Wall clock time and date at job start Sun Mar 29 2020 21:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48504 * 109.46994 * 239.99995 * 3 2 1 5 5 H 1.48500 * 109.47023 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47442 * 119.99806 * 3 2 1 7 7 C 1.37874 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00517 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47215 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.46759 * 180.02562 * 10 9 7 12 12 O 1.42091 * 109.47392 * 70.94226 * 11 10 9 13 13 C 1.76200 * 102.99852 * 180.02562 * 11 10 9 14 14 C 1.33381 * 125.20818 * 89.99524 * 13 11 10 15 15 C 1.38427 * 114.92374 * 179.97438 * 14 13 11 16 16 C 1.33387 * 114.91991 * 0.25034 * 15 14 13 17 17 S 1.75886 * 109.59194 * 359.63459 * 16 15 14 18 18 H 0.96996 * 120.00439 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.46828 * 59.99949 * 9 7 2 20 20 H 1.09001 * 109.47247 * 300.00916 * 9 7 2 21 21 H 1.08992 * 109.46941 * 60.00634 * 10 9 7 22 22 H 1.08991 * 109.47008 * 299.99903 * 10 9 7 23 23 H 1.08001 * 122.53741 * 359.97438 * 14 13 11 24 24 H 1.08002 * 122.53759 * 179.97438 * 15 14 13 25 25 H 1.08002 * 125.20431 * 179.75072 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0027 11 16 1.3384 -5.2330 0.0034 12 8 0.7232 -5.4253 -1.2629 13 6 2.6271 -6.4347 0.0053 14 6 3.1888 -6.9582 1.0960 15 6 4.1847 -7.8877 0.8503 16 6 4.4353 -8.1151 -0.4399 17 16 3.3691 -7.1279 -1.4308 18 1 -0.4850 0.8400 -0.0004 19 1 0.6241 -2.5575 -0.8880 20 1 0.6247 -2.5563 0.8919 21 1 2.8719 -3.6035 0.8927 22 1 2.8720 -3.6050 -0.8872 23 1 2.8892 -6.6780 2.0951 24 1 4.7213 -8.3874 1.6433 25 1 5.1780 -8.8020 -0.8182 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788854.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:48 Heat of formation + Delta-G solvation = -41.014976 kcal Electronic energy + Delta-G solvation = -11342.717179 eV Core-core repulsion = 9152.345747 eV Total energy + Delta-G solvation = -2190.371432 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 230.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.51286 -36.83963 -35.73426 -32.86846 -30.57150 -27.32849 -25.12684 -23.19588 -20.62497 -19.41164 -18.76392 -17.72469 -16.66301 -16.49914 -15.84877 -15.55054 -14.99764 -14.35892 -14.04784 -13.87256 -13.55132 -13.33224 -13.01924 -12.77570 -12.62610 -12.03404 -11.97898 -11.74723 -11.54836 -11.04627 -10.58951 -10.11783 -9.55289 -9.31976 -8.21409 -6.34318 -0.27451 0.61271 0.79621 1.16887 1.39625 1.42613 1.50815 1.71667 2.01758 2.40277 3.00231 3.10640 4.15313 4.29471 4.46869 4.53280 4.67361 4.99405 5.07960 5.18875 5.41528 5.50937 5.56161 5.76337 6.18382 6.79132 7.34697 8.89188 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.048655 B = 0.006011 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.348018 B = 4657.036190 C = 4860.344933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.036 3.964 10 C -0.426 4.426 11 S 1.412 4.588 12 O -0.921 6.921 13 C -0.571 4.571 14 C -0.023 4.023 15 C -0.154 4.154 16 C -0.181 4.181 17 S 0.052 5.948 18 H 0.266 0.734 19 H -0.023 1.023 20 H 0.033 0.967 21 H 0.135 0.865 22 H 0.050 0.950 23 H 0.197 0.803 24 H 0.185 0.815 25 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.596 -15.840 7.321 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.564 4.564 11 S 1.611 4.389 12 O -0.917 6.917 13 C -0.784 4.784 14 C -0.056 4.056 15 C -0.185 4.185 16 C -0.318 4.318 17 S 0.316 5.684 18 H 0.075 0.925 19 H -0.004 1.004 20 H 0.051 0.949 21 H 0.153 0.847 22 H 0.070 0.930 23 H 0.214 0.786 24 H 0.202 0.798 25 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 7.259 -15.732 5.711 18.243 hybrid contribution 1.751 0.998 -0.928 2.219 sum 9.010 -14.734 4.783 17.920 Atomic orbital electron populations 1.70071 1.07720 1.28117 1.51146 1.25998 0.95847 1.03366 0.94579 0.85482 0.78291 0.77988 0.79179 1.20106 1.20604 1.18246 1.21584 0.93519 0.91901 1.51196 0.92150 1.18666 0.93584 0.92032 0.95934 1.27718 1.08950 1.13148 1.06568 1.68160 0.82698 0.81506 1.06557 1.92950 1.67821 1.83423 1.47464 1.32841 1.23048 1.21992 1.00517 1.20669 0.92531 0.92680 0.99747 1.20896 0.99958 1.00608 0.97006 1.26348 1.03532 1.04647 0.97302 1.84985 1.32234 1.39096 1.12113 0.92501 1.00435 0.94909 0.84676 0.93047 0.78563 0.79798 0.79049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 15 2 C 0.00 0.02 5.46 84.65 0.46 0.49 15 3 Si 0.97 44.34 29.54 68.60 2.03 46.37 15 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 7 C -0.54 -31.19 9.11 25.60 0.23 -30.95 15 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 15 9 C 0.04 1.92 4.98 29.85 0.15 2.06 15 10 C -0.43 -17.32 5.82 71.98 0.42 -16.90 15 11 S 1.41 46.97 13.77 -56.49 -0.78 46.19 15 12 O -0.92 -43.30 17.61 -148.98 -2.62 -45.92 15 13 C -0.57 -16.08 6.20 66.72 0.41 -15.66 15 14 C -0.02 -0.43 10.08 21.22 0.21 -0.22 15 15 C -0.15 -2.53 10.18 21.22 0.22 -2.31 15 16 C -0.18 -3.59 11.23 66.72 0.75 -2.84 15 17 S 0.05 1.58 23.04 -56.49 -1.30 0.28 15 18 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 19 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 15 20 H 0.03 1.67 8.14 -2.39 -0.02 1.65 15 21 H 0.14 4.54 8.14 -2.39 -0.02 4.52 15 22 H 0.05 2.30 8.14 -2.40 -0.02 2.28 15 23 H 0.20 1.93 8.06 -2.91 -0.02 1.90 15 24 H 0.18 1.57 8.06 -2.91 -0.02 1.54 15 25 H 0.19 2.54 8.06 -2.91 -0.02 2.52 15 Total: -1.00 -80.73 254.42 1.64 -79.09 By element: Atomic # 1 Polarization: -4.40 SS G_CDS: 1.18 Total: -3.22 kcal Atomic # 6 Polarization: -69.20 SS G_CDS: 2.86 Total: -66.34 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.28 Total: -56.45 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -2.62 Total: -45.92 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 48.55 SS G_CDS: -2.08 Total: 46.47 kcal Total: -80.73 1.64 -79.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788854.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.073 kcal (2) G-P(sol) polarization free energy of solvation -80.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds