Wall clock time and date at job start Sun Mar 29 2020 21:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39760 * 120.07533 * 260.27849 * 3 2 1 5 5 C 1.38050 * 120.13412 * 179.77071 * 4 3 2 6 6 C 1.38104 * 120.30232 * 0.50480 * 5 4 3 7 7 C 1.39662 * 120.16222 * 359.74831 * 6 5 4 8 8 C 1.47858 * 120.07346 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00029 * 179.97438 * 8 7 6 10 10 N 1.34783 * 119.99900 * 359.97438 * 8 7 6 11 11 C 1.46497 * 119.99679 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.46718 * 180.02562 * 11 10 8 13 13 H 1.07992 * 120.00045 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99970 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99673 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00086 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47142 * 90.00086 * 16 14 12 18 18 H 1.48502 * 109.47341 * 209.99749 * 16 14 12 19 19 H 1.48493 * 109.47145 * 330.00158 * 16 14 12 20 20 C 1.39330 * 119.85456 * 359.97438 * 7 6 5 21 21 H 1.07988 * 119.93555 * 359.97438 * 4 3 2 22 22 H 1.07995 * 119.84718 * 180.25656 * 5 4 3 23 23 H 1.08006 * 119.91846 * 179.76838 * 6 5 4 24 24 H 0.96997 * 119.99885 * 0.02562 * 10 8 7 25 25 H 1.08997 * 109.47341 * 299.99781 * 11 10 8 26 26 H 1.08995 * 109.47417 * 60.00087 * 11 10 8 27 27 H 0.97001 * 119.99980 * 179.97438 * 15 14 12 28 28 H 1.07997 * 120.14769 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.2052 1.1921 5 6 4.6488 0.2013 1.1943 6 6 5.3469 0.0060 0.0188 7 6 4.6598 -0.1943 -1.1805 8 6 5.4093 -0.4038 -2.4377 9 8 4.8099 -0.5785 -3.4806 10 7 6.7570 -0.4010 -2.4273 11 6 7.4995 -0.6090 -3.6729 12 6 8.9790 -0.5611 -3.3897 13 1 9.3308 -0.3921 -2.3828 14 6 9.8833 -0.7320 -4.4164 15 7 9.4547 -0.9373 -5.6427 16 14 11.7170 -0.6718 -4.0656 17 1 12.2041 -2.0369 -3.7418 18 1 12.4335 -0.1615 -5.2621 19 1 11.9713 0.2305 -2.9140 20 6 3.2665 -0.1974 -1.1894 21 1 2.7284 0.3633 2.1139 22 1 5.1852 0.3557 2.1188 23 1 6.4270 0.0079 0.0271 24 1 7.2353 -0.2619 -1.5950 25 1 7.2415 -1.5817 -4.0916 26 1 7.2401 0.1737 -4.3857 27 1 10.0909 -1.0571 -6.3651 28 1 2.7304 -0.3523 -2.1140 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151806.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:24 Heat of formation + Delta-G solvation = -11.139751 kcal Electronic energy + Delta-G solvation = -14277.827053 eV Core-core repulsion = 11678.680132 eV Total energy + Delta-G solvation = -2599.146921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.19998 -39.52869 -37.48897 -36.22234 -34.45043 -32.56822 -32.20228 -29.27800 -25.60183 -24.99363 -23.62984 -21.84750 -20.32741 -18.49648 -17.58425 -17.25821 -16.95926 -16.33722 -16.20033 -15.80277 -15.10293 -14.98885 -14.67608 -14.23247 -14.04712 -13.94556 -13.90271 -13.18930 -12.90205 -12.79106 -12.68890 -12.32441 -12.19346 -11.46701 -10.95262 -10.78826 -10.16262 -10.03245 -9.78308 -8.26691 -6.43285 -0.36803 -0.01107 1.46844 1.49093 1.52584 1.60249 1.63692 2.17172 2.29661 2.50142 2.81617 2.91704 3.08978 3.73567 3.87795 4.07573 4.11921 4.39952 4.60985 4.88748 5.09753 5.22647 5.25032 5.25903 5.31118 5.46795 5.65831 5.76610 5.85484 6.36605 6.66665 6.85055 7.24483 7.42284 8.85449 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.054500 B = 0.004818 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.634365 B = 5810.072076 C = 6308.562302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.281 3.719 3 C -0.045 4.045 4 C -0.029 4.029 5 C -0.107 4.107 6 C -0.048 4.048 7 C -0.144 4.144 8 C 0.536 3.464 9 O -0.601 6.601 10 N -0.696 5.696 11 C 0.264 3.736 12 C -0.554 4.554 13 H 0.089 0.911 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.986 3.014 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.252 1.252 20 C -0.026 4.026 21 H 0.173 0.827 22 H 0.186 0.814 23 H 0.155 0.845 24 H 0.410 0.590 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.268 0.732 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.763 3.118 18.562 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.034 4.034 3 C -0.048 4.048 4 C -0.049 4.049 5 C -0.125 4.125 6 C -0.067 4.067 7 C -0.147 4.147 8 C 0.324 3.676 9 O -0.485 6.485 10 N -0.345 5.345 11 C 0.141 3.859 12 C -0.591 4.591 13 H 0.107 0.893 14 C -0.198 4.198 15 N -0.570 5.570 16 Si 0.809 3.191 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.175 1.175 20 C -0.047 4.047 21 H 0.190 0.810 22 H 0.203 0.797 23 H 0.172 0.828 24 H 0.248 0.752 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.077 0.923 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.850 2.968 17.638 19.153 hybrid contribution 1.199 -0.139 -0.754 1.424 sum -5.650 2.829 16.884 18.028 Atomic orbital electron populations 1.81266 1.13187 1.10571 1.08572 1.25763 0.92632 0.92383 0.92580 1.15853 0.83535 1.09989 0.95427 1.21796 0.94890 0.91769 0.96459 1.21508 0.93180 0.98733 0.99036 1.21948 1.01862 0.92040 0.90870 1.19700 0.93598 1.08037 0.93375 1.18977 0.82790 0.76714 0.89113 1.90721 1.69794 1.52741 1.35220 1.46081 1.05392 1.70223 1.12844 1.18618 0.91132 0.94042 0.82077 1.21615 0.90141 1.51204 0.96188 0.89284 1.26088 1.05360 0.93945 0.94385 1.70145 1.37021 1.48649 1.01220 0.85141 0.76996 0.78872 0.78114 1.19691 1.21333 1.17548 1.21146 0.92935 0.93076 0.97587 0.80996 0.79698 0.82760 0.75184 0.99218 0.99194 0.92327 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.52 18.54 19.00 0.35 -12.16 15 2 C 0.28 6.30 15.32 88.33 1.35 7.65 15 3 C -0.04 -0.83 5.73 -21.40 -0.12 -0.96 15 4 C -0.03 -0.31 9.75 22.59 0.22 -0.09 15 5 C -0.11 -1.01 10.02 22.19 0.22 -0.79 15 6 C -0.05 -0.80 9.54 22.58 0.22 -0.59 15 7 C -0.14 -3.86 5.87 -20.12 -0.12 -3.98 15 8 C 0.54 21.14 7.77 86.79 0.67 21.81 15 9 O -0.60 -29.88 16.34 -3.88 -0.06 -29.95 15 10 N -0.70 -27.94 5.50 -469.69 -2.58 -30.53 15 11 C 0.26 14.06 5.43 85.64 0.46 14.52 15 12 C -0.55 -28.85 9.28 25.60 0.24 -28.61 15 13 H 0.09 4.08 7.60 -2.91 -0.02 4.06 15 14 C 0.00 0.09 5.46 84.66 0.46 0.56 15 15 N -0.93 -55.24 13.29 21.45 0.28 -54.95 15 16 Si 0.99 40.83 29.54 68.60 2.03 42.85 15 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 18 H -0.29 -11.97 7.11 99.48 0.71 -11.26 15 19 H -0.25 -9.54 7.11 99.48 0.71 -8.83 15 20 C -0.03 -0.65 9.30 22.80 0.21 -0.44 15 21 H 0.17 0.71 8.06 -2.92 -0.02 0.69 15 22 H 0.19 0.24 8.06 -2.91 -0.02 0.22 15 23 H 0.15 2.05 6.39 -2.91 -0.02 2.03 15 24 H 0.41 12.79 6.34 -92.71 -0.59 12.20 15 25 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 15 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 15 27 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 28 H 0.12 3.58 7.64 -2.91 -0.02 3.56 15 Total: -1.00 -74.76 266.65 4.45 -70.31 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 0.61 Total: 5.34 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 3.82 Total: 9.09 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -1.95 Total: -97.64 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.06 Total: -29.95 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -74.76 4.45 -70.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151806.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.166 kcal (2) G-P(sol) polarization free energy of solvation -74.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds