Wall clock time and date at job start Sun Mar 29 2020 21:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38210 * 119.88423 * 2 1 4 4 C 1.38019 * 120.23808 * 180.27786 * 3 2 1 5 5 C 1.39722 * 120.01503 * 359.44856 * 4 3 2 6 6 C 1.43196 * 120.11207 * 180.29535 * 5 4 3 7 7 N 4.80310 * 137.08836 * 359.97438 * 3 1 2 8 8 C 1.39461 * 119.77906 * 0.27486 * 5 4 3 9 9 C 1.38782 * 119.76127 * 0.02562 * 8 5 4 10 10 N 1.39565 * 120.01071 * 180.02562 * 9 8 5 11 11 C 1.34763 * 120.00108 * 325.21771 * 10 9 8 12 12 O 1.21742 * 120.00117 * 4.52582 * 11 10 9 13 13 C 1.46172 * 120.00083 * 184.52559 * 11 10 9 14 14 H 1.08001 * 120.00155 * 0.02562 * 13 11 10 15 15 C 1.40125 * 120.00126 * 180.02562 * 13 11 10 16 16 N 1.30635 * 120.00315 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99986 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47282 * 60.00073 * 17 15 13 19 19 H 1.48504 * 109.47151 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47454 * 300.00049 * 17 15 13 21 21 H 1.09001 * 109.47047 * 270.27029 * 1 2 3 22 22 H 1.08995 * 109.47248 * 30.27701 * 1 2 3 23 23 H 1.09004 * 109.47123 * 150.27424 * 1 2 3 24 24 H 1.07997 * 119.88037 * 0.03034 * 3 2 1 25 25 H 1.07994 * 119.99314 * 179.72508 * 4 3 2 26 26 H 1.07999 * 120.12691 * 179.97438 * 8 5 4 27 27 H 0.97008 * 119.99276 * 145.21396 * 10 9 8 28 28 H 0.96993 * 120.00578 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1983 0.0000 4 6 3.5758 1.2069 -0.0058 5 6 4.2822 0.0014 0.0000 6 6 5.7142 0.0078 0.0004 7 7 6.8502 0.0130 0.0015 8 6 3.5881 -1.2082 0.0058 9 6 2.2003 -1.2060 0.0052 10 7 1.5003 -2.4135 0.0115 11 6 1.9920 -3.4808 -0.6482 12 8 3.0851 -3.4169 -1.1804 13 6 1.2127 -4.7151 -0.7250 14 1 0.2428 -4.7716 -0.2533 15 6 1.7241 -5.8250 -1.4105 16 7 2.8971 -5.7566 -1.9815 17 14 0.7280 -7.4022 -1.5092 18 1 -0.5663 -7.1288 -2.1840 19 1 1.4848 -8.4180 -2.2841 20 1 0.4732 -7.9134 -0.1384 21 1 -0.3633 0.0048 1.0277 22 1 -0.3633 0.8874 -0.5181 23 1 -0.3633 -0.8925 -0.5096 24 1 1.6518 2.1314 0.0005 25 1 4.1099 2.1455 -0.0102 26 1 4.1285 -2.1433 0.0098 27 1 0.6600 -2.4843 0.4909 28 1 3.2509 -6.5248 -2.4564 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050430471.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:52 Heat of formation + Delta-G solvation = -12.531878 kcal Electronic energy + Delta-G solvation = -14870.193383 eV Core-core repulsion = 12270.986094 eV Total energy + Delta-G solvation = -2599.207289 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.09198 -39.01278 -37.58973 -35.33572 -34.59954 -33.41221 -30.85656 -28.67566 -27.90386 -24.13620 -23.16904 -21.80244 -20.04622 -19.07773 -17.58410 -16.75023 -16.49214 -16.32203 -15.88323 -15.18778 -14.87794 -14.48711 -14.48494 -14.17537 -14.05966 -13.84919 -13.21866 -13.02410 -12.80838 -12.68984 -12.59613 -12.34074 -12.18651 -12.07722 -11.06379 -10.81890 -9.93307 -9.58337 -8.79178 -8.35435 -6.92997 -0.13860 0.54063 1.41183 1.43518 1.55510 1.56406 1.90134 2.21746 2.41509 2.81660 2.97445 3.05513 3.58660 4.02697 4.10767 4.25159 4.51679 4.67886 4.91030 4.96065 5.01588 5.26041 5.28479 5.37052 5.46747 5.60705 5.80087 5.85836 6.17176 6.36843 6.39899 6.79632 7.35560 8.36933 8.57787 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.029890 B = 0.007365 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.530601 B = 3800.844177 C = 4654.670678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.090 4.090 4 C -0.087 4.087 5 C -0.039 4.039 6 C 0.282 3.718 7 N -0.470 5.470 8 C -0.105 4.105 9 C 0.151 3.849 10 N -0.687 5.687 11 C 0.528 3.472 12 O -0.608 6.608 13 C -0.563 4.563 14 H 0.096 0.904 15 C 0.030 3.970 16 N -0.816 5.816 17 Si 0.999 3.001 18 H -0.251 1.251 19 H -0.279 1.279 20 H -0.253 1.253 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.055 0.945 24 H 0.179 0.821 25 H 0.161 0.839 26 H 0.101 0.899 27 H 0.410 0.590 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 11.010 4.888 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.108 4.108 4 C -0.108 4.108 5 C -0.043 4.043 6 C -0.032 4.032 7 N -0.147 5.147 8 C -0.129 4.129 9 C 0.053 3.947 10 N -0.332 5.332 11 C 0.335 3.665 12 O -0.494 6.494 13 C -0.599 4.599 14 H 0.114 0.886 15 C -0.186 4.186 16 N -0.445 5.445 17 Si 0.818 3.182 18 H -0.175 1.175 19 H -0.204 1.204 20 H -0.177 1.177 21 H 0.111 0.889 22 H 0.115 0.885 23 H 0.074 0.926 24 H 0.196 0.804 25 H 0.178 0.822 26 H 0.120 0.880 27 H 0.247 0.753 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.981 10.888 4.390 13.659 hybrid contribution -0.440 -1.297 -0.059 1.371 sum -7.421 9.592 4.331 12.878 Atomic orbital electron populations 1.20841 0.88432 1.03881 1.03813 1.20381 0.98118 0.90933 1.00512 1.21165 0.92834 0.98025 0.98791 1.21335 0.94816 0.95714 0.98962 1.15947 0.83319 0.95232 1.09851 1.26050 0.93041 0.92007 0.92083 1.81148 1.13069 1.09214 1.11248 1.21211 0.94404 0.96912 1.00414 1.17844 0.90463 0.87303 0.99067 1.43593 1.26027 1.09179 1.54363 1.18745 0.86116 0.83772 0.77851 1.90603 1.23820 1.83568 1.51410 1.21380 1.05639 0.96024 1.36842 0.88571 1.26990 0.95495 1.03980 0.92118 1.70144 1.17682 1.31678 1.24994 0.85042 0.78422 0.75037 0.79696 1.17497 1.20352 1.17703 0.88898 0.88505 0.92621 0.80364 0.82166 0.88045 0.75297 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 9.46 71.24 0.67 -1.49 15 2 C -0.10 -2.53 5.91 -19.66 -0.12 -2.64 15 3 C -0.09 -1.84 9.67 22.21 0.21 -1.63 15 4 C -0.09 -2.07 9.75 22.58 0.22 -1.85 15 5 C -0.04 -1.34 5.73 -21.38 -0.12 -1.46 15 6 C 0.28 10.40 15.33 88.33 1.35 11.75 15 7 N -0.47 -18.71 18.54 19.00 0.35 -18.36 15 8 C -0.11 -4.42 8.40 22.69 0.19 -4.23 15 9 C 0.15 5.69 6.28 38.25 0.24 5.93 15 10 N -0.69 -28.75 4.72 -307.65 -1.45 -30.20 15 11 C 0.53 28.93 7.58 86.30 0.65 29.58 15 12 O -0.61 -38.77 12.42 -4.48 -0.06 -38.83 15 13 C -0.56 -29.91 9.54 24.79 0.24 -29.68 15 14 H 0.10 4.44 7.85 -2.91 -0.02 4.42 15 15 C 0.03 1.62 5.50 85.33 0.47 2.09 15 16 N -0.82 -48.50 11.82 21.85 0.26 -48.25 15 17 Si 1.00 38.94 29.56 68.60 2.03 40.97 15 18 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 19 H -0.28 -10.70 7.11 99.48 0.71 -9.99 15 20 H -0.25 -9.25 7.11 99.48 0.71 -8.55 15 21 H 0.09 1.38 8.14 -2.39 -0.02 1.36 15 22 H 0.10 1.32 8.08 -2.39 -0.02 1.30 15 23 H 0.05 1.28 7.16 -2.38 -0.02 1.26 15 24 H 0.18 1.95 8.06 -2.91 -0.02 1.92 15 25 H 0.16 2.68 8.06 -2.91 -0.02 2.65 15 26 H 0.10 5.28 6.19 -2.91 -0.02 5.26 15 27 H 0.41 14.06 7.81 -92.70 -0.72 13.34 15 28 H 0.28 15.00 8.29 -92.71 -0.77 14.23 15 Total: -1.00 -75.11 261.16 5.63 -69.48 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.48 Total: 18.80 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 4.02 Total: 6.38 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -0.84 Total: -96.81 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.06 Total: -38.83 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -75.11 5.63 -69.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050430471.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.946 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds