Wall clock time and date at job start Sun Mar 29 2020 21:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86801 * 120.00596 * 2 1 4 4 H 1.48501 * 109.46957 * 269.99984 * 3 2 1 5 5 H 1.48505 * 109.46867 * 29.99895 * 3 2 1 6 6 H 1.48497 * 109.47375 * 149.99767 * 3 2 1 7 7 C 1.39024 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00325 * 179.97438 * 7 2 1 9 9 N 1.36905 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00041 * 180.02562 * 9 7 2 11 11 O 1.21617 * 119.99540 * 359.97438 * 10 9 7 12 12 C 1.47549 * 120.00149 * 179.97438 * 10 9 7 13 13 C 1.40259 * 119.97716 * 359.97438 * 12 10 9 14 14 C 1.36309 * 120.65870 * 179.97438 * 13 12 10 15 15 C 1.39385 * 120.24624 * 359.97438 * 14 13 12 16 16 N 1.37410 * 133.23676 * 180.02562 * 15 14 13 17 17 H 0.97001 * 125.00811 * 359.95138 * 16 15 14 18 18 C 1.36862 * 109.97816 * 180.22830 * 16 15 14 19 19 C 1.34194 * 109.96264 * 359.60525 * 18 16 15 20 20 C 1.40872 * 119.65209 * 0.02562 * 15 14 13 21 21 C 1.39220 * 119.97824 * 179.97438 * 12 10 9 22 22 H 0.97008 * 119.99355 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00113 * 359.97438 * 9 7 2 24 24 H 1.07992 * 119.67136 * 359.95314 * 13 12 10 25 25 H 1.07998 * 119.87374 * 180.02562 * 14 13 12 26 26 H 1.07995 * 125.01851 * 179.73295 * 18 16 15 27 27 H 1.07991 * 126.54417 * 180.12845 * 19 18 16 28 28 H 1.08005 * 120.30795 * 359.97438 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0463 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4400 0.7001 7 6 2.0089 -1.2040 0.0005 8 1 3.0888 -1.2041 0.0001 9 7 1.3242 -2.3896 0.0005 10 6 1.9980 -3.5569 0.0016 11 8 3.2142 -3.5569 0.0021 12 6 1.2602 -4.8347 0.0022 13 6 -0.1424 -4.8340 0.0022 14 6 -0.8380 -6.0062 0.0022 15 6 -0.1608 -7.2245 0.0016 16 7 -0.5785 -8.5336 0.0010 17 1 -1.5045 -8.8223 0.0016 18 6 0.5048 -9.3701 0.0058 19 6 1.6383 -8.6517 0.0009 20 6 1.2478 -7.2389 0.0016 21 6 1.9567 -6.0401 0.0027 22 1 -0.4849 0.8402 -0.0004 23 1 0.3542 -2.3895 0.0005 24 1 -0.6766 -3.8954 0.0025 25 1 -1.9179 -5.9909 0.0017 26 1 0.4548 -10.4488 0.0105 27 1 2.6458 -9.0404 0.0009 28 1 3.0367 -6.0456 0.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082563442.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:11 Heat of formation + Delta-G solvation = 18.683993 kcal Electronic energy + Delta-G solvation = -14755.469245 eV Core-core repulsion = 12157.615578 eV Total energy + Delta-G solvation = -2597.853667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.97456 -38.36282 -35.93537 -33.99625 -31.74952 -31.26248 -29.21435 -28.49596 -25.18100 -22.72918 -21.87264 -20.64815 -19.22335 -18.03575 -17.80434 -16.31321 -15.47211 -14.86019 -14.32264 -14.25597 -13.65324 -13.53138 -13.32924 -13.08312 -12.77602 -12.34401 -11.91175 -11.52010 -11.23393 -10.98735 -10.54705 -10.37981 -10.19855 -9.58127 -9.50140 -8.42661 -8.02373 -7.89734 -7.49211 -6.47680 -3.81559 1.42502 1.68146 2.88417 3.19073 3.24373 3.25795 3.32287 3.83035 4.15586 4.62360 4.82784 5.01791 5.08274 5.30959 5.37888 5.53428 5.74266 5.85562 5.94583 6.15478 6.23282 6.43676 6.77834 6.88020 6.96320 7.05955 7.41332 7.51089 7.63018 8.05390 8.59814 9.14644 9.52174 10.07291 10.69845 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.063458 B = 0.005612 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.132151 B = 4988.048504 C = 5419.337955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.022 3.978 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.294 4.294 8 H 0.107 0.893 9 N -0.549 5.549 10 C 0.475 3.525 11 O -0.599 6.599 12 C -0.124 4.124 13 C -0.074 4.074 14 C -0.139 4.139 15 C 0.097 3.903 16 N -0.598 5.598 17 H 0.412 0.588 18 C 0.036 3.964 19 C -0.197 4.197 20 C -0.118 4.118 21 C -0.026 4.026 22 H 0.274 0.726 23 H 0.393 0.607 24 H 0.131 0.869 25 H 0.118 0.882 26 H 0.166 0.834 27 H 0.145 0.855 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -14.465 0.022 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.181 4.181 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.424 4.424 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.263 3.737 11 O -0.486 6.486 12 C -0.129 4.129 13 C -0.094 4.094 14 C -0.160 4.160 15 C -0.011 4.011 16 N -0.202 5.202 17 H 0.248 0.752 18 C -0.089 4.089 19 C -0.222 4.222 20 C -0.123 4.123 21 C -0.046 4.046 22 H 0.084 0.916 23 H 0.228 0.772 24 H 0.148 0.852 25 H 0.136 0.864 26 H 0.183 0.817 27 H 0.162 0.838 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.217 -14.314 0.025 14.922 hybrid contribution -0.759 0.646 -0.010 0.997 sum -4.976 -13.668 0.015 14.546 Atomic orbital electron populations 1.69602 1.06065 1.28469 1.49389 1.25342 0.95679 0.99942 0.97092 0.85802 0.79288 0.80423 0.78495 1.20268 1.20831 1.19243 1.19815 0.93677 0.82222 1.46714 0.87552 1.41864 1.09404 1.04648 1.62398 1.17689 0.87399 0.83283 0.85322 1.90589 1.13388 1.87191 1.57421 1.20045 0.93111 0.94538 1.05161 1.20841 0.93482 0.97566 0.97532 1.19595 0.98996 0.89320 1.08086 1.18359 0.93883 0.84913 1.03928 1.41679 1.08364 1.04217 1.65894 0.75223 1.21696 0.86023 0.95767 1.05463 1.21716 0.98004 0.90968 1.11534 1.19157 0.91981 0.93523 1.07627 1.20618 1.00047 0.88973 0.94976 0.91632 0.77187 0.85154 0.86366 0.81656 0.83750 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.26 13.05 55.50 0.72 -23.53 15 2 C 0.02 0.59 5.50 -17.45 -0.10 0.49 15 3 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 15 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.29 -8.36 9.68 -14.99 -0.15 -8.51 15 8 H 0.11 3.14 7.15 -52.49 -0.38 2.77 15 9 N -0.55 -14.54 5.23 -11.92 -0.06 -14.60 15 10 C 0.47 12.25 7.71 -12.46 -0.10 12.16 15 11 O -0.60 -17.33 15.90 5.26 0.08 -17.25 15 12 C -0.12 -2.63 5.87 -104.98 -0.62 -3.25 15 13 C -0.07 -1.34 9.46 -39.52 -0.37 -1.72 15 14 C -0.14 -2.13 10.00 -39.85 -0.40 -2.53 15 15 C 0.10 1.46 7.27 -83.94 -0.61 0.85 15 16 N -0.60 -6.67 6.05 -10.60 -0.06 -6.74 15 17 H 0.41 3.14 8.96 -40.82 -0.37 2.78 15 18 C 0.04 0.38 11.81 -16.73 -0.20 0.18 15 19 C -0.20 -2.60 11.09 -37.64 -0.42 -3.02 15 20 C -0.12 -1.99 6.36 -105.16 -0.67 -2.66 15 21 C -0.03 -0.50 9.65 -38.84 -0.37 -0.88 15 22 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 23 H 0.39 9.83 5.90 -40.82 -0.24 9.59 15 24 H 0.13 2.30 6.36 -52.49 -0.33 1.97 15 25 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 26 H 0.17 1.04 8.06 -52.49 -0.42 0.62 15 27 H 0.14 1.61 8.06 -52.49 -0.42 1.19 15 28 H 0.13 2.61 7.64 -52.48 -0.40 2.21 15 LS Contribution 254.01 15.07 3.83 3.83 Total: -1.00 -32.96 254.01 -6.63 -39.59 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -2.12 Total: 11.59 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -4.00 Total: -8.88 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.60 Total: -44.87 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.08 Total: -17.25 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.96 -6.63 -39.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082563442.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.278 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds