Wall clock time and date at job start Sun Mar 29 2020 21:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48504 * 109.46994 * 239.99995 * 3 2 1 5 5 H 1.48500 * 109.47023 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47442 * 119.99806 * 3 2 1 7 7 C 1.37874 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00517 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47215 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.46759 * 180.02562 * 10 9 7 12 12 O 1.42091 * 109.47392 * 70.94226 * 11 10 9 13 13 C 1.76200 * 102.99852 * 180.02562 * 11 10 9 14 14 C 1.33381 * 125.20818 * 89.99524 * 13 11 10 15 15 C 1.38427 * 114.92374 * 179.97438 * 14 13 11 16 16 C 1.33387 * 114.91991 * 0.25034 * 15 14 13 17 17 S 1.75886 * 109.59194 * 359.63459 * 16 15 14 18 18 H 0.96996 * 120.00439 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.46828 * 59.99949 * 9 7 2 20 20 H 1.09001 * 109.47247 * 300.00916 * 9 7 2 21 21 H 1.08992 * 109.46941 * 60.00634 * 10 9 7 22 22 H 1.08991 * 109.47008 * 299.99903 * 10 9 7 23 23 H 1.08001 * 122.53741 * 359.97438 * 14 13 11 24 24 H 1.08002 * 122.53759 * 179.97438 * 15 14 13 25 25 H 1.08002 * 125.20431 * 179.75072 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0027 11 16 1.3384 -5.2330 0.0034 12 8 0.7232 -5.4253 -1.2629 13 6 2.6271 -6.4347 0.0053 14 6 3.1888 -6.9582 1.0960 15 6 4.1847 -7.8877 0.8503 16 6 4.4353 -8.1151 -0.4399 17 16 3.3691 -7.1279 -1.4308 18 1 -0.4850 0.8400 -0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6247 -2.5563 0.8919 21 1 2.8719 -3.6035 0.8927 22 1 2.8720 -3.6050 -0.8872 23 1 2.8892 -6.6780 2.0951 24 1 4.7213 -8.3874 1.6433 25 1 5.1780 -8.8020 -0.8182 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082788854.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:48 Heat of formation + Delta-G solvation = -15.703045 kcal Electronic energy + Delta-G solvation = -11341.619571 eV Core-core repulsion = 9152.345747 eV Total energy + Delta-G solvation = -2189.273824 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 230.018 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.55873 -35.21537 -33.67601 -30.87558 -29.56260 -25.30826 -24.10024 -21.30982 -19.58732 -18.32265 -16.83005 -16.18767 -15.50202 -14.58001 -14.28539 -13.87670 -13.78988 -12.89550 -12.84429 -12.44194 -12.31704 -11.70364 -11.30382 -10.95787 -10.79321 -10.73991 -10.20500 -10.13020 -9.57377 -9.24020 -9.01587 -8.44724 -8.41459 -7.83249 -6.04924 -4.08886 0.76868 1.68694 1.94730 2.29677 2.69142 3.30502 3.31043 3.35748 3.38330 4.39086 4.44557 4.95558 5.30146 5.35209 5.47365 5.95546 6.01586 6.12023 6.18687 6.42547 6.80847 7.47224 7.58191 7.90116 8.31816 8.95247 9.55232 11.05703 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.048655 B = 0.006011 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.348018 B = 4657.036190 C = 4860.344933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.421 4.421 11 S 1.336 4.664 12 O -0.854 6.854 13 C -0.536 4.536 14 C -0.056 4.056 15 C -0.153 4.153 16 C -0.208 4.208 17 S 0.147 5.853 18 H 0.263 0.737 19 H 0.022 0.978 20 H 0.030 0.970 21 H 0.105 0.895 22 H 0.075 0.925 23 H 0.152 0.848 24 H 0.140 0.860 25 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.425 -14.717 4.943 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.561 4.561 11 S 1.532 4.468 12 O -0.850 6.850 13 C -0.747 4.747 14 C -0.089 4.089 15 C -0.185 4.185 16 C -0.345 4.345 17 S 0.411 5.589 18 H 0.073 0.927 19 H 0.040 0.960 20 H 0.048 0.952 21 H 0.124 0.876 22 H 0.094 0.906 23 H 0.170 0.830 24 H 0.158 0.842 25 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.097 -14.647 3.329 15.862 hybrid contribution 2.317 0.860 -0.265 2.485 sum 7.414 -13.787 3.064 15.951 Atomic orbital electron populations 1.69940 1.06030 1.27011 1.50255 1.25036 0.94921 0.99318 0.95148 0.86596 0.79546 0.82859 0.78653 1.20298 1.21158 1.20091 1.21101 0.93018 0.90350 1.51300 0.92516 1.18800 0.92986 0.90241 0.98032 1.27742 1.09853 1.12137 1.06386 1.69024 0.84194 0.84001 1.09535 1.93078 1.64786 1.82540 1.44599 1.33454 1.21056 1.20315 0.99840 1.19980 0.94850 0.95213 0.98876 1.20379 1.00493 1.01242 0.96373 1.25968 1.04756 1.05966 0.97835 1.84613 1.29028 1.36025 1.09203 0.92706 0.95952 0.95223 0.87643 0.90627 0.83005 0.84184 0.82118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 15 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 15 9 C 0.04 0.97 4.98 -27.88 -0.14 0.83 15 10 C -0.42 -8.43 5.82 37.16 0.22 -8.21 15 11 S 1.34 22.09 13.77 -107.50 -1.48 20.61 15 12 O -0.85 -19.19 17.61 -35.23 -0.62 -19.81 15 13 C -0.54 -7.97 6.20 29.04 0.18 -7.79 15 14 C -0.06 -0.66 10.08 -41.21 -0.42 -1.08 15 15 C -0.15 -1.67 10.18 -41.21 -0.42 -2.09 15 16 C -0.21 -2.43 11.23 29.04 0.33 -2.10 15 17 S 0.15 2.24 23.04 -107.50 -2.48 -0.24 15 18 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 19 H 0.02 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.11 1.84 8.14 -51.93 -0.42 1.42 15 22 H 0.07 1.63 8.14 -51.93 -0.42 1.21 15 23 H 0.15 1.23 8.06 -52.49 -0.42 0.80 15 24 H 0.14 1.12 8.06 -52.49 -0.42 0.69 15 25 H 0.16 1.42 8.06 -52.49 -0.42 1.00 15 LS Contribution 254.42 15.07 3.83 3.83 Total: -1.00 -35.41 254.42 -8.19 -43.60 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: -2.50 Total: -4.83 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: -0.66 Total: -33.82 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.62 Total: -19.81 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 24.33 SS G_CDS: -3.96 Total: 20.37 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -35.41 -8.19 -43.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788854.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.896 kcal (2) G-P(sol) polarization free energy of solvation -35.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds