Wall clock time and date at job start Sun Mar 29 2020 21:47:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13592 * 1
3 3 C 1.43205 * 179.97438 * 2 1
4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1
5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2
6 6 C 1.38364 * 120.14902 * 0.53319 * 5 4 3
7 7 C 1.50696 * 119.84921 * 179.74007 * 6 5 4
8 8 N 1.46504 * 109.47223 * 270.02408 * 7 6 5
9 9 C 1.34771 * 119.99615 * 179.97438 * 8 7 6
10 10 O 1.21689 * 120.00440 * 0.02562 * 9 8 7
11 11 C 1.46377 * 119.99734 * 180.02562 * 9 8 7
12 12 H 1.08002 * 120.00234 * 0.02562 * 11 9 8
13 13 C 1.40048 * 120.00423 * 179.97438 * 11 9 8
14 14 N 1.30680 * 119.99584 * 0.02562 * 13 11 9
15 15 Si 1.86800 * 120.00363 * 179.97438 * 13 11 9
16 16 H 1.48492 * 109.46980 * 60.00325 * 15 13 11
17 17 H 1.48506 * 109.46788 * 180.02562 * 15 13 11
18 18 H 1.48497 * 109.47148 * 300.00127 * 15 13 11
19 19 C 1.38366 * 120.30555 * 359.76678 * 6 5 4
20 20 C 1.37947 * 120.14940 * 359.95280 * 19 6 5
21 21 H 1.07999 * 120.08232 * 359.97438 * 4 3 2
22 22 H 1.08002 * 119.92831 * 180.25347 * 5 4 3
23 23 H 1.09004 * 109.46695 * 30.02569 * 7 6 5
24 24 H 1.08997 * 109.47414 * 150.02246 * 7 6 5
25 25 H 0.96995 * 120.00124 * 0.02562 * 8 7 6
26 26 H 0.97003 * 119.99623 * 179.97438 * 14 13 11
27 27 H 1.07993 * 119.92703 * 179.97438 * 19 6 5
28 28 H 1.08003 * 120.07687 * 180.02562 * 20 19 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1359 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2691 0.2048 1.1901
5 6 4.6486 0.1985 1.1839
6 6 5.3374 0.0014 0.0002
7 6 6.8443 0.0016 0.0002
8 7 7.3325 1.3642 -0.2261
9 6 8.6576 1.6073 -0.2659
10 8 9.4484 0.6949 -0.1143
11 6 9.1454 2.9688 -0.4915
12 1 8.4435 3.7786 -0.6257
13 6 10.5222 3.2217 -0.5323
14 7 11.3715 2.2419 -0.3695
15 14 11.1447 4.9591 -0.8209
16 1 10.6486 5.8485 0.2597
17 1 12.6298 4.9592 -0.8202
18 1 10.6508 5.4504 -2.1323
19 6 4.6489 -0.1954 -1.1838
20 6 3.2694 -0.1972 -1.1910
21 1 2.7328 0.3633 2.1140
22 1 5.1923 0.3522 2.1044
23 1 7.2076 -0.3594 0.9625
24 1 7.2078 -0.6511 -0.7934
25 1 6.7022 2.0915 -0.3466
26 1 12.3252 2.4170 -0.3981
27 1 5.1926 -0.3482 -2.1042
28 1 2.7332 -0.3513 -2.1158
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000051354632.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:47:21
Heat of formation + Delta-G solvation = 8.332350 kcal
Electronic energy + Delta-G solvation = -14261.664184 eV
Core-core repulsion = 11663.361636 eV
Total energy + Delta-G solvation = -2598.302548 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.080 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-39.66715 -37.34961 -36.52361 -33.82293 -32.43747 -31.19650 -30.96812 -27.17332
-25.34374 -22.85098 -22.10630 -19.73796 -19.02323 -17.47074 -15.70980 -15.61001
-15.25790 -14.67945 -14.34160 -14.02605 -13.96751 -13.69522 -13.36135 -12.86896
-12.79053 -12.41014 -12.17717 -11.51618 -11.31515 -11.13207 -11.11120 -10.87471
-10.49209 -10.28638 -9.13863 -8.96210 -8.88150 -7.66198 -7.60278 -6.22559
-4.68503 0.62918 1.24151 2.50530 2.80863 3.13933 3.19187 3.20911
3.72885 3.74787 4.09250 4.54088 4.73640 4.74652 4.80882 5.08740
5.28223 5.31826 5.62964 5.67433 5.83238 6.10228 6.11671 6.16622
6.30307 6.65334 6.72326 7.31746 7.39821 7.85875 7.99860 8.27366
8.98470 9.45864 10.54810 10.72776
Molecular weight = 230.08amu
Principal moments of inertia in cm(-1)
A = 0.051008 B = 0.004643 C = 0.004464
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 548.797837 B = 6028.951145 C = 6270.356712
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.430 5.430
2 C 0.261 3.739
3 C -0.042 4.042
4 C -0.071 4.071
5 C -0.106 4.106
6 C -0.054 4.054
7 C 0.163 3.837
8 N -0.763 5.763
9 C 0.555 3.445
10 O -0.580 6.580
11 C -0.544 4.544
12 H 0.068 0.932
13 C 0.087 3.913
14 N -0.768 5.768
15 Si 0.909 3.091
16 H -0.268 1.268
17 H -0.280 1.280
18 H -0.268 1.268
19 C -0.106 4.106
20 C -0.071 4.071
21 H 0.131 0.869
22 H 0.136 0.864
23 H 0.062 0.938
24 H 0.062 0.938
25 H 0.382 0.618
26 H 0.269 0.731
27 H 0.136 0.864
28 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.847 -2.371 0.393 12.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.105 5.105
2 C -0.054 4.054
3 C -0.045 4.045
4 C -0.092 4.092
5 C -0.125 4.125
6 C -0.055 4.055
7 C 0.038 3.962
8 N -0.419 5.419
9 C 0.359 3.641
10 O -0.463 6.463
11 C -0.581 4.581
12 H 0.086 0.914
13 C -0.133 4.133
14 N -0.396 5.396
15 Si 0.733 3.267
16 H -0.193 1.193
17 H -0.206 1.206
18 H -0.193 1.193
19 C -0.125 4.125
20 C -0.092 4.092
21 H 0.149 0.851
22 H 0.154 0.846
23 H 0.080 0.920
24 H 0.080 0.920
25 H 0.214 0.786
26 H 0.080 0.920
27 H 0.154 0.846
28 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -12.801 -3.132 0.518 13.189
hybrid contribution 0.380 1.205 -0.199 1.279
sum -12.421 -1.927 0.319 12.573
Atomic orbital electron populations
1.81234 1.12180 1.09437 1.07655 1.25799 0.92732 0.93333 0.93488
1.15998 0.84048 1.08851 0.95620 1.21148 0.94259 0.97233 0.96515
1.21121 0.93238 0.99399 0.98721 1.20547 0.96978 0.94965 0.93042
1.19916 0.86233 0.88334 1.01676 1.46208 1.08509 1.06296 1.80910
1.18245 0.78903 0.90213 0.76751 1.90609 1.54214 1.46715 1.54727
1.20835 0.91952 0.92578 1.52756 0.91408 1.25712 0.96762 0.98039
0.92759 1.70009 1.02595 1.31993 1.35023 0.86420 0.77837 0.82853
0.79558 1.19278 1.20552 1.19281 1.21118 0.93239 0.99572 0.98545
1.21148 0.94258 0.97288 0.96465 0.85121 0.84618 0.92023 0.92020
0.78647 0.91995 0.84619 0.85122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.43 -5.81 18.54 41.83 0.78 -5.03 15
2 C 0.26 2.99 15.33 -22.47 -0.34 2.65 15
3 C -0.04 -0.42 5.73 -106.93 -0.61 -1.03 15
4 C -0.07 -0.69 9.76 -39.17 -0.38 -1.07 15
5 C -0.11 -1.17 9.68 -39.64 -0.38 -1.55 15
6 C -0.05 -0.68 5.25 -104.53 -0.55 -1.23 15
7 C 0.16 2.78 5.79 -5.19 -0.03 2.75 15
8 N -0.76 -15.77 5.54 -62.90 -0.35 -16.11 15
9 C 0.55 15.08 7.75 -12.99 -0.10 14.98 15
10 O -0.58 -18.12 15.02 5.20 0.08 -18.04 15
11 C -0.54 -14.84 9.54 -35.63 -0.34 -15.18 15
12 H 0.07 1.69 7.85 -52.49 -0.41 1.27 15
13 C 0.09 2.37 5.50 -17.36 -0.10 2.27 15
14 N -0.77 -22.47 11.83 55.55 0.66 -21.82 15
15 Si 0.91 19.62 29.56 -169.99 -5.02 14.59 15
16 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15
17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15
18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15
19 C -0.11 -1.17 9.68 -39.64 -0.38 -1.55 15
20 C -0.07 -0.69 9.76 -39.17 -0.38 -1.07 15
21 H 0.13 1.01 8.06 -52.49 -0.42 0.58 15
22 H 0.14 1.40 8.06 -52.49 -0.42 0.97 15
23 H 0.06 1.10 8.08 -51.93 -0.42 0.68 15
24 H 0.06 1.10 8.08 -51.93 -0.42 0.68 15
25 H 0.38 6.99 8.44 -40.82 -0.34 6.64 15
26 H 0.27 7.17 8.29 -40.82 -0.34 6.83 15
27 H 0.14 1.40 8.06 -52.49 -0.42 0.97 15
28 H 0.13 1.01 8.06 -52.48 -0.42 0.58 15
LS Contribution 268.55 15.07 4.05 4.05
Total: -1.00 -33.33 268.55 -5.84 -39.17
By element:
Atomic # 1 Polarization: 5.66 SS G_CDS: -2.42 Total: 3.24 kcal
Atomic # 6 Polarization: 3.56 SS G_CDS: -3.60 Total: -0.04 kcal
Atomic # 7 Polarization: -44.05 SS G_CDS: 1.08 Total: -42.96 kcal
Atomic # 8 Polarization: -18.12 SS G_CDS: 0.08 Total: -18.04 kcal
Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal
Total LS contribution 4.05 Total: 4.05 kcal
Total: -33.33 -5.84 -39.17 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000051354632.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.500 kcal
(2) G-P(sol) polarization free energy of solvation -33.326 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.174 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.332 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds