Wall clock time and date at job start Sun Mar 29 2020 22:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00238 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.42103 * 109.47078 * 296.39075 * 12 11 10 14 14 C 1.81393 * 103.00232 * 179.97438 * 12 11 10 15 15 C 1.54266 * 110.03206 * 302.17075 * 14 12 11 16 16 C 1.54892 * 104.19340 * 217.10362 * 15 14 12 17 17 C 1.54892 * 102.74911 * 37.93877 * 16 15 14 18 18 C 1.53877 * 110.03472 * 184.99780 * 14 12 11 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 21 21 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 22 22 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 23 23 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 24 24 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 25 25 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 26 26 H 1.09007 * 110.01433 * 63.61210 * 14 12 11 27 27 H 1.08993 * 110.48588 * 335.77579 * 15 14 12 28 28 H 1.09000 * 110.48833 * 98.42876 * 15 14 12 29 29 H 1.09006 * 110.75566 * 279.62330 * 16 15 14 30 30 H 1.09001 * 110.75550 * 156.25836 * 16 15 14 31 31 H 1.09003 * 110.48239 * 203.37644 * 17 16 15 32 32 H 1.08997 * 110.59500 * 80.79573 * 17 16 15 33 33 H 1.09000 * 110.03454 * 238.56946 * 18 14 12 34 34 H 1.09000 * 110.03260 * 359.95582 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 8 3.4193 -6.3384 -1.2021 14 6 1.5807 -7.8246 -0.0019 15 6 0.6465 -7.7912 1.2253 16 6 0.5401 -9.2734 1.6621 17 6 1.9753 -9.8043 1.4225 18 6 2.4256 -9.1046 0.1235 19 1 -0.4851 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8719 -3.6045 0.8894 23 1 2.8719 -3.6044 -0.8905 24 1 0.8533 -5.0451 0.8886 25 1 0.8538 -5.0445 -0.8914 26 1 0.9925 -7.8539 -0.9191 27 1 1.0843 -7.1894 2.0217 28 1 -0.3339 -7.4039 0.9480 29 1 -0.1784 -9.8085 1.0411 30 1 0.2718 -9.3472 2.7160 31 1 1.9645 -10.8861 1.2892 32 1 2.6290 -9.5294 2.2502 33 1 2.2467 -9.7554 -0.7324 34 1 3.4835 -8.8493 0.1835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082599864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:06 Heat of formation + Delta-G solvation = -73.171100 kcal Electronic energy + Delta-G solvation = -13892.775352 eV Core-core repulsion = 11529.922844 eV Total energy + Delta-G solvation = -2362.852508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.86840 -35.38575 -34.41440 -32.02037 -29.03507 -28.87802 -27.37063 -23.43597 -20.90275 -20.84485 -19.97906 -17.27317 -16.52287 -16.10326 -15.63500 -14.70812 -14.53971 -14.16033 -13.97291 -13.50261 -13.13260 -12.38524 -12.00404 -11.81892 -11.58771 -11.29847 -11.28293 -11.18075 -10.97781 -10.87140 -10.77357 -10.71022 -10.59853 -9.97219 -9.76871 -9.20695 -8.97333 -8.35215 -7.92801 -5.99895 -4.02362 1.76268 2.88621 3.31953 3.39329 3.44264 3.98112 4.42178 4.46644 4.49741 4.76310 5.23313 5.26932 5.31625 5.35901 5.47034 5.50420 5.57142 5.66243 5.67424 5.75411 5.88236 5.99252 6.06224 6.16598 6.23789 6.54135 6.73277 7.06723 7.67173 7.79771 7.99810 8.41897 9.04889 9.61917 11.11449 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.055816 B = 0.004809 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.527044 B = 5820.478673 C = 6136.800827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.093 4.093 11 C -0.430 4.430 12 S 1.224 4.776 13 O -0.856 6.856 14 C -0.419 4.419 15 C -0.096 4.096 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.092 4.092 19 H 0.260 0.740 20 H 0.014 0.986 21 H 0.019 0.981 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.113 0.887 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -18.425 6.575 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.568 4.568 12 S 1.425 4.575 13 O -0.851 6.851 14 C -0.536 4.536 15 C -0.134 4.134 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.130 4.130 19 H 0.069 0.931 20 H 0.032 0.968 21 H 0.038 0.962 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.131 0.869 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.965 -18.306 6.521 19.658 hybrid contribution -1.145 0.952 -2.030 2.518 sum 1.820 -17.355 4.491 18.018 Atomic orbital electron populations 1.69975 1.06090 1.26501 1.51043 1.25030 0.94854 0.99308 0.95294 0.86526 0.80193 0.83697 0.77566 1.19642 1.21058 1.20947 1.21323 0.93200 0.91034 1.50400 0.92482 1.19101 0.93826 0.90958 0.97324 1.21313 0.98927 0.91935 1.01041 1.27633 1.11470 1.10687 1.07048 1.70248 0.88608 0.85937 1.12693 1.93092 1.56597 1.84072 1.51344 1.28173 1.09056 1.12836 1.03524 1.22075 0.98588 0.97448 0.95323 1.22482 0.96818 0.95671 1.01023 1.22380 0.96809 0.99601 0.97328 1.21724 0.98523 0.94217 0.98573 0.93067 0.96779 0.96245 0.92133 0.92916 0.86890 0.90242 0.89545 0.90023 0.91086 0.91789 0.91143 0.91741 0.90863 0.91734 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 10 C -0.09 -1.96 5.16 -26.73 -0.14 -2.10 16 11 C -0.43 -7.08 5.60 37.16 0.21 -6.87 16 12 S 1.22 16.76 12.19 -107.50 -1.31 15.45 16 13 O -0.86 -17.34 18.14 -35.23 -0.64 -17.98 16 14 C -0.42 -4.73 3.47 -25.61 -0.09 -4.82 16 15 C -0.10 -0.87 5.66 -25.07 -0.14 -1.01 16 16 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 17 C -0.12 -0.94 6.83 -25.07 -0.17 -1.12 16 18 C -0.09 -0.92 6.48 -25.61 -0.17 -1.08 16 19 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 20 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.11 1.57 7.77 -51.92 -0.40 1.16 16 25 H 0.08 1.42 8.14 -51.92 -0.42 0.99 16 26 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 27 H 0.08 0.59 7.81 -51.93 -0.41 0.19 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.64 7.60 -51.93 -0.39 0.25 16 LS Contribution 291.05 15.07 4.39 4.39 Total: -1.00 -35.59 291.05 -8.88 -44.48 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -5.82 Total: -5.35 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: -1.22 Total: -31.37 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.64 Total: -17.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 16.76 SS G_CDS: -1.31 Total: 15.45 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.59 -8.88 -44.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082599864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.692 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds