 8 O -0.55 -12.28 16.33 5.33 0.09 -12.20 15 9 N -0.70 -13.67 5.50 -62.41 -0.34 -14.02 15 10 C 0.25 6.22 5.43 -5.20 -0.03 6.19 15 11 C -0.55 -14.10 9.28 -34.44 -0.32 -14.42 15 12 H 0.06 1.54 7.60 -52.48 -0.40 1.14 15 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 14 N -0.88 -25.21 13.29 55.43 0.74 -24.48 15 15 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 15 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 19 C -0.07 -0.78 9.58 -39.25 -0.38 -1.16 15 20 C -0.08 -0.71 9.73 -39.23 -0.38 -1.09 15 21 H 0.14 0.90 8.06 -52.48 -0.42 0.47 15 22 H 0.14 1.27 6.39 -52.49 -0.34 0.94 15 23 H 0.39 6.33 6.34 -40.82 -0.26 6.07 15 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.03 0.85 8.14 -51.92 -0.42 0.43 15 26 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 27 H 0.15 1.71 7.64 -52.49 -0.40 1.31 15 28 H 0.14 0.94 8.06 -52.49 -0.42 0.52 15 LS Contribution 266.62 15.07 4.02 4.02 Total: -1.00 -31.25 266.62 -5.59 -36.84 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -2.22 Total: 0.93 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.63 Total: -1.65 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 1.17 Total: -43.06 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.25 -5.59 -36.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151658.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.563 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds