Wall clock time and date at job start Sun Mar 29 2020 21:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.45197 * 109.47208 * 202.72169 * 3 2 1 5 5 C 1.34777 * 117.00031 * 180.02562 * 4 3 2 6 6 O 1.21504 * 119.99877 * 0.02562 * 5 4 3 7 7 C 1.47511 * 120.00005 * 179.97438 * 5 4 3 8 8 C 1.40062 * 119.90007 * 179.97438 * 7 5 4 9 9 C 1.36301 * 120.09854 * 180.25545 * 8 7 5 10 10 C 1.40898 * 119.89747 * 359.51805 * 9 8 7 11 11 C 1.41088 * 120.09801 * 180.23021 * 10 9 8 12 12 H 1.08004 * 120.00254 * 205.25010 * 11 10 9 13 13 C 1.40247 * 120.00057 * 25.25428 * 11 10 9 14 14 N 1.30633 * 119.99971 * 17.90299 * 13 11 10 15 15 Si 1.86808 * 119.99982 * 197.90967 * 13 11 10 16 16 H 1.48494 * 109.47142 * 94.52344 * 15 13 11 17 17 H 1.48508 * 109.46771 * 214.52492 * 15 13 11 18 18 H 1.48496 * 109.47083 * 334.52055 * 15 13 11 19 19 C 1.40895 * 119.80478 * 0.50708 * 10 9 8 20 20 C 1.36298 * 119.89575 * 359.72208 * 19 10 9 21 21 H 4.39845 * 5.48886 * 180.02562 * 4 1 2 22 22 H 1.08994 * 109.47167 * 82.72001 * 3 2 1 23 23 H 1.09005 * 109.47187 * 322.72320 * 3 2 1 24 24 H 1.07996 * 119.95285 * 359.97438 * 8 7 5 25 25 H 1.08003 * 120.04948 * 179.75205 * 9 8 7 26 26 H 0.97002 * 119.99961 * 180.02562 * 14 13 11 27 27 H 1.08003 * 120.05517 * 179.70820 * 19 10 9 28 28 H 1.08001 * 119.94895 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1295 1.2636 0.5288 5 6 4.4655 1.4272 0.5965 6 8 5.2061 0.5391 0.2234 7 6 5.0288 2.6850 1.1224 8 6 6.4176 2.8527 1.1923 9 6 6.9424 4.0112 1.6825 10 6 6.0856 5.0449 2.1096 11 6 6.6243 6.2477 2.6132 12 1 6.0471 6.8540 3.2956 13 6 7.9093 6.6562 2.2274 14 7 8.4667 6.1412 1.1641 15 14 8.8239 7.9367 3.2342 16 1 9.7087 7.2566 4.2138 17 1 9.6440 8.7833 2.3308 18 1 7.8461 8.7881 3.9580 19 6 4.6892 4.8716 2.0380 20 6 4.1732 3.7079 1.5508 21 1 -1.0501 -0.0004 0.0000 22 1 3.0094 -0.1294 -1.0193 23 1 3.0098 -0.8169 0.6224 24 1 7.0736 2.0611 0.8617 25 1 8.0134 4.1380 1.7397 26 1 9.3556 6.4235 0.8975 27 1 4.0286 5.6595 2.3687 28 1 3.1029 3.5743 1.4951 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082689159.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:59 Heat of formation + Delta-G solvation = -21.097612 kcal Electronic energy + Delta-G solvation = -14472.038783 eV Core-core repulsion = 11840.167305 eV Total energy + Delta-G solvation = -2631.871478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.64483 -37.50854 -35.84044 -33.98877 -33.25479 -30.32977 -29.63250 -27.69700 -25.87824 -22.36687 -21.09830 -19.90715 -18.49315 -17.61016 -16.99807 -16.06536 -15.92217 -15.43894 -14.21595 -13.92164 -13.45823 -13.32496 -12.99045 -12.43841 -12.24397 -11.93527 -11.45490 -11.31994 -11.05604 -10.88864 -10.70142 -10.67301 -10.13747 -9.92616 -9.60969 -9.49289 -9.42137 -7.77599 -7.66925 -7.11803 -4.70095 2.01895 2.34361 2.74163 2.85342 2.92012 2.95367 3.00924 3.59887 3.69158 3.73348 4.39582 4.44443 5.34282 5.42531 5.50284 5.79447 5.95418 6.19020 6.23140 6.72510 6.78801 6.92778 7.02658 7.06636 7.38972 7.48013 7.58580 7.76115 7.83999 7.98536 8.33536 8.54010 8.65447 8.69098 9.79862 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.062429 B = 0.005091 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.401585 B = 5499.008667 C = 5862.533860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.186 4.186 3 C 0.176 3.824 4 O -0.357 6.357 5 C 0.516 3.484 6 O -0.549 6.549 7 C -0.275 4.275 8 C -0.031 4.031 9 C -0.185 4.185 10 C 0.132 3.868 11 C -0.434 4.434 12 H 0.088 0.912 13 C 0.072 3.928 14 N -0.763 5.763 15 Si 0.917 3.083 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.258 1.258 19 C -0.239 4.239 20 C -0.027 4.027 21 H 0.223 0.777 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.123 0.877 26 H 0.289 0.711 27 H 0.100 0.900 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.969 -3.479 0.118 6.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.186 4.186 3 C 0.102 3.898 4 O -0.276 6.276 5 C 0.369 3.631 6 O -0.443 6.443 7 C -0.277 4.277 8 C -0.050 4.050 9 C -0.204 4.204 10 C 0.128 3.872 11 C -0.461 4.461 12 H 0.106 0.894 13 C -0.151 4.151 14 N -0.385 5.385 15 Si 0.740 3.260 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.259 4.259 20 C -0.046 4.046 21 H 0.240 0.760 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.121 0.879 25 H 0.140 0.860 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.556 -3.729 -0.163 6.693 hybrid contribution 0.257 0.398 0.189 0.510 sum -5.299 -3.331 0.026 6.259 Atomic orbital electron populations 1.24908 0.95743 0.98123 1.00764 1.22536 0.93748 1.01784 1.00556 1.19320 0.83949 0.86132 1.00370 1.86648 1.26255 1.37382 1.77277 1.21614 0.78528 0.88156 0.74827 1.90708 1.59956 1.44235 1.49375 1.18194 0.93665 0.93593 1.22275 1.20451 0.92313 0.96819 0.95440 1.20968 1.00013 0.92582 1.06797 1.17853 0.91097 0.92036 0.86173 1.19948 0.98911 1.04759 1.22474 0.89395 1.26177 0.97386 0.97445 0.94046 1.69742 1.14993 1.35719 1.18054 0.86146 0.79692 0.79954 0.80226 1.18861 1.19867 1.18135 1.20725 0.95052 0.98247 1.11837 1.20561 0.97476 0.92521 0.94027 0.76049 0.89233 0.89242 0.87940 0.85966 0.89934 0.88159 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 19.25 29.55 0.57 -1.51 15 2 C -0.19 -2.66 13.74 -37.12 -0.51 -3.17 15 3 C 0.18 2.75 5.95 34.37 0.20 2.96 15 4 O -0.36 -7.00 9.41 -40.70 -0.38 -7.38 15 5 C 0.52 11.45 7.89 34.51 0.27 11.72 15 6 O -0.55 -12.82 16.11 -19.27 -0.31 -13.13 15 7 C -0.27 -6.48 5.89 -104.75 -0.62 -7.10 15 8 C -0.03 -0.76 9.52 -39.60 -0.38 -1.14 15 9 C -0.18 -4.64 8.63 -39.27 -0.34 -4.98 15 10 C 0.13 3.32 5.57 -106.80 -0.59 2.73 15 11 C -0.43 -10.57 9.04 -37.75 -0.34 -10.91 15 12 H 0.09 2.02 7.91 -52.48 -0.42 1.61 15 13 C 0.07 1.65 5.13 -17.31 -0.09 1.57 15 14 N -0.76 -18.19 11.00 55.56 0.61 -17.57 15 15 Si 0.92 16.92 29.60 -169.99 -5.03 11.89 15 16 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 17 H -0.27 -4.96 7.11 56.52 0.40 -4.55 15 18 H -0.26 -4.70 7.11 56.52 0.40 -4.29 15 19 C -0.24 -5.61 9.73 -39.28 -0.38 -5.99 15 20 C -0.03 -0.61 9.55 -39.59 -0.38 -0.99 15 21 H 0.22 1.59 7.80 -54.08 -0.42 1.17 15 22 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 23 H 0.09 1.30 8.14 -51.93 -0.42 0.87 15 24 H 0.10 2.39 7.63 -52.49 -0.40 1.99 15 25 H 0.12 3.11 6.20 -52.48 -0.33 2.78 15 26 H 0.29 6.18 8.29 -40.82 -0.34 5.84 15 27 H 0.10 2.16 8.06 -52.48 -0.42 1.73 15 28 H 0.10 2.09 7.59 -52.49 -0.40 1.69 15 LS Contribution 267.08 15.07 4.02 4.02 Total: -1.00 -27.67 267.08 -6.03 -33.71 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -2.36 Total: 5.28 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -2.58 Total: -16.82 kcal Atomic # 7 Polarization: -18.19 SS G_CDS: 0.61 Total: -17.57 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.69 Total: -20.51 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.67 -6.03 -33.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082689159.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.608 kcal (2) G-P(sol) polarization free energy of solvation -27.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds