Wall clock time and date at job start Sun Mar 29 2020 21:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39760 * 120.07533 * 260.27849 * 3 2 1 5 5 C 1.38050 * 120.13412 * 179.77071 * 4 3 2 6 6 C 1.38104 * 120.30232 * 0.50480 * 5 4 3 7 7 C 1.39662 * 120.16222 * 359.74831 * 6 5 4 8 8 C 1.47858 * 120.07346 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00029 * 179.97438 * 8 7 6 10 10 N 1.34783 * 119.99900 * 359.97438 * 8 7 6 11 11 C 1.46497 * 119.99679 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.46718 * 180.02562 * 11 10 8 13 13 H 1.07992 * 120.00045 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99970 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99673 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00086 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47142 * 90.00086 * 16 14 12 18 18 H 1.48502 * 109.47341 * 209.99749 * 16 14 12 19 19 H 1.48493 * 109.47145 * 330.00158 * 16 14 12 20 20 C 1.39330 * 119.85456 * 359.97438 * 7 6 5 21 21 H 1.07988 * 119.93555 * 359.97438 * 4 3 2 22 22 H 1.07995 * 119.84718 * 180.25656 * 5 4 3 23 23 H 1.08006 * 119.91846 * 179.76838 * 6 5 4 24 24 H 0.96997 * 119.99885 * 0.02562 * 10 8 7 25 25 H 1.08997 * 109.47341 * 299.99781 * 11 10 8 26 26 H 1.08995 * 109.47417 * 60.00087 * 11 10 8 27 27 H 0.97001 * 119.99980 * 179.97438 * 15 14 12 28 28 H 1.07997 * 120.14769 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.2052 1.1921 5 6 4.6488 0.2013 1.1943 6 6 5.3469 0.0060 0.0188 7 6 4.6598 -0.1943 -1.1805 8 6 5.4093 -0.4038 -2.4377 9 8 4.8099 -0.5785 -3.4806 10 7 6.7570 -0.4010 -2.4273 11 6 7.4995 -0.6090 -3.6729 12 6 8.9790 -0.5611 -3.3897 13 1 9.3308 -0.3921 -2.3828 14 6 9.8833 -0.7320 -4.4164 15 7 9.4547 -0.9373 -5.6427 16 14 11.7170 -0.6718 -4.0656 17 1 12.2041 -2.0369 -3.7418 18 1 12.4335 -0.1615 -5.2621 19 1 11.9713 0.2305 -2.9140 20 6 3.2665 -0.1974 -1.1894 21 1 2.7284 0.3633 2.1139 22 1 5.1852 0.3557 2.1188 23 1 6.4270 0.0079 0.0271 24 1 7.2353 -0.2619 -1.5950 25 1 7.2415 -1.5817 -4.0916 26 1 7.2401 0.1737 -4.3857 27 1 10.0909 -1.0571 -6.3651 28 1 2.7304 -0.3523 -2.1140 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151806.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:24 Heat of formation + Delta-G solvation = 10.715454 kcal Electronic energy + Delta-G solvation = -14276.879340 eV Core-core repulsion = 11678.680132 eV Total energy + Delta-G solvation = -2598.199209 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.03085 -38.23663 -36.48096 -34.38627 -32.60330 -31.47715 -31.32260 -27.39118 -24.30496 -23.86265 -22.15312 -20.53892 -18.98006 -16.93041 -16.48886 -15.93267 -15.55012 -14.85014 -14.64452 -14.44213 -14.02998 -14.02307 -13.41413 -12.92698 -12.91796 -12.48014 -12.07800 -11.95284 -11.80624 -11.44431 -11.03824 -10.93751 -10.37679 -9.47482 -9.33934 -9.22444 -9.16877 -8.80494 -7.99962 -6.21994 -4.29588 0.48175 0.90529 2.48007 2.59604 3.20986 3.27257 3.29342 3.36252 3.60369 3.92922 3.96898 4.30336 4.63422 4.66968 4.93330 5.05384 5.14429 5.24741 5.48381 5.67597 6.00460 6.06629 6.12415 6.49496 7.21660 7.27711 7.29700 7.43541 7.57787 7.89729 8.47640 8.68039 8.93196 9.36911 10.88085 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.054500 B = 0.004818 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.634365 B = 5810.072076 C = 6308.562302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.260 3.740 3 C -0.041 4.041 4 C -0.056 4.056 5 C -0.126 4.126 6 C -0.059 4.059 7 C -0.120 4.120 8 C 0.538 3.462 9 O -0.547 6.547 10 N -0.702 5.702 11 C 0.248 3.752 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.017 4.017 21 H 0.134 0.866 22 H 0.139 0.861 23 H 0.138 0.862 24 H 0.391 0.609 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.267 0.733 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 2.412 14.429 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.055 4.055 3 C -0.044 4.044 4 C -0.077 4.077 5 C -0.144 4.144 6 C -0.078 4.078 7 C -0.123 4.123 8 C 0.322 3.678 9 O -0.427 6.427 10 N -0.350 5.350 11 C 0.128 3.872 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.521 5.521 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.038 4.038 21 H 0.152 0.848 22 H 0.157 0.843 23 H 0.156 0.844 24 H 0.225 0.775 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.272 2.252 13.440 15.941 hybrid contribution 1.731 0.071 0.469 1.795 sum -6.541 2.323 13.908 15.544 Atomic orbital electron populations 1.81243 1.12020 1.09004 1.07322 1.25626 0.92554 0.93582 0.93745 1.15890 0.84420 1.08959 0.95171 1.21300 0.94485 0.95440 0.96481 1.21045 0.93454 1.01308 0.98628 1.21707 1.00909 0.93624 0.91576 1.20227 0.93749 1.03640 0.94700 1.18146 0.83209 0.78723 0.87683 1.90759 1.68893 1.50579 1.32497 1.46436 1.04961 1.69689 1.13888 1.19193 0.89995 0.97589 0.80442 1.21191 0.90239 1.51963 0.94998 0.91821 1.24956 0.99641 0.94624 0.94790 1.69971 1.35048 1.47239 0.99847 0.86397 0.84084 0.78378 0.77940 1.20434 1.20988 1.19726 1.21324 0.93149 0.92110 0.97243 0.84783 0.84329 0.84425 0.77526 0.95176 0.95161 0.92362 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.85 18.54 41.83 0.78 -5.08 15 2 C 0.26 3.09 15.32 -22.47 -0.34 2.74 15 3 C -0.04 -0.43 5.73 -106.99 -0.61 -1.04 15 4 C -0.06 -0.45 9.75 -39.08 -0.38 -0.83 15 5 C -0.13 -0.97 10.02 -39.70 -0.40 -1.37 15 6 C -0.06 -0.60 9.54 -39.10 -0.37 -0.97 15 7 C -0.12 -1.64 5.87 -105.02 -0.62 -2.26 15 8 C 0.54 10.17 7.77 -12.32 -0.10 10.08 15 9 O -0.55 -12.62 16.34 5.32 0.09 -12.53 15 10 N -0.70 -13.79 5.50 -62.43 -0.34 -14.13 15 11 C 0.25 6.28 5.43 -5.19 -0.03 6.25 15 12 C -0.55 -14.15 9.28 -34.44 -0.32 -14.47 15 13 H 0.06 1.52 7.60 -52.49 -0.40 1.12 15 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 15 N -0.88 -25.33 13.29 55.43 0.74 -24.59 15 16 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 15 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 20 C -0.02 -0.21 9.30 -38.76 -0.36 -0.57 15 21 H 0.13 0.74 8.06 -52.49 -0.42 0.32 15 22 H 0.14 0.66 8.06 -52.49 -0.42 0.24 15 23 H 0.14 1.21 6.39 -52.48 -0.34 0.87 15 24 H 0.39 6.32 6.34 -40.82 -0.26 6.06 15 25 H 0.03 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.27 7.17 8.31 -40.82 -0.34 6.84 15 28 H 0.15 1.95 7.64 -52.49 -0.40 1.55 15 LS Contribution 266.65 15.07 4.02 4.02 Total: -1.00 -31.71 266.65 -5.59 -37.30 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -2.22 Total: 0.71 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.63 Total: -0.82 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 1.17 Total: -43.80 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.71 -5.59 -37.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151806.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.018 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds