Wall clock time and date at job start Sun Mar 29 2020 21:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86801 * 120.00596 * 2 1 4 4 H 1.48501 * 109.46957 * 269.99984 * 3 2 1 5 5 H 1.48505 * 109.46867 * 29.99895 * 3 2 1 6 6 H 1.48497 * 109.47375 * 149.99767 * 3 2 1 7 7 C 1.39024 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00325 * 179.97438 * 7 2 1 9 9 N 1.36905 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00041 * 180.02562 * 9 7 2 11 11 O 1.21617 * 119.99540 * 359.97438 * 10 9 7 12 12 C 1.47549 * 120.00149 * 179.97438 * 10 9 7 13 13 C 1.40259 * 119.97716 * 359.97438 * 12 10 9 14 14 C 1.36309 * 120.65870 * 179.97438 * 13 12 10 15 15 C 1.39385 * 120.24624 * 359.97438 * 14 13 12 16 16 N 1.37410 * 133.23676 * 180.02562 * 15 14 13 17 17 H 0.97001 * 125.00811 * 359.95138 * 16 15 14 18 18 C 1.36862 * 109.97816 * 180.22830 * 16 15 14 19 19 C 1.34194 * 109.96264 * 359.60525 * 18 16 15 20 20 C 1.40872 * 119.65209 * 0.02562 * 15 14 13 21 21 C 1.39220 * 119.97824 * 179.97438 * 12 10 9 22 22 H 0.97008 * 119.99355 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00113 * 359.97438 * 9 7 2 24 24 H 1.07992 * 119.67136 * 359.95314 * 13 12 10 25 25 H 1.07998 * 119.87374 * 180.02562 * 14 13 12 26 26 H 1.07995 * 125.01851 * 179.73295 * 18 16 15 27 27 H 1.07991 * 126.54417 * 180.12845 * 19 18 16 28 28 H 1.08005 * 120.30795 * 359.97438 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0463 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4400 0.7001 7 6 2.0089 -1.2040 0.0005 8 1 3.0888 -1.2041 0.0001 9 7 1.3242 -2.3896 0.0005 10 6 1.9980 -3.5569 0.0016 11 8 3.2142 -3.5569 0.0021 12 6 1.2602 -4.8347 0.0022 13 6 -0.1424 -4.8340 0.0022 14 6 -0.8380 -6.0062 0.0022 15 6 -0.1608 -7.2245 0.0016 16 7 -0.5785 -8.5336 0.0010 17 1 -1.5045 -8.8223 0.0016 18 6 0.5048 -9.3701 0.0058 19 6 1.6383 -8.6517 0.0009 20 6 1.2478 -7.2389 0.0016 21 6 1.9567 -6.0401 0.0027 22 1 -0.4849 0.8402 -0.0004 23 1 0.3542 -2.3895 0.0005 24 1 -0.6766 -3.8954 0.0025 25 1 -1.9179 -5.9909 0.0017 26 1 0.4548 -10.4488 0.0105 27 1 2.6458 -9.0404 0.0009 28 1 3.0367 -6.0456 0.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082563442.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:11 Heat of formation + Delta-G solvation = -4.494646 kcal Electronic energy + Delta-G solvation = -14756.474346 eV Core-core repulsion = 12157.615578 eV Total energy + Delta-G solvation = -2598.858768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.12930 -40.24216 -37.38743 -36.09066 -33.41965 -32.86878 -30.62938 -29.67265 -27.13553 -24.27797 -23.20534 -21.72825 -20.94958 -20.05320 -18.99932 -17.92565 -16.90653 -16.74041 -16.00355 -15.64201 -15.19784 -15.13961 -14.87854 -14.62414 -13.93721 -13.61035 -13.58418 -13.24230 -12.99460 -12.45834 -12.44567 -12.12023 -11.80535 -11.57580 -10.73907 -10.51097 -10.10397 -9.18991 -8.66966 -8.53746 -5.98880 0.06722 0.33154 1.40671 1.40805 1.54852 1.86298 2.13661 2.27078 2.28749 2.92446 3.15473 3.34312 3.78734 3.99664 4.24191 4.27565 4.39107 4.48472 4.77940 4.80378 5.02394 5.15196 5.33908 5.43218 5.56313 5.67472 5.78775 5.97272 6.16704 6.53183 6.78323 7.04280 7.46580 8.03408 8.63991 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.063458 B = 0.005612 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.132151 B = 4988.048504 C = 5419.337955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.272 1.272 7 C -0.340 4.340 8 H 0.082 0.918 9 N -0.555 5.555 10 C 0.470 3.530 11 O -0.643 6.643 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.119 4.119 15 C 0.095 3.905 16 N -0.578 5.578 17 H 0.434 0.566 18 C 0.076 3.924 19 C -0.231 4.231 20 C -0.138 4.138 21 C -0.038 4.038 22 H 0.282 0.718 23 H 0.398 0.602 24 H 0.128 0.872 25 H 0.158 0.842 26 H 0.222 0.778 27 H 0.158 0.842 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 -16.825 0.008 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.100 0.900 9 N -0.190 5.190 10 C 0.260 3.740 11 O -0.533 6.533 12 C -0.160 4.160 13 C -0.110 4.110 14 C -0.140 4.140 15 C -0.014 4.014 16 N -0.183 5.183 17 H 0.275 0.725 18 C -0.051 4.051 19 C -0.255 4.255 20 C -0.143 4.143 21 C -0.059 4.059 22 H 0.092 0.908 23 H 0.234 0.766 24 H 0.146 0.854 25 H 0.176 0.824 26 H 0.238 0.762 27 H 0.176 0.824 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.442 -16.707 0.010 17.906 hybrid contribution -0.160 1.081 -0.006 1.092 sum -6.603 -15.626 0.004 16.964 Atomic orbital electron populations 1.69656 1.06974 1.29809 1.48812 1.26182 0.96663 1.02630 0.95636 0.84836 0.77871 0.76169 0.78888 1.19310 1.19003 1.19689 1.19793 0.93025 0.83905 1.50182 0.90049 1.41852 1.09527 1.04569 1.63024 1.18512 0.87225 0.84734 0.83542 1.90523 1.15487 1.88176 1.59139 1.19736 0.94487 0.92523 1.09244 1.20775 0.92013 0.98951 0.99252 1.19871 1.00732 0.88221 1.05142 1.18442 0.93235 0.86612 1.03110 1.41773 1.10060 1.02571 1.63871 0.72527 1.22512 0.84332 0.97776 1.00438 1.22024 1.00188 0.89259 1.14014 1.19481 0.93162 0.94233 1.07465 1.20557 0.99367 0.90014 0.95946 0.90819 0.76616 0.85419 0.82399 0.76164 0.82398 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.04 13.05 21.68 0.28 -49.76 15 2 C -0.01 -0.57 5.50 84.95 0.47 -0.10 15 3 Si 1.00 43.64 29.55 68.60 2.03 45.67 15 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 7 C -0.34 -20.36 9.68 84.09 0.81 -19.55 15 8 H 0.08 5.17 7.15 -2.91 -0.02 5.15 15 9 N -0.55 -31.26 5.23 -309.86 -1.62 -32.89 15 10 C 0.47 26.05 7.71 86.70 0.67 26.72 15 11 O -0.64 -40.24 15.90 -4.09 -0.06 -40.30 15 12 C -0.16 -6.97 5.87 -20.09 -0.12 -7.09 15 13 C -0.09 -3.30 9.46 22.31 0.21 -3.09 15 14 C -0.12 -3.38 10.00 22.10 0.22 -3.16 15 15 C 0.10 2.60 7.27 39.19 0.28 2.89 15 16 N -0.58 -9.82 6.05 -187.46 -1.13 -10.96 15 17 H 0.43 3.90 8.96 -92.71 -0.83 3.06 15 18 C 0.08 1.15 11.81 82.98 0.98 2.13 15 19 C -0.23 -5.42 11.09 23.53 0.26 -5.16 15 20 C -0.14 -4.51 6.36 -20.21 -0.13 -4.64 15 21 C -0.04 -1.58 9.65 22.75 0.22 -1.36 15 22 H 0.28 14.27 8.31 -92.70 -0.77 13.50 15 23 H 0.40 21.02 5.90 -92.71 -0.55 20.47 15 24 H 0.13 4.65 6.36 -2.91 -0.02 4.63 15 25 H 0.16 3.18 8.06 -2.91 -0.02 3.16 15 26 H 0.22 1.02 8.06 -2.91 -0.02 0.99 15 27 H 0.16 3.17 8.06 -2.92 -0.02 3.15 15 28 H 0.11 4.88 7.64 -2.91 -0.02 4.86 15 Total: -1.00 -76.81 254.01 3.21 -73.60 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.16 Total: 27.03 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 3.88 Total: -12.40 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -2.47 Total: -93.60 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -0.06 Total: -40.30 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.81 3.21 -73.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082563442.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.103 kcal (2) G-P(sol) polarization free energy of solvation -76.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds