Wall clock time and date at job start Sun Mar 29 2020 21:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39676 * 120.00536 * 260.27896 * 3 2 1 5 5 C 1.37728 * 119.99538 * 179.76927 * 4 3 2 6 6 C 1.39623 * 120.00456 * 0.50586 * 5 4 3 7 7 C 1.47905 * 119.99775 * 179.72183 * 6 5 4 8 8 O 1.21544 * 120.00349 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99982 * 0.02562 * 7 6 5 10 10 C 1.46495 * 120.00339 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47114 * 179.97438 * 10 9 7 12 12 H 1.08003 * 120.00347 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99892 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00149 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00179 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46961 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46822 * 120.00340 * 15 13 11 18 18 H 1.48496 * 109.47581 * 240.00576 * 15 13 11 19 19 C 1.39630 * 120.01029 * 359.74540 * 6 5 4 20 20 C 1.37725 * 120.00781 * 359.97438 * 19 6 5 21 21 H 1.08007 * 119.99927 * 0.02562 * 4 3 2 22 22 H 1.07995 * 119.99681 * 180.23002 * 5 4 3 23 23 H 0.97005 * 119.99834 * 359.97438 * 9 7 6 24 24 H 1.08997 * 109.47168 * 300.00120 * 10 9 7 25 25 H 1.09008 * 109.46980 * 59.99975 * 10 9 7 26 26 H 0.96995 * 119.99859 * 179.97438 * 14 13 11 27 27 H 1.08002 * 119.99839 * 179.97438 * 19 6 5 28 28 H 1.07994 * 120.00820 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 0.2052 1.1922 5 6 4.6436 0.2010 1.1928 6 6 5.3418 0.0029 -0.0001 7 6 6.8208 0.0046 -0.0003 8 8 7.4286 -0.1674 -1.0387 9 7 7.4947 0.1969 1.1511 10 6 8.9596 0.1980 1.1510 11 6 9.4618 0.4325 2.5524 12 1 8.7599 0.5668 3.3622 13 6 10.8173 0.4745 2.8009 14 7 11.6721 0.3105 1.8149 15 14 11.4399 0.7644 4.5381 16 1 10.2848 0.9168 5.4589 17 1 12.2655 -0.3928 4.9676 18 1 12.2643 1.9992 4.5690 19 6 4.6438 -0.1964 -1.1929 20 6 3.2666 -0.1981 -1.1930 21 1 2.7263 0.3625 2.1142 22 1 5.1836 0.3555 2.1152 23 1 7.0096 0.3345 1.9798 24 1 9.3237 -0.7640 0.7904 25 1 9.3223 0.9918 0.4979 26 1 12.6257 0.3404 1.9897 27 1 5.1840 -0.3492 -2.1155 28 1 2.7268 -0.3518 -2.1157 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151658.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:22 Heat of formation + Delta-G solvation = -10.177014 kcal Electronic energy + Delta-G solvation = -14233.048628 eV Core-core repulsion = 11633.943454 eV Total energy + Delta-G solvation = -2599.105174 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.19159 -39.56416 -37.45208 -36.21615 -34.44718 -32.63437 -32.10352 -29.33604 -26.17503 -24.42012 -23.50524 -21.72988 -19.96854 -19.47915 -17.87224 -17.24937 -16.49304 -16.18074 -15.88410 -15.67647 -15.14289 -15.08823 -14.60480 -14.35131 -14.04724 -13.94786 -13.88628 -13.18169 -13.17683 -12.87286 -12.73542 -12.19745 -12.09515 -11.43454 -10.95018 -10.80086 -10.13906 -10.06273 -9.77368 -8.26904 -6.42978 -0.62811 0.33481 1.46857 1.46949 1.48395 1.56770 1.60640 2.24699 2.30241 2.51719 2.75236 2.91548 3.08898 3.77482 3.86196 3.91100 4.23222 4.39584 4.63868 4.98265 5.04588 5.15119 5.21217 5.26147 5.35672 5.46900 5.64980 5.72425 5.86082 6.38297 6.67110 6.85090 7.24564 7.41770 8.85346 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.049441 B = 0.004731 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.198048 B = 5917.349612 C = 6468.403219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.282 3.718 3 C -0.011 4.011 4 C -0.060 4.060 5 C -0.083 4.083 6 C -0.109 4.109 7 C 0.533 3.467 8 O -0.595 6.595 9 N -0.697 5.697 10 C 0.263 3.737 11 C -0.553 4.553 12 H 0.087 0.913 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.984 3.016 16 H -0.251 1.251 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.073 4.073 20 C -0.063 4.063 21 H 0.169 0.831 22 H 0.156 0.844 23 H 0.410 0.590 24 H -0.008 1.008 25 H -0.008 1.008 26 H 0.268 0.732 27 H 0.139 0.861 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.124 0.161 1.012 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.032 4.032 3 C -0.015 4.015 4 C -0.081 4.081 5 C -0.102 4.102 6 C -0.112 4.112 7 C 0.321 3.679 8 O -0.478 6.478 9 N -0.346 5.346 10 C 0.141 3.859 11 C -0.591 4.591 12 H 0.105 0.895 13 C -0.196 4.196 14 N -0.569 5.569 15 Si 0.807 3.193 16 H -0.174 1.174 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.092 4.092 20 C -0.084 4.084 21 H 0.187 0.813 22 H 0.174 0.826 23 H 0.247 0.753 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.077 0.923 27 H 0.157 0.843 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.250 0.039 0.277 17.252 hybrid contribution 1.260 0.105 0.634 1.414 sum -15.990 0.144 0.912 16.017 Atomic orbital electron populations 1.81299 1.13169 1.09974 1.08588 1.25669 0.92441 0.92558 0.92579 1.16176 0.83596 1.05854 0.95860 1.21353 0.93090 0.95814 0.97797 1.21470 0.94408 0.96940 0.97353 1.20197 0.91071 1.03476 0.96499 1.19040 0.88586 0.76753 0.83543 1.90718 1.71291 1.52345 1.33400 1.46142 1.08500 1.69976 1.10012 1.18633 0.75630 0.94610 0.97065 1.21642 0.92924 1.51023 0.93528 0.89480 1.26050 0.96949 0.94203 1.02447 1.70139 1.02963 1.49617 1.34191 0.85124 0.78652 0.77523 0.77999 1.17402 1.20695 1.20683 1.21238 0.93964 0.96249 0.97703 1.21281 0.92749 0.96390 0.97931 0.81322 0.82636 0.75280 0.98996 0.99002 0.92304 0.84349 0.81896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.33 18.54 19.00 0.35 -9.98 15 2 C 0.28 4.99 15.32 88.33 1.35 6.35 15 3 C -0.01 -0.17 5.73 -21.34 -0.12 -0.29 15 4 C -0.06 -0.81 9.73 22.50 0.22 -0.59 15 5 C -0.08 -1.50 9.52 22.48 0.21 -1.28 15 6 C -0.11 -2.81 5.88 -20.05 -0.12 -2.93 15 7 C 0.53 20.34 7.77 86.80 0.67 21.02 15 8 O -0.59 -28.28 16.33 -3.85 -0.06 -28.35 15 9 N -0.70 -27.65 5.50 -469.65 -2.58 -30.23 15 10 C 0.26 13.85 5.43 85.63 0.46 14.31 15 11 C -0.55 -28.75 9.28 25.60 0.24 -28.51 15 12 H 0.09 4.02 7.60 -2.91 -0.02 4.00 15 13 C 0.00 0.17 5.46 84.65 0.46 0.63 15 14 N -0.93 -54.71 13.29 21.45 0.28 -54.43 15 15 Si 0.98 40.88 29.54 68.60 2.03 42.91 15 16 H -0.25 -9.50 7.11 99.48 0.71 -8.79 15 17 H -0.28 -11.58 7.11 99.48 0.71 -10.88 15 18 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 19 C -0.07 -1.59 9.58 22.48 0.22 -1.37 15 20 C -0.06 -0.98 9.73 22.50 0.22 -0.76 15 21 H 0.17 1.29 8.06 -2.91 -0.02 1.27 15 22 H 0.16 2.30 6.39 -2.91 -0.02 2.28 15 23 H 0.41 12.84 6.34 -92.70 -0.59 12.26 15 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 15 25 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 15 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 27 H 0.14 3.25 7.64 -2.91 -0.02 3.23 15 28 H 0.16 1.67 8.06 -2.91 -0.02 1.65 15 Total: -1.00 -70.85 266.62 4.45 -66.40 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.61 Total: 7.11 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 3.82 Total: 6.57 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -1.94 Total: -94.64 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.06 Total: -28.35 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -70.85 4.45 -66.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151658.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.222 kcal (2) G-P(sol) polarization free energy of solvation -70.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds