Wall clock time and date at job start Sun Mar 29 2020 21:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99960 * 2 1 4 4 H 1.48499 * 109.47027 * 270.00178 * 3 2 1 5 5 H 1.48503 * 109.46911 * 29.99791 * 3 2 1 6 6 H 1.48492 * 109.47150 * 149.99974 * 3 2 1 7 7 C 1.38800 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99816 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00132 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47282 * 180.02562 * 10 9 7 12 12 O 1.20828 * 119.99967 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00022 * 180.02562 * 11 10 9 14 14 C 1.45203 * 117.00124 * 179.97438 * 13 11 10 15 15 C 1.54894 * 110.48415 * 93.24030 * 14 13 11 16 16 C 1.55238 * 102.58338 * 156.67741 * 15 14 13 17 17 C 1.54266 * 104.23333 * 322.08174 * 16 15 14 18 18 C 1.53869 * 106.59800 * 23.61579 * 17 16 15 19 19 H 0.97001 * 120.00672 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47031 * 59.99644 * 10 9 7 21 21 H 1.09003 * 109.46891 * 300.00395 * 10 9 7 22 22 H 1.09002 * 110.43256 * 330.69878 * 14 13 11 23 23 H 1.08996 * 110.75388 * 275.06094 * 15 14 13 24 24 H 1.08993 * 110.76071 * 38.44320 * 15 14 13 25 25 H 1.09005 * 110.46917 * 203.39204 * 16 15 14 26 26 H 1.09007 * 110.58541 * 80.83124 * 16 15 14 27 27 H 1.08999 * 110.03060 * 264.32313 * 17 16 15 28 28 H 1.09006 * 110.06829 * 142.91691 * 17 16 15 29 29 H 1.09001 * 110.02983 * 240.71432 * 18 17 16 30 30 H 1.08996 * 110.07773 * 119.30576 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7956 -5.5015 -0.0011 13 8 2.8407 -6.3388 -0.0008 14 6 2.2611 -7.6701 -0.0008 15 6 2.1205 -8.2000 -1.4495 16 6 2.0932 -9.7387 -1.2457 17 6 3.1067 -9.9889 -0.1100 18 6 3.2135 -8.6737 0.6815 19 1 -0.4851 0.8400 -0.0004 20 1 3.1245 -3.7313 0.8894 21 1 3.1245 -3.7313 -0.8905 22 1 1.2923 -7.6634 0.4987 23 1 1.1913 -7.8510 -1.8999 24 1 2.9785 -7.9054 -2.0537 25 1 2.4067 -10.2495 -2.1562 26 1 1.0977 -10.0683 -0.9481 27 1 4.0781 -10.2532 -0.5279 28 1 2.7503 -10.7880 0.5401 29 1 4.2367 -8.2996 0.6477 30 1 2.9087 -8.8336 1.7157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082692389.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:33 Heat of formation + Delta-G solvation = -125.144614 kcal Electronic energy + Delta-G solvation = -13591.678264 eV Core-core repulsion = 11090.738921 eV Total energy + Delta-G solvation = -2500.939343 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.60894 -38.82681 -36.77070 -34.61969 -31.53748 -29.73094 -28.81030 -27.69228 -23.04521 -21.56233 -21.22790 -19.94310 -18.81750 -17.40747 -17.22674 -16.90068 -16.46922 -16.16715 -15.30024 -14.63525 -14.60469 -14.28437 -13.83033 -13.40475 -13.19255 -13.09138 -12.89493 -12.64232 -12.16887 -12.09906 -11.84137 -11.75159 -11.63212 -11.42054 -11.24553 -11.16237 -10.39394 -8.75160 -8.38056 -6.18375 1.02768 1.11348 1.41197 1.43339 1.55491 1.89838 2.23531 2.97092 3.25477 3.50499 3.55565 3.73545 3.92849 4.15490 4.30930 4.41988 4.43907 4.46542 4.51624 4.69386 4.84022 4.96854 5.01882 5.16650 5.18851 5.40278 5.41394 5.48990 6.17443 6.69869 7.03545 8.71357 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.080200 B = 0.004776 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.045246 B = 5861.272345 C = 6018.194881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.549 4.549 8 H 0.086 0.914 9 S -0.139 6.139 10 C -0.109 4.109 11 C 0.486 3.514 12 O -0.522 6.522 13 O -0.346 6.346 14 C 0.065 3.935 15 C -0.144 4.144 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.118 4.118 19 H 0.273 0.727 20 H 0.121 0.879 21 H 0.121 0.879 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.912 -16.938 -0.693 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.697 4.697 8 H 0.104 0.896 9 S 0.088 5.912 10 C -0.257 4.257 11 C 0.329 3.671 12 O -0.410 6.410 13 O -0.263 6.263 14 C 0.011 3.989 15 C -0.182 4.182 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.155 4.155 19 H 0.082 0.918 20 H 0.139 0.861 21 H 0.139 0.861 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.284 -17.160 -0.682 18.654 hybrid contribution 1.149 1.348 0.003 1.771 sum 8.433 -15.812 -0.679 17.933 Atomic orbital electron populations 1.70162 1.07980 1.28835 1.47694 1.26124 0.95969 1.03287 0.93446 0.84920 0.78194 0.75802 0.78871 1.19224 1.20202 1.18175 1.23200 0.95522 0.91549 1.59428 0.89596 1.85529 1.09357 0.99147 1.97175 1.23091 1.04215 0.90205 1.08191 1.23018 0.84921 0.87673 0.71528 1.90641 1.18362 1.86072 1.45957 1.86544 1.40191 1.15956 1.83654 1.24072 0.98194 0.77956 0.98725 1.22993 1.02282 0.97898 0.94987 1.22341 1.00314 0.92809 0.99981 1.22098 1.00448 0.95867 0.96826 1.22257 0.99755 0.93734 0.99776 0.91813 0.86076 0.86100 0.90821 0.92438 0.90067 0.89311 0.90973 0.89833 0.89678 0.89880 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.22 13.22 21.65 0.29 -54.93 16 2 C 0.02 0.95 5.49 84.86 0.47 1.41 16 3 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 7 C -0.55 -31.10 9.50 67.95 0.65 -30.46 16 8 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 9 S -0.14 -7.66 20.58 -56.49 -1.16 -8.82 16 10 C -0.11 -4.47 6.27 71.23 0.45 -4.03 16 11 C 0.49 19.21 7.97 71.23 0.57 19.77 16 12 O -0.52 -23.98 15.10 21.96 0.33 -23.65 16 13 O -0.35 -11.19 9.95 -51.39 -0.51 -11.70 16 14 C 0.07 1.73 3.18 31.67 0.10 1.83 16 15 C -0.14 -3.31 6.66 32.01 0.21 -3.10 16 16 C -0.12 -1.84 6.84 31.79 0.22 -1.62 16 17 C -0.11 -1.56 6.80 31.32 0.21 -1.34 16 18 C -0.12 -2.19 6.57 31.32 0.21 -1.98 16 19 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 20 H 0.12 4.53 8.14 -2.40 -0.02 4.51 16 21 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16 22 H 0.07 2.21 7.20 -2.39 -0.02 2.20 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 0.90 8.14 -2.38 -0.02 0.89 16 29 H 0.08 1.52 8.07 -2.39 -0.02 1.50 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -69.29 273.65 5.16 -64.12 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.12 Total: 9.39 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 3.08 Total: -19.51 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.29 Total: -54.93 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.18 Total: -35.35 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.82 kcal Total: -69.29 5.16 -64.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692389.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.022 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds