Wall clock time and date at job start Sun Mar 29 2020 22:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00005 * 2 1 4 4 H 1.48499 * 109.47176 * 270.00151 * 3 2 1 5 5 H 1.48501 * 109.46810 * 30.00251 * 3 2 1 6 6 H 1.48499 * 109.47012 * 149.99756 * 3 2 1 7 7 C 1.37875 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00451 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00318 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47696 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47260 * 179.97438 * 10 9 7 12 12 O 1.42095 * 109.46746 * 63.61848 * 11 10 9 13 13 C 1.81396 * 102.99773 * 180.02562 * 11 10 9 14 14 C 1.53002 * 109.47197 * 185.00326 * 13 11 10 15 15 C 1.53000 * 109.47233 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 17 17 C 1.52999 * 109.47317 * 59.99960 * 16 15 14 18 18 C 1.52997 * 109.47360 * 305.00145 * 13 11 10 19 19 H 0.96995 * 119.99983 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46959 * 59.99683 * 9 7 2 21 21 H 1.09001 * 109.46856 * 300.00302 * 9 7 2 22 22 H 1.09000 * 109.46791 * 60.00051 * 10 9 7 23 23 H 1.08996 * 109.46942 * 300.00564 * 10 9 7 24 24 H 1.09002 * 109.47587 * 65.00053 * 13 11 10 25 25 H 1.08992 * 109.47063 * 59.99974 * 14 13 11 26 26 H 1.09004 * 109.46733 * 299.99687 * 14 13 11 27 27 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 28 28 H 1.09001 * 109.47194 * 180.02562 * 15 14 13 29 29 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 30 30 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 31 31 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 33 33 H 1.09002 * 109.47153 * 300.00180 * 18 13 11 34 34 H 1.09001 * 109.47289 * 60.00264 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0217 -2.6365 -0.0001 11 16 5.8357 -2.6364 -0.0001 12 8 6.3092 -2.0412 1.2001 13 6 6.2437 -4.4039 -0.0011 14 6 7.7587 -4.5776 0.1246 15 6 8.1029 -6.0684 0.1232 16 6 7.4115 -6.7526 1.3041 17 6 5.8966 -6.5789 1.1786 18 6 5.5523 -5.0876 1.1802 19 1 -0.4850 0.8400 0.0004 20 1 3.8745 -0.6808 0.8905 21 1 3.8752 -0.6796 -0.8894 22 1 3.6587 -3.1501 -0.8903 23 1 3.6579 -3.1505 0.8896 24 1 5.9023 -4.8552 -0.9327 25 1 8.1000 -4.1264 1.0561 26 1 8.2512 -4.0906 -0.7170 27 1 7.7615 -6.5193 -0.8087 28 1 9.1821 -6.1922 0.2131 29 1 7.6570 -7.8146 1.3035 30 1 7.7528 -6.3017 2.2359 31 1 5.4040 -7.0659 2.0201 32 1 5.5552 -7.0298 0.2467 33 1 5.8938 -4.6364 2.1118 34 1 4.4731 -4.9639 1.0907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789282.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:38 Heat of formation + Delta-G solvation = -72.266158 kcal Electronic energy + Delta-G solvation = -14283.899622 eV Core-core repulsion = 11921.086356 eV Total energy + Delta-G solvation = -2362.813267 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.25195 -35.14420 -33.69701 -31.37352 -30.85963 -30.71730 -25.62564 -22.79535 -22.67431 -20.72653 -19.80678 -17.27418 -16.81033 -15.80084 -14.82877 -14.48275 -14.37433 -14.19177 -14.08828 -13.69616 -12.99201 -12.59645 -12.50776 -12.25543 -12.09719 -11.56627 -11.21986 -11.20932 -11.05298 -10.88389 -10.53969 -10.45246 -10.27750 -10.13957 -9.87208 -9.37938 -8.98567 -8.57202 -7.68832 -6.07680 -4.06854 1.98706 3.11815 3.29843 3.38251 3.44650 4.23377 4.43540 4.61184 4.65319 4.84350 5.14753 5.17988 5.25753 5.33342 5.45903 5.47535 5.55389 5.68979 5.85029 5.92971 6.00286 6.01970 6.05644 6.07553 6.15181 6.16621 6.36381 6.64520 7.08613 7.22826 7.70564 8.49019 8.95535 9.53711 11.05420 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.051764 B = 0.006042 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.789842 B = 4633.053289 C = 4980.298846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.873 3.127 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.517 4.517 8 H 0.073 0.927 9 C 0.004 3.996 10 C -0.405 4.405 11 S 1.208 4.792 12 O -0.853 6.853 13 C -0.411 4.411 14 C -0.095 4.095 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.114 4.114 18 C -0.116 4.116 19 H 0.264 0.736 20 H 0.021 0.979 21 H 0.022 0.978 22 H 0.109 0.891 23 H 0.079 0.921 24 H 0.118 0.882 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.356 -11.277 -3.685 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.035 4.035 10 C -0.545 4.545 11 S 1.410 4.590 12 O -0.848 6.848 13 C -0.527 4.527 14 C -0.133 4.133 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.154 4.154 19 H 0.074 0.926 20 H 0.040 0.960 21 H 0.040 0.960 22 H 0.127 0.873 23 H 0.098 0.902 24 H 0.136 0.864 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.857 -10.377 -3.661 19.301 hybrid contribution -0.708 -0.251 1.807 1.956 sum 15.149 -10.628 -1.854 18.598 Atomic orbital electron populations 1.69901 1.06286 1.27021 1.50849 1.25010 0.94760 0.99176 0.94404 0.86859 0.80692 0.83625 0.78812 1.19807 1.21165 1.18743 1.21039 0.88797 0.94566 1.51247 0.90911 1.19240 0.98087 0.89169 0.97007 1.27418 1.14547 1.05777 1.06728 1.70033 0.90126 0.85742 1.13102 1.93083 1.74640 1.66100 1.51005 1.27638 1.01118 1.20288 1.03640 1.21183 0.92770 0.96906 1.02448 1.21490 0.99582 0.95433 0.98648 1.21533 0.95661 0.99869 0.98717 1.21499 0.95851 0.96216 1.01659 1.21622 1.00203 0.96105 0.97474 0.92617 0.96031 0.95953 0.87298 0.90174 0.86397 0.91663 0.91097 0.91799 0.92148 0.92319 0.92280 0.92331 0.91849 0.91820 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 0.09 4.05 -27.88 -0.11 -0.02 16 10 C -0.41 -7.63 5.26 37.16 0.20 -7.44 16 11 S 1.21 18.31 12.67 -107.50 -1.36 16.95 16 12 O -0.85 -18.21 18.13 -35.23 -0.64 -18.85 16 13 C -0.41 -4.97 2.71 -26.73 -0.07 -5.04 16 14 C -0.09 -1.05 5.20 -26.73 -0.14 -1.19 16 15 C -0.11 -1.07 5.92 -26.73 -0.16 -1.23 16 16 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 17 C -0.11 -1.27 5.93 -26.71 -0.16 -1.43 16 18 C -0.12 -1.58 4.96 -26.71 -0.13 -1.71 16 19 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 20 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 21 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 22 H 0.11 1.79 8.14 -51.92 -0.42 1.36 16 23 H 0.08 1.61 6.90 -51.93 -0.36 1.25 16 24 H 0.12 1.14 8.14 -51.92 -0.42 0.71 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.99 6.51 -51.93 -0.34 0.65 16 LS Contribution 282.10 15.07 4.25 4.25 Total: -1.00 -35.17 282.10 -8.51 -43.68 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -5.70 Total: -3.38 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: -1.17 Total: -32.70 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.77 Total: -27.14 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.64 Total: -18.85 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: 18.31 SS G_CDS: -1.36 Total: 16.95 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.17 -8.51 -43.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789282.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.583 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds