Wall clock time and date at job start Sun Mar 29 2020 21:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.45197 * 109.47208 * 202.72169 * 3 2 1 5 5 C 1.34777 * 117.00031 * 180.02562 * 4 3 2 6 6 O 1.21504 * 119.99877 * 0.02562 * 5 4 3 7 7 C 1.47511 * 120.00005 * 179.97438 * 5 4 3 8 8 C 1.40062 * 119.90007 * 179.97438 * 7 5 4 9 9 C 1.36301 * 120.09854 * 180.25545 * 8 7 5 10 10 C 1.40898 * 119.89747 * 359.51805 * 9 8 7 11 11 C 1.41088 * 120.09801 * 180.23021 * 10 9 8 12 12 H 1.08004 * 120.00254 * 205.25010 * 11 10 9 13 13 C 1.40247 * 120.00057 * 25.25428 * 11 10 9 14 14 N 1.30633 * 119.99971 * 17.90299 * 13 11 10 15 15 Si 1.86808 * 119.99982 * 197.90967 * 13 11 10 16 16 H 1.48494 * 109.47142 * 94.52344 * 15 13 11 17 17 H 1.48508 * 109.46771 * 214.52492 * 15 13 11 18 18 H 1.48496 * 109.47083 * 334.52055 * 15 13 11 19 19 C 1.40895 * 119.80478 * 0.50708 * 10 9 8 20 20 C 1.36298 * 119.89575 * 359.72208 * 19 10 9 21 21 H 4.39845 * 5.48886 * 180.02562 * 4 1 2 22 22 H 1.08994 * 109.47167 * 82.72001 * 3 2 1 23 23 H 1.09005 * 109.47187 * 322.72320 * 3 2 1 24 24 H 1.07996 * 119.95285 * 359.97438 * 8 7 5 25 25 H 1.08003 * 120.04948 * 179.75205 * 9 8 7 26 26 H 0.97002 * 119.99961 * 180.02562 * 14 13 11 27 27 H 1.08003 * 120.05517 * 179.70820 * 19 10 9 28 28 H 1.08001 * 119.94895 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1295 1.2636 0.5288 5 6 4.4655 1.4272 0.5965 6 8 5.2061 0.5391 0.2234 7 6 5.0288 2.6850 1.1224 8 6 6.4176 2.8527 1.1923 9 6 6.9424 4.0112 1.6825 10 6 6.0856 5.0449 2.1096 11 6 6.6243 6.2477 2.6132 12 1 6.0471 6.8540 3.2956 13 6 7.9093 6.6562 2.2274 14 7 8.4667 6.1412 1.1641 15 14 8.8239 7.9367 3.2342 16 1 9.7087 7.2566 4.2138 17 1 9.6440 8.7833 2.3308 18 1 7.8461 8.7881 3.9580 19 6 4.6892 4.8716 2.0380 20 6 4.1732 3.7079 1.5508 21 1 -1.0501 -0.0004 0.0000 22 1 3.0094 -0.1294 -1.0193 23 1 3.0098 -0.8169 0.6224 24 1 7.0736 2.0611 0.8617 25 1 8.0134 4.1380 1.7397 26 1 9.3556 6.4235 0.8975 27 1 4.0286 5.6595 2.3687 28 1 3.1029 3.5743 1.4951 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082689159.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:59 Heat of formation + Delta-G solvation = -34.577181 kcal Electronic energy + Delta-G solvation = -14472.623301 eV Core-core repulsion = 11840.167305 eV Total energy + Delta-G solvation = -2632.455996 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31182 -39.30230 -37.46841 -35.77501 -34.34859 -32.14412 -31.47911 -29.05749 -27.57291 -24.11628 -22.94017 -21.64688 -19.59586 -19.41088 -18.69503 -17.59842 -17.41770 -17.11884 -15.79767 -15.46360 -15.22769 -14.81381 -14.58881 -14.05317 -13.96165 -13.63358 -13.23681 -12.87944 -12.68727 -12.41859 -12.27421 -11.87147 -11.74497 -11.41127 -11.21844 -11.17338 -11.09502 -9.64859 -9.54165 -8.86068 -6.56225 0.21526 1.13006 1.15343 1.36097 1.41477 1.55430 1.74690 1.87163 2.14665 2.44714 2.66931 3.36092 3.61414 4.06734 4.24389 4.30912 4.37590 4.46556 4.91871 4.92561 4.97337 5.13722 5.19293 5.36592 5.54223 5.75925 5.91327 5.96821 6.13853 6.48203 6.51639 6.69088 6.80918 6.96543 8.09090 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.062429 B = 0.005091 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.401585 B = 5499.008667 C = 5862.533860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.252 4.252 3 C 0.173 3.827 4 O -0.360 6.360 5 C 0.522 3.478 6 O -0.567 6.567 7 C -0.292 4.292 8 C -0.039 4.039 9 C -0.202 4.202 10 C 0.105 3.895 11 C -0.457 4.457 12 H 0.097 0.903 13 C 0.033 3.967 14 N -0.793 5.793 15 Si 0.993 3.007 16 H -0.261 1.261 17 H -0.265 1.265 18 H -0.251 1.251 19 C -0.249 4.249 20 C -0.022 4.022 21 H 0.267 0.733 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.299 0.701 27 H 0.118 0.882 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 -2.880 0.560 7.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.252 4.252 3 C 0.100 3.900 4 O -0.278 6.278 5 C 0.375 3.625 6 O -0.462 6.462 7 C -0.295 4.295 8 C -0.058 4.058 9 C -0.221 4.221 10 C 0.102 3.898 11 C -0.483 4.483 12 H 0.115 0.885 13 C -0.187 4.187 14 N -0.416 5.416 15 Si 0.812 3.188 16 H -0.185 1.185 17 H -0.190 1.190 18 H -0.174 1.174 19 C -0.268 4.268 20 C -0.041 4.041 21 H 0.283 0.717 22 H 0.112 0.888 23 H 0.114 0.886 24 H 0.121 0.879 25 H 0.130 0.870 26 H 0.111 0.889 27 H 0.136 0.864 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.989 -3.147 0.268 7.669 hybrid contribution 0.560 0.146 -0.005 0.579 sum -6.428 -3.001 0.263 7.099 Atomic orbital electron populations 1.25946 0.96467 0.94527 0.97416 1.22556 0.93943 1.05007 1.03668 1.19495 0.85504 0.84422 1.00588 1.86587 1.24409 1.39654 1.77125 1.21320 0.79404 0.87417 0.74350 1.90687 1.60723 1.44703 1.50103 1.18418 0.93625 0.94792 1.22628 1.20530 0.93099 0.96627 0.95503 1.20940 0.99649 0.93305 1.08251 1.18205 0.92090 0.92637 0.86886 1.20285 1.00266 1.04816 1.22912 0.88521 1.27102 0.97577 0.99378 0.94659 1.69778 1.15753 1.36812 1.19239 0.85012 0.78234 0.77100 0.78439 1.18508 1.18988 1.17400 1.20952 0.94714 0.99128 1.12044 1.20761 0.98507 0.91813 0.92973 0.71719 0.88786 0.88641 0.87927 0.87046 0.88929 0.86427 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 19.25 74.32 1.43 -1.07 15 2 C -0.25 -6.75 13.74 31.13 0.43 -6.32 15 3 C 0.17 5.33 5.95 70.18 0.42 5.74 15 4 O -0.36 -13.93 9.41 -56.87 -0.53 -14.47 15 5 C 0.52 23.28 7.89 70.27 0.55 23.83 15 6 O -0.57 -26.76 16.11 19.82 0.32 -26.44 15 7 C -0.29 -13.92 5.89 -19.95 -0.12 -14.04 15 8 C -0.04 -1.94 9.52 22.26 0.21 -1.72 15 9 C -0.20 -10.51 8.63 22.47 0.19 -10.31 15 10 C 0.11 5.39 5.57 -21.28 -0.12 5.27 15 11 C -0.46 -22.29 9.04 23.46 0.21 -22.08 15 12 H 0.10 4.40 7.91 -2.91 -0.02 4.38 15 13 C 0.03 1.50 5.13 85.36 0.44 1.94 15 14 N -0.79 -38.14 11.00 21.88 0.24 -37.90 15 15 Si 0.99 33.85 29.60 68.60 2.03 35.88 15 16 H -0.26 -8.70 7.11 99.48 0.71 -8.00 15 17 H -0.27 -8.64 7.11 99.48 0.71 -7.93 15 18 H -0.25 -8.21 7.11 99.48 0.71 -7.50 15 19 C -0.25 -11.67 9.73 22.47 0.22 -11.45 15 20 C -0.02 -0.99 9.55 22.26 0.21 -0.78 15 21 H 0.27 2.36 7.80 -4.41 -0.03 2.33 15 22 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 23 H 0.10 2.75 8.14 -2.38 -0.02 2.74 15 24 H 0.10 4.98 7.63 -2.91 -0.02 4.96 15 25 H 0.11 5.90 6.20 -2.91 -0.02 5.88 15 26 H 0.30 12.78 8.29 -92.71 -0.77 12.01 15 27 H 0.12 4.96 8.06 -2.91 -0.02 4.94 15 28 H 0.13 4.95 7.59 -2.91 -0.02 4.93 15 Total: -1.00 -59.78 267.08 7.31 -52.47 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 1.17 Total: 21.44 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 4.08 Total: -30.99 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.24 Total: -37.90 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.22 Total: -40.91 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Total: -59.78 7.31 -52.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082689159.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.892 kcal (2) G-P(sol) polarization free energy of solvation -59.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds