Wall clock time and date at job start Sun Mar 29 2020 21:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38364 * 120.14902 * 0.53319 * 5 4 3 7 7 C 1.50696 * 119.84921 * 179.74007 * 6 5 4 8 8 N 1.46504 * 109.47223 * 270.02408 * 7 6 5 9 9 C 1.34771 * 119.99615 * 179.97438 * 8 7 6 10 10 O 1.21689 * 120.00440 * 0.02562 * 9 8 7 11 11 C 1.46377 * 119.99734 * 180.02562 * 9 8 7 12 12 H 1.08002 * 120.00234 * 0.02562 * 11 9 8 13 13 C 1.40048 * 120.00423 * 179.97438 * 11 9 8 14 14 N 1.30680 * 119.99584 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00363 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.46980 * 60.00325 * 15 13 11 17 17 H 1.48506 * 109.46788 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47148 * 300.00127 * 15 13 11 19 19 C 1.38366 * 120.30555 * 359.76678 * 6 5 4 20 20 C 1.37947 * 120.14940 * 359.95280 * 19 6 5 21 21 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 22 22 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 23 23 H 1.09004 * 109.46695 * 30.02569 * 7 6 5 24 24 H 1.08997 * 109.47414 * 150.02246 * 7 6 5 25 25 H 0.96995 * 120.00124 * 0.02562 * 8 7 6 26 26 H 0.97003 * 119.99623 * 179.97438 * 14 13 11 27 27 H 1.07993 * 119.92703 * 179.97438 * 19 6 5 28 28 H 1.08003 * 120.07687 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 7 7.3325 1.3642 -0.2261 9 6 8.6576 1.6073 -0.2659 10 8 9.4484 0.6949 -0.1143 11 6 9.1454 2.9688 -0.4915 12 1 8.4435 3.7786 -0.6257 13 6 10.5222 3.2217 -0.5323 14 7 11.3715 2.2419 -0.3695 15 14 11.1447 4.9591 -0.8209 16 1 10.6486 5.8485 0.2597 17 1 12.6298 4.9592 -0.8202 18 1 10.6508 5.4504 -2.1323 19 6 4.6489 -0.1954 -1.1838 20 6 3.2694 -0.1972 -1.1910 21 1 2.7328 0.3633 2.1140 22 1 5.1923 0.3522 2.1044 23 1 7.2076 -0.3594 0.9625 24 1 7.2078 -0.6511 -0.7934 25 1 6.7022 2.0915 -0.3466 26 1 12.3252 2.4170 -0.3981 27 1 5.1926 -0.3482 -2.1042 28 1 2.7332 -0.3513 -2.1158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051354632.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:21 Heat of formation + Delta-G solvation = -14.327249 kcal Electronic energy + Delta-G solvation = -14262.646778 eV Core-core repulsion = 11663.361636 eV Total energy + Delta-G solvation = -2599.285142 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63141 -39.19338 -37.60127 -35.41849 -34.46061 -32.33623 -32.03351 -28.92035 -26.92315 -23.69086 -23.27882 -21.65859 -19.89459 -19.32824 -17.46418 -16.70370 -16.69124 -16.01600 -15.62421 -15.38050 -15.04910 -15.03102 -14.39931 -14.30356 -13.94074 -13.81657 -13.31365 -13.17122 -12.98685 -12.64945 -12.60021 -12.27406 -12.02055 -11.97698 -10.88596 -10.08888 -9.95383 -9.64893 -9.45296 -8.25444 -6.81613 -0.27941 0.42255 1.43899 1.46666 1.58316 1.59517 1.87755 2.28579 2.50750 2.82306 2.84700 3.39114 3.65029 3.78815 3.91226 3.99440 4.40089 4.40258 4.75045 4.76037 4.88809 5.10032 5.22787 5.32456 5.35850 5.65512 5.83959 5.91306 6.25192 6.29649 6.42017 6.90691 7.57856 8.52295 8.70500 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.051008 B = 0.004643 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.797837 B = 6028.951145 C = 6270.356712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.284 3.716 3 C -0.038 4.038 4 C -0.060 4.060 5 C -0.106 4.106 6 C -0.065 4.065 7 C 0.167 3.833 8 N -0.748 5.748 9 C 0.539 3.461 10 O -0.632 6.632 11 C -0.572 4.572 12 H 0.088 0.912 13 C 0.029 3.971 14 N -0.821 5.821 15 Si 0.996 3.004 16 H -0.255 1.255 17 H -0.276 1.276 18 H -0.255 1.255 19 C -0.106 4.106 20 C -0.060 4.060 21 H 0.155 0.845 22 H 0.141 0.859 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.396 0.604 26 H 0.274 0.726 27 H 0.141 0.859 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.343 -0.939 0.155 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.031 4.031 3 C -0.042 4.042 4 C -0.080 4.080 5 C -0.125 4.125 6 C -0.067 4.067 7 C 0.043 3.957 8 N -0.403 5.403 9 C 0.343 3.657 10 O -0.519 6.519 11 C -0.609 4.609 12 H 0.106 0.894 13 C -0.186 4.186 14 N -0.451 5.451 15 Si 0.816 3.184 16 H -0.179 1.179 17 H -0.201 1.201 18 H -0.179 1.179 19 C -0.125 4.125 20 C -0.080 4.080 21 H 0.173 0.827 22 H 0.158 0.842 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.229 0.771 26 H 0.084 0.916 27 H 0.158 0.842 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.373 -1.697 0.280 14.475 hybrid contribution 0.748 0.685 -0.113 1.021 sum -13.625 -1.011 0.167 13.663 Atomic orbital electron populations 1.81273 1.13263 1.10703 1.08828 1.25810 0.92617 0.92241 0.92390 1.16063 0.83374 1.08676 0.96070 1.21319 0.93523 0.95794 0.97355 1.21151 0.93873 0.99223 0.98240 1.20167 0.94059 0.97727 0.94709 1.19888 0.89527 0.85896 1.00392 1.45813 1.06894 1.08413 1.79207 1.18575 0.80575 0.90082 0.76422 1.90563 1.56285 1.48073 1.57000 1.21400 0.93135 0.93347 1.52988 0.89403 1.26950 0.96792 1.03283 0.91617 1.70181 1.03210 1.35237 1.36470 0.85094 0.77144 0.76075 0.80128 1.17890 1.20100 1.17903 1.21148 0.93874 0.99399 0.98064 1.21318 0.93521 0.95838 0.97313 0.82747 0.84159 0.93325 0.93322 0.77059 0.91606 0.84160 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.65 18.54 19.00 0.35 -11.30 15 2 C 0.28 5.75 15.33 88.33 1.35 7.10 15 3 C -0.04 -0.66 5.73 -21.36 -0.12 -0.78 15 4 C -0.06 -0.97 9.76 22.54 0.22 -0.75 15 5 C -0.11 -2.13 9.68 22.23 0.22 -1.92 15 6 C -0.07 -1.58 5.25 -19.81 -0.10 -1.68 15 7 C 0.17 5.79 5.79 85.63 0.50 6.28 15 8 N -0.75 -31.19 5.54 -471.14 -2.61 -33.80 15 9 C 0.54 30.04 7.75 86.36 0.67 30.71 15 10 O -0.63 -41.12 15.02 -4.31 -0.06 -41.18 15 11 C -0.57 -31.35 9.54 24.83 0.24 -31.12 15 12 H 0.09 4.28 7.85 -2.91 -0.02 4.26 15 13 C 0.03 1.57 5.50 85.30 0.47 2.03 15 14 N -0.82 -49.33 11.83 21.84 0.26 -49.08 15 15 Si 1.00 39.85 29.56 68.60 2.03 41.88 15 16 H -0.25 -9.59 7.11 99.48 0.71 -8.88 15 17 H -0.28 -10.73 7.11 99.48 0.71 -10.02 15 18 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15 19 C -0.11 -2.13 9.68 22.23 0.22 -1.92 15 20 C -0.06 -0.97 9.76 22.54 0.22 -0.75 15 21 H 0.15 1.82 8.06 -2.91 -0.02 1.79 15 22 H 0.14 2.68 8.06 -2.91 -0.02 2.65 15 23 H 0.05 1.80 8.08 -2.38 -0.02 1.78 15 24 H 0.05 1.80 8.08 -2.39 -0.02 1.78 15 25 H 0.40 14.22 8.44 -92.71 -0.78 13.44 15 26 H 0.27 14.95 8.29 -92.71 -0.77 14.19 15 27 H 0.14 2.68 8.06 -2.91 -0.02 2.65 15 28 H 0.15 1.82 8.06 -2.91 -0.02 1.79 15 Total: -1.00 -73.96 268.55 4.24 -69.72 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.41 Total: 16.55 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 3.87 Total: 7.21 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -2.00 Total: -94.18 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.06 Total: -41.18 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -73.96 4.24 -69.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051354632.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.391 kcal (2) G-P(sol) polarization free energy of solvation -73.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds