Wall clock time and date at job start Sun Mar 29 2020 22:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00096 * 2 1 4 4 H 1.48497 * 109.47285 * 269.99762 * 3 2 1 5 5 H 1.48503 * 109.47077 * 30.00236 * 3 2 1 6 6 H 1.48509 * 109.47199 * 149.99833 * 3 2 1 7 7 C 1.37877 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00263 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99768 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46822 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46912 * 180.02562 * 10 9 7 12 12 O 1.42099 * 109.47330 * 296.38874 * 11 10 9 13 13 C 1.81400 * 103.00326 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47039 * 305.00186 * 13 11 10 15 15 C 1.53004 * 109.47130 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.46869 * 60.00215 * 15 14 13 17 17 C 1.53001 * 109.47069 * 299.99822 * 16 15 14 18 18 C 1.52998 * 109.47357 * 185.00158 * 13 11 10 19 19 H 0.97006 * 120.00126 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46778 * 60.00310 * 9 7 2 21 21 H 1.08996 * 109.47313 * 299.99976 * 9 7 2 22 22 H 1.08998 * 109.47375 * 60.00450 * 10 9 7 23 23 H 1.09006 * 109.47492 * 300.00036 * 10 9 7 24 24 H 1.09001 * 109.47059 * 64.99831 * 13 11 10 25 25 H 1.08994 * 109.47079 * 299.99415 * 14 13 11 26 26 H 1.09000 * 109.46985 * 59.99940 * 14 13 11 27 27 H 1.08994 * 109.47105 * 299.99941 * 15 14 13 28 28 H 1.09003 * 109.46914 * 179.97438 * 15 14 13 29 29 H 1.09004 * 109.47377 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.47302 * 59.99635 * 16 15 14 31 31 H 1.09007 * 109.47288 * 300.00249 * 17 16 15 32 32 H 1.08998 * 109.47503 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.47027 * 299.99720 * 18 13 11 34 34 H 1.08994 * 109.47481 * 60.00143 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6367 0.0001 11 16 5.8354 -2.6367 0.0001 12 8 6.3092 -2.0414 -1.2000 13 6 6.2435 -4.4042 0.0011 14 6 5.5519 -5.0867 1.1830 15 6 5.8956 -6.5776 1.1835 16 6 7.4104 -6.7517 1.3091 17 6 8.1020 -6.0693 0.1271 18 6 7.7583 -4.5779 0.1270 19 1 -0.4850 0.8401 0.0004 20 1 3.8751 -0.6798 0.8895 21 1 3.8745 -0.6810 -0.8905 22 1 3.6577 -3.1507 -0.8897 23 1 3.6584 -3.1504 0.8903 24 1 5.9020 -4.8565 -0.9301 25 1 5.8934 -4.6346 2.1141 26 1 4.4727 -4.9630 1.0933 27 1 5.5539 -7.0295 0.2523 28 1 5.4033 -7.0637 2.0258 29 1 7.6554 -7.8139 1.3090 30 1 7.7521 -6.2997 2.2403 31 1 7.7603 -6.5212 -0.8041 32 1 9.1812 -6.1929 0.2168 33 1 8.2510 -4.0918 -0.7151 34 1 8.0998 -4.1258 1.0581 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789279.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:36 Heat of formation + Delta-G solvation = -72.605656 kcal Electronic energy + Delta-G solvation = -14228.769656 eV Core-core repulsion = 11865.941668 eV Total energy + Delta-G solvation = -2362.827988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.25718 -35.19873 -33.70745 -31.37590 -30.86983 -30.69689 -25.63487 -22.82857 -22.64993 -20.75737 -19.87596 -17.24777 -16.77930 -15.80695 -14.87167 -14.50318 -14.35243 -14.20388 -13.89388 -13.86506 -13.22134 -12.64534 -12.48387 -12.24147 -11.92981 -11.55951 -11.43562 -11.22798 -11.03500 -10.88538 -10.60245 -10.35986 -10.26947 -10.06277 -9.93970 -9.38474 -8.99659 -8.57474 -7.71711 -6.07974 -4.07201 1.93153 3.10500 3.31513 3.38467 3.41700 4.19752 4.43107 4.59935 4.67865 4.83590 5.08691 5.19211 5.25492 5.34012 5.44264 5.47094 5.55959 5.67719 5.84011 5.92606 5.96627 6.00949 6.02877 6.06173 6.14402 6.20386 6.33746 6.63882 7.08708 7.20671 7.69846 8.48581 8.95115 9.53317 11.05080 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.048450 B = 0.006071 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.781388 B = 4611.099359 C = 5025.515948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.517 4.517 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.404 4.404 11 S 1.206 4.794 12 O -0.858 6.858 13 C -0.411 4.411 14 C -0.096 4.096 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.092 4.092 19 H 0.264 0.736 20 H 0.028 0.972 21 H 0.017 0.983 22 H 0.076 0.924 23 H 0.112 0.888 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.279 -11.300 6.352 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.035 4.035 10 C -0.544 4.544 11 S 1.409 4.591 12 O -0.853 6.853 13 C -0.527 4.527 14 C -0.135 4.135 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.153 4.153 18 C -0.131 4.131 19 H 0.074 0.926 20 H 0.046 0.954 21 H 0.035 0.965 22 H 0.095 0.905 23 H 0.130 0.870 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.779 -10.395 6.311 19.922 hybrid contribution -0.677 -0.272 -2.022 2.150 sum 15.103 -10.667 4.289 18.981 Atomic orbital electron populations 1.69904 1.06276 1.27023 1.50821 1.25011 0.94768 0.99181 0.94393 0.86835 0.80479 0.83601 0.78842 1.20184 1.21082 1.18650 1.21035 0.88756 0.94586 1.51289 0.90887 1.19246 0.98118 0.89122 0.97040 1.27422 1.14410 1.05842 1.06715 1.70071 0.90178 0.85825 1.13053 1.93077 1.74792 1.66139 1.51280 1.27529 1.01419 1.20309 1.03465 1.21284 1.00267 0.95200 0.96700 1.21522 0.95863 0.96439 1.01694 1.21532 0.95624 0.99886 0.98548 1.21517 0.99668 0.95419 0.98729 1.21164 0.92555 0.96952 1.02384 0.92607 0.95421 0.96503 0.90486 0.87003 0.89738 0.90402 0.90845 0.92366 0.91791 0.92442 0.91707 0.92365 0.92060 0.91868 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.25 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.00 0.08 4.05 -27.88 -0.11 -0.03 16 10 C -0.40 -7.70 5.26 37.16 0.20 -7.50 16 11 S 1.21 18.76 12.66 -107.50 -1.36 17.40 16 12 O -0.86 -18.82 18.14 -35.23 -0.64 -19.46 16 13 C -0.41 -5.13 2.71 -26.73 -0.07 -5.20 16 14 C -0.10 -0.99 4.95 -26.73 -0.13 -1.13 16 15 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 16 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 17 C -0.11 -1.09 5.92 -26.71 -0.16 -1.25 16 18 C -0.09 -1.00 5.21 -26.71 -0.14 -1.14 16 19 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 20 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 21 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 22 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 23 H 0.11 1.84 6.90 -51.92 -0.36 1.48 16 24 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.80 6.51 -51.93 -0.34 0.46 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 282.11 15.07 4.25 4.25 Total: -1.00 -35.35 282.11 -8.51 -43.86 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -5.70 Total: -4.24 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: -1.17 Total: -31.94 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.11 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.64 Total: -19.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.25 kcal Atomic # 16 Polarization: 18.76 SS G_CDS: -1.36 Total: 17.40 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.35 -8.51 -43.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789279.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.748 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds