Wall clock time and date at job start Sun Mar 29 2020 21:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38364 * 120.14902 * 0.53319 * 5 4 3 7 7 C 1.50696 * 119.84921 * 179.74007 * 6 5 4 8 8 N 1.46504 * 109.47223 * 270.02408 * 7 6 5 9 9 C 1.34771 * 119.99615 * 179.97438 * 8 7 6 10 10 O 1.21689 * 120.00440 * 0.02562 * 9 8 7 11 11 C 1.46377 * 119.99734 * 180.02562 * 9 8 7 12 12 H 1.08002 * 120.00234 * 0.02562 * 11 9 8 13 13 C 1.40048 * 120.00423 * 179.97438 * 11 9 8 14 14 N 1.30680 * 119.99584 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00363 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.46980 * 60.00325 * 15 13 11 17 17 H 1.48506 * 109.46788 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47148 * 300.00127 * 15 13 11 19 19 C 1.38366 * 120.30555 * 359.76678 * 6 5 4 20 20 C 1.37947 * 120.14940 * 359.95280 * 19 6 5 21 21 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 22 22 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 23 23 H 1.09004 * 109.46695 * 30.02569 * 7 6 5 24 24 H 1.08997 * 109.47414 * 150.02246 * 7 6 5 25 25 H 0.96995 * 120.00124 * 0.02562 * 8 7 6 26 26 H 0.97003 * 119.99623 * 179.97438 * 14 13 11 27 27 H 1.07993 * 119.92703 * 179.97438 * 19 6 5 28 28 H 1.08003 * 120.07687 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 7 7.3325 1.3642 -0.2261 9 6 8.6576 1.6073 -0.2659 10 8 9.4484 0.6949 -0.1143 11 6 9.1454 2.9688 -0.4915 12 1 8.4435 3.7786 -0.6257 13 6 10.5222 3.2217 -0.5323 14 7 11.3715 2.2419 -0.3695 15 14 11.1447 4.9591 -0.8209 16 1 10.6486 5.8485 0.2597 17 1 12.6298 4.9592 -0.8202 18 1 10.6508 5.4504 -2.1323 19 6 4.6489 -0.1954 -1.1838 20 6 3.2694 -0.1972 -1.1910 21 1 2.7328 0.3633 2.1140 22 1 5.1923 0.3522 2.1044 23 1 7.2076 -0.3594 0.9625 24 1 7.2078 -0.6511 -0.7934 25 1 6.7022 2.0915 -0.3466 26 1 12.3252 2.4170 -0.3981 27 1 5.1926 -0.3482 -2.1042 28 1 2.7332 -0.3513 -2.1158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051354632.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:21 Heat of formation + Delta-G solvation = 8.332350 kcal Electronic energy + Delta-G solvation = -14261.664184 eV Core-core repulsion = 11663.361636 eV Total energy + Delta-G solvation = -2598.302548 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.66715 -37.34961 -36.52361 -33.82293 -32.43747 -31.19650 -30.96812 -27.17332 -25.34374 -22.85098 -22.10630 -19.73796 -19.02323 -17.47074 -15.70980 -15.61001 -15.25790 -14.67945 -14.34160 -14.02605 -13.96751 -13.69522 -13.36135 -12.86896 -12.79053 -12.41014 -12.17717 -11.51618 -11.31515 -11.13207 -11.11120 -10.87471 -10.49209 -10.28638 -9.13863 -8.96210 -8.88150 -7.66198 -7.60278 -6.22559 -4.68503 0.62918 1.24151 2.50530 2.80863 3.13933 3.19187 3.20911 3.72885 3.74787 4.09250 4.54088 4.73640 4.74652 4.80882 5.08740 5.28223 5.31826 5.62964 5.67433 5.83238 6.10228 6.11671 6.16622 6.30307 6.65334 6.72326 7.31746 7.39821 7.85875 7.99860 8.27366 8.98470 9.45864 10.54810 10.72776 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.051008 B = 0.004643 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.797837 B = 6028.951145 C = 6270.356712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.261 3.739 3 C -0.042 4.042 4 C -0.071 4.071 5 C -0.106 4.106 6 C -0.054 4.054 7 C 0.163 3.837 8 N -0.763 5.763 9 C 0.555 3.445 10 O -0.580 6.580 11 C -0.544 4.544 12 H 0.068 0.932 13 C 0.087 3.913 14 N -0.768 5.768 15 Si 0.909 3.091 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.268 1.268 19 C -0.106 4.106 20 C -0.071 4.071 21 H 0.131 0.869 22 H 0.136 0.864 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.382 0.618 26 H 0.269 0.731 27 H 0.136 0.864 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 -2.371 0.393 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.054 4.054 3 C -0.045 4.045 4 C -0.092 4.092 5 C -0.125 4.125 6 C -0.055 4.055 7 C 0.038 3.962 8 N -0.419 5.419 9 C 0.359 3.641 10 O -0.463 6.463 11 C -0.581 4.581 12 H 0.086 0.914 13 C -0.133 4.133 14 N -0.396 5.396 15 Si 0.733 3.267 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.125 4.125 20 C -0.092 4.092 21 H 0.149 0.851 22 H 0.154 0.846 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.214 0.786 26 H 0.080 0.920 27 H 0.154 0.846 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.801 -3.132 0.518 13.189 hybrid contribution 0.380 1.205 -0.199 1.279 sum -12.421 -1.927 0.319 12.573 Atomic orbital electron populations 1.81234 1.12180 1.09437 1.07655 1.25799 0.92732 0.93333 0.93488 1.15998 0.84048 1.08851 0.95620 1.21148 0.94259 0.97233 0.96515 1.21121 0.93238 0.99399 0.98721 1.20547 0.96978 0.94965 0.93042 1.19916 0.86233 0.88334 1.01676 1.46208 1.08509 1.06296 1.80910 1.18245 0.78903 0.90213 0.76751 1.90609 1.54214 1.46715 1.54727 1.20835 0.91952 0.92578 1.52756 0.91408 1.25712 0.96762 0.98039 0.92759 1.70009 1.02595 1.31993 1.35023 0.86420 0.77837 0.82853 0.79558 1.19278 1.20552 1.19281 1.21118 0.93239 0.99572 0.98545 1.21148 0.94258 0.97288 0.96465 0.85121 0.84618 0.92023 0.92020 0.78647 0.91995 0.84619 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.81 18.54 41.83 0.78 -5.03 15 2 C 0.26 2.99 15.33 -22.47 -0.34 2.65 15 3 C -0.04 -0.42 5.73 -106.93 -0.61 -1.03 15 4 C -0.07 -0.69 9.76 -39.17 -0.38 -1.07 15 5 C -0.11 -1.17 9.68 -39.64 -0.38 -1.55 15 6 C -0.05 -0.68 5.25 -104.53 -0.55 -1.23 15 7 C 0.16 2.78 5.79 -5.19 -0.03 2.75 15 8 N -0.76 -15.77 5.54 -62.90 -0.35 -16.11 15 9 C 0.55 15.08 7.75 -12.99 -0.10 14.98 15 10 O -0.58 -18.12 15.02 5.20 0.08 -18.04 15 11 C -0.54 -14.84 9.54 -35.63 -0.34 -15.18 15 12 H 0.07 1.69 7.85 -52.49 -0.41 1.27 15 13 C 0.09 2.37 5.50 -17.36 -0.10 2.27 15 14 N -0.77 -22.47 11.83 55.55 0.66 -21.82 15 15 Si 0.91 19.62 29.56 -169.99 -5.02 14.59 15 16 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 19 C -0.11 -1.17 9.68 -39.64 -0.38 -1.55 15 20 C -0.07 -0.69 9.76 -39.17 -0.38 -1.07 15 21 H 0.13 1.01 8.06 -52.49 -0.42 0.58 15 22 H 0.14 1.40 8.06 -52.49 -0.42 0.97 15 23 H 0.06 1.10 8.08 -51.93 -0.42 0.68 15 24 H 0.06 1.10 8.08 -51.93 -0.42 0.68 15 25 H 0.38 6.99 8.44 -40.82 -0.34 6.64 15 26 H 0.27 7.17 8.29 -40.82 -0.34 6.83 15 27 H 0.14 1.40 8.06 -52.49 -0.42 0.97 15 28 H 0.13 1.01 8.06 -52.48 -0.42 0.58 15 LS Contribution 268.55 15.07 4.05 4.05 Total: -1.00 -33.33 268.55 -5.84 -39.17 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -2.42 Total: 3.24 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -3.60 Total: -0.04 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 1.08 Total: -42.96 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.08 Total: -18.04 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.33 -5.84 -39.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051354632.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.500 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds