Wall clock time and date at job start Sun Mar 29 2020 22:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00238 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.47004 * 179.97438 * 11 10 9 13 13 O 1.42103 * 109.47078 * 296.39075 * 12 11 10 14 14 C 1.81393 * 103.00232 * 179.97438 * 12 11 10 15 15 C 1.54266 * 110.03206 * 302.17075 * 14 12 11 16 16 C 1.54892 * 104.19340 * 217.10362 * 15 14 12 17 17 C 1.54892 * 102.74911 * 37.93877 * 16 15 14 18 18 C 1.53877 * 110.03472 * 184.99780 * 14 12 11 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 21 21 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 22 22 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 23 23 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 24 24 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 25 25 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 26 26 H 1.09007 * 110.01433 * 63.61210 * 14 12 11 27 27 H 1.08993 * 110.48588 * 335.77579 * 15 14 12 28 28 H 1.09000 * 110.48833 * 98.42876 * 15 14 12 29 29 H 1.09006 * 110.75566 * 279.62330 * 16 15 14 30 30 H 1.09001 * 110.75550 * 156.25836 * 16 15 14 31 31 H 1.09003 * 110.48239 * 203.37644 * 17 16 15 32 32 H 1.08997 * 110.59500 * 80.79573 * 17 16 15 33 33 H 1.09000 * 110.03454 * 238.56946 * 18 14 12 34 34 H 1.09000 * 110.03260 * 359.95582 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 8 3.4193 -6.3384 -1.2021 14 6 1.5807 -7.8246 -0.0019 15 6 0.6465 -7.7912 1.2253 16 6 0.5401 -9.2734 1.6621 17 6 1.9753 -9.8043 1.4225 18 6 2.4256 -9.1046 0.1235 19 1 -0.4851 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8719 -3.6045 0.8894 23 1 2.8719 -3.6044 -0.8905 24 1 0.8533 -5.0451 0.8886 25 1 0.8538 -5.0445 -0.8914 26 1 0.9925 -7.8539 -0.9191 27 1 1.0843 -7.1894 2.0217 28 1 -0.3339 -7.4039 0.9480 29 1 -0.1784 -9.8085 1.0411 30 1 0.2718 -9.3472 2.7160 31 1 1.9645 -10.8861 1.2892 32 1 2.6290 -9.5294 2.2502 33 1 2.2467 -9.7554 -0.7324 34 1 3.4835 -8.8493 0.1835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082599864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:06 Heat of formation + Delta-G solvation = -96.908700 kcal Electronic energy + Delta-G solvation = -13893.804692 eV Core-core repulsion = 11529.922844 eV Total energy + Delta-G solvation = -2363.881847 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.60713 -36.83106 -36.32870 -34.04802 -29.97079 -29.64698 -29.10927 -25.38016 -22.34656 -21.57611 -21.15279 -18.65957 -18.26189 -17.32456 -16.62349 -16.40203 -16.17144 -15.56729 -14.88752 -14.51076 -14.35348 -14.20508 -13.84225 -13.34786 -12.86616 -12.73331 -12.52974 -12.48935 -12.26365 -11.95826 -11.84972 -11.75874 -11.70859 -11.59467 -11.35974 -11.28108 -10.58296 -10.56847 -9.20348 -8.21978 -6.33580 0.59401 1.39317 1.40108 1.53794 1.72105 2.40295 2.81805 3.11006 3.63121 3.68300 4.01788 4.07976 4.17677 4.50244 4.55433 4.57392 4.60904 4.73144 4.82733 4.89661 4.97438 5.12609 5.14944 5.17000 5.27476 5.34093 5.34621 5.48513 5.57027 5.67999 5.81984 6.21967 6.83100 7.35995 8.89906 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.055816 B = 0.004809 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.527044 B = 5820.478673 C = 6136.800827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.088 4.088 11 C -0.434 4.434 12 S 1.284 4.716 13 O -0.923 6.923 14 C -0.410 4.410 15 C -0.102 4.102 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.100 4.100 19 H 0.264 0.736 20 H -0.021 1.021 21 H 0.010 0.990 22 H 0.087 0.913 23 H 0.028 0.972 24 H 0.144 0.856 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 -19.253 8.420 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.127 4.127 11 C -0.571 4.571 12 S 1.487 4.513 13 O -0.919 6.919 14 C -0.530 4.530 15 C -0.141 4.141 16 C -0.158 4.158 17 C -0.157 4.157 18 C -0.139 4.139 19 H 0.073 0.927 20 H -0.003 1.003 21 H 0.028 0.972 22 H 0.105 0.895 23 H 0.047 0.953 24 H 0.162 0.838 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.556 -19.107 8.363 21.158 hybrid contribution -1.399 1.092 -2.608 3.155 sum 2.156 -18.015 5.755 19.034 Atomic orbital electron populations 1.70098 1.07800 1.27783 1.51691 1.25992 0.95805 1.03408 0.94591 0.85383 0.79080 0.78613 0.77896 1.18609 1.20733 1.19683 1.21776 0.93665 0.92492 1.50635 0.92173 1.19026 0.94302 0.92730 0.95061 1.21128 0.98000 0.92398 1.01152 1.27652 1.11917 1.09952 1.07596 1.69443 0.86925 0.84976 1.09928 1.92968 1.59821 1.85330 1.53763 1.28088 1.08917 1.11567 1.04395 1.22251 0.97941 0.99229 0.94645 1.22502 0.96835 0.94251 1.02202 1.22416 0.96932 1.00015 0.96301 1.21850 0.98399 0.93466 1.00143 0.92704 1.00303 0.97189 0.89496 0.95286 0.83834 0.92290 0.91189 0.87580 0.91270 0.92245 0.89049 0.90654 0.88919 0.92238 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.55 -32.03 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.09 -3.75 5.16 30.60 0.16 -3.59 16 11 C -0.43 -14.22 5.60 71.98 0.40 -13.81 16 12 S 1.28 34.17 12.19 -56.49 -0.69 33.48 16 13 O -0.92 -37.93 18.14 -148.98 -2.70 -40.64 16 14 C -0.41 -8.68 3.47 31.32 0.11 -8.57 16 15 C -0.10 -1.56 5.66 31.67 0.18 -1.38 16 16 C -0.12 -1.46 6.91 31.89 0.22 -1.24 16 17 C -0.12 -1.42 6.83 31.67 0.22 -1.20 16 18 C -0.10 -1.80 6.48 31.32 0.20 -1.60 16 19 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 20 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 21 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 22 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.14 3.74 7.77 -2.39 -0.02 3.72 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.11 1.12 7.81 -2.39 -0.02 1.11 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.20 7.60 -2.39 -0.02 1.18 16 Total: -1.00 -78.69 291.05 2.29 -76.40 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.04 Total: 2.16 kcal Atomic # 6 Polarization: -63.47 SS G_CDS: 2.33 Total: -61.13 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.28 Total: -57.19 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -2.70 Total: -40.64 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 34.17 SS G_CDS: -0.69 Total: 33.48 kcal Total: -78.69 2.29 -76.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082599864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.514 kcal (2) G-P(sol) polarization free energy of solvation -78.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds