Wall clock time and date at job start Sun Mar 29 2020 21:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86791 * 120.00490 * 2 1 4 4 H 1.48493 * 109.47488 * 274.99976 * 3 2 1 5 5 H 1.48504 * 109.46927 * 35.00560 * 3 2 1 6 6 H 1.48502 * 109.47044 * 155.00025 * 3 2 1 7 7 C 1.40134 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00485 * 174.97483 * 7 2 1 9 9 C 1.41184 * 120.00199 * 354.98113 * 7 2 1 10 10 O 1.21870 * 119.99943 * 5.01423 * 9 7 2 11 11 N 1.34775 * 120.00252 * 185.02216 * 9 7 2 12 12 C 1.38653 * 120.00142 * 185.52510 * 11 9 7 13 13 C 1.38973 * 120.29150 * 24.86764 * 12 11 9 14 14 C 1.38299 * 120.24737 * 179.97438 * 13 12 11 15 15 C 1.38279 * 120.81028 * 359.57413 * 14 13 12 16 16 C 1.39021 * 120.16446 * 0.68121 * 15 14 13 17 17 N 1.37794 * 133.34121 * 179.20561 * 16 15 14 18 18 H 0.97002 * 125.05766 * 359.95877 * 17 16 15 19 19 C 1.36503 * 109.89083 * 180.02562 * 17 16 15 20 20 C 1.34832 * 109.84979 * 359.97438 * 19 17 16 21 21 C 1.40648 * 119.49000 * 359.49981 * 16 15 14 22 22 H 0.97010 * 119.99367 * 359.97438 * 1 2 3 23 23 H 0.97004 * 120.00181 * 5.52828 * 11 9 7 24 24 H 1.08003 * 119.87611 * 0.02562 * 13 12 11 25 25 H 1.07997 * 119.59589 * 180.02562 * 14 13 12 26 26 H 1.08001 * 119.91187 * 179.88587 * 15 14 13 27 27 H 1.08002 * 125.06900 * 179.97438 * 19 17 16 28 28 H 1.08004 * 126.51479 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.3823 2.1073 -1.3946 5 1 1.4948 2.6197 0.8032 6 1 3.5868 1.4117 0.5917 7 6 2.0069 -1.2137 -0.0005 8 1 3.0838 -1.2156 -0.0825 9 6 1.3050 -2.4340 0.1059 10 8 0.0863 -2.4380 0.1061 11 7 1.9826 -3.5946 0.2073 12 6 1.2981 -4.8003 0.1964 13 6 0.0517 -4.8933 -0.4112 14 6 -0.6301 -6.0965 -0.4220 15 6 -0.0837 -7.2254 0.1605 16 6 1.1591 -7.1599 0.7800 17 7 1.9357 -8.0857 1.4422 18 1 1.6958 -9.0149 1.5840 19 6 3.0923 -7.5006 1.8702 20 6 3.1092 -6.2017 1.5091 21 6 1.8594 -5.9403 0.7999 22 1 -0.4850 0.8402 0.0004 23 1 2.9492 -3.5864 0.2880 24 1 -0.3859 -4.0229 -0.8774 25 1 -1.5978 -6.1570 -0.8975 26 1 -0.6296 -8.1572 0.1453 27 1 3.8767 -8.0032 2.4166 28 1 3.8954 -5.4889 1.7100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083343126.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:15 Heat of formation + Delta-G solvation = -2.247453 kcal Electronic energy + Delta-G solvation = -15087.352715 eV Core-core repulsion = 12488.591393 eV Total energy + Delta-G solvation = -2598.761322 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.02511 -40.05602 -37.35719 -35.28266 -34.50869 -31.88640 -30.11104 -29.55706 -28.00858 -24.03227 -22.81177 -22.05466 -21.11058 -19.57181 -18.71601 -17.73727 -17.08696 -16.33988 -15.95283 -15.66298 -15.51089 -14.96667 -14.50950 -14.38846 -13.81703 -13.40766 -13.22576 -12.90830 -12.77747 -12.65699 -12.33651 -12.08587 -11.99704 -11.19019 -10.89655 -9.83859 -9.71296 -9.05113 -8.38838 -8.02911 -7.01557 0.35815 0.83101 1.39412 1.40279 1.57592 1.92226 2.21178 2.37294 2.37858 3.02750 3.08762 3.67291 4.04436 4.20239 4.38704 4.44027 4.64230 4.82759 4.92945 5.13534 5.17357 5.22132 5.59561 5.76621 5.80650 5.86513 5.91324 6.17772 6.22819 6.56638 6.72033 6.90450 7.41187 8.37964 8.56136 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.045336 B = 0.006751 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.462196 B = 4146.254894 C = 4692.171207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.031 3.969 3 Si 1.004 2.996 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.247 1.247 7 C -0.565 4.565 8 H 0.090 0.910 9 C 0.525 3.475 10 O -0.609 6.609 11 N -0.685 5.685 12 C 0.202 3.798 13 C -0.214 4.214 14 C -0.080 4.080 15 C -0.175 4.175 16 C 0.105 3.895 17 N -0.581 5.581 18 H 0.432 0.568 19 C 0.065 3.935 20 C -0.233 4.233 21 C -0.179 4.179 22 H 0.280 0.720 23 H 0.403 0.597 24 H 0.105 0.895 25 H 0.138 0.862 26 H 0.149 0.851 27 H 0.218 0.782 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.042 -13.128 2.866 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.187 4.187 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.170 1.170 7 C -0.600 4.600 8 H 0.108 0.892 9 C 0.335 3.665 10 O -0.497 6.497 11 N -0.325 5.325 12 C 0.102 3.898 13 C -0.237 4.237 14 C -0.100 4.100 15 C -0.197 4.197 16 C -0.004 4.004 17 N -0.185 5.185 18 H 0.272 0.728 19 C -0.062 4.062 20 C -0.258 4.258 21 C -0.186 4.186 22 H 0.090 0.910 23 H 0.237 0.763 24 H 0.123 0.877 25 H 0.156 0.844 26 H 0.167 0.833 27 H 0.235 0.765 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.062 -13.068 2.891 14.692 hybrid contribution 0.284 0.693 -0.057 0.751 sum 6.346 -12.375 2.834 14.193 Atomic orbital electron populations 1.70179 1.09783 1.29578 1.33117 1.27069 0.95516 1.05232 0.90900 0.84913 0.78938 0.74466 0.79433 1.18449 1.19420 1.16995 1.20482 0.95924 0.90892 1.52662 0.89193 1.17330 0.87381 0.83711 0.78079 1.90595 1.15340 1.86808 1.56970 1.43502 1.10131 1.04235 1.74631 1.17766 0.93147 0.85199 0.93702 1.21205 0.97126 0.99181 1.06160 1.20871 0.99447 0.91027 0.98624 1.20099 0.94396 0.99672 1.05507 1.18129 0.94197 0.88979 0.99075 1.41628 1.16400 1.11838 1.48683 0.72770 1.22419 0.90240 0.92849 1.00655 1.21854 0.97924 0.97634 1.08412 1.19290 0.99370 0.93048 1.06856 0.90980 0.76291 0.87684 0.84413 0.83343 0.76544 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.40 11.73 21.85 0.26 -48.14 15 2 C 0.03 1.73 5.49 85.33 0.47 2.20 15 3 Si 1.00 40.20 29.56 68.60 2.03 42.23 15 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 15 6 H -0.25 -9.17 7.11 99.48 0.71 -8.46 15 7 C -0.56 -32.31 9.28 23.45 0.22 -32.10 15 8 H 0.09 4.58 7.85 -2.91 -0.02 4.56 15 9 C 0.52 31.73 7.34 84.97 0.62 32.36 15 10 O -0.61 -41.58 12.03 -4.89 -0.06 -41.64 15 11 N -0.68 -34.63 5.31 -311.27 -1.65 -36.28 15 12 C 0.20 9.73 6.46 38.84 0.25 9.99 15 13 C -0.21 -10.57 8.70 22.46 0.20 -10.38 15 14 C -0.08 -3.10 10.00 22.29 0.22 -2.88 15 15 C -0.17 -5.62 10.07 22.47 0.23 -5.39 15 16 C 0.10 3.43 7.26 38.98 0.28 3.71 15 17 N -0.58 -12.90 6.06 -187.45 -1.14 -14.04 15 18 H 0.43 5.86 8.96 -92.71 -0.83 5.03 15 19 C 0.07 1.38 11.83 83.18 0.98 2.37 15 20 C -0.23 -7.11 11.06 23.51 0.26 -6.85 15 21 C -0.18 -7.03 6.28 -20.07 -0.13 -7.16 15 22 H 0.28 15.19 8.29 -92.70 -0.77 14.43 15 23 H 0.40 17.59 8.71 -92.71 -0.81 16.78 15 24 H 0.11 6.12 5.77 -2.91 -0.02 6.11 15 25 H 0.14 4.55 8.06 -2.91 -0.02 4.53 15 26 H 0.15 3.48 8.06 -2.91 -0.02 3.46 15 27 H 0.22 2.23 8.06 -2.91 -0.02 2.21 15 28 H 0.15 4.08 8.06 -2.91 -0.02 4.06 15 Total: -1.00 -80.78 251.64 2.62 -78.16 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.42 Total: 33.83 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 3.61 Total: -14.12 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -2.53 Total: -98.46 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.06 Total: -41.64 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -80.78 2.62 -78.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083343126.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.909 kcal (2) G-P(sol) polarization free energy of solvation -80.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds