Wall clock time and date at job start Sun Mar 29 2020 21:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00184 * 2 1 4 4 C 1.53006 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46613 * 55.00228 * 4 3 2 6 6 O 1.42897 * 109.46923 * 295.00333 * 4 3 2 7 7 C 1.53001 * 109.47189 * 175.00009 * 4 3 2 8 8 N 1.46895 * 109.46983 * 184.97980 * 7 4 3 9 9 C 1.46901 * 111.00033 * 175.06847 * 8 7 4 10 10 C 1.53002 * 109.47192 * 185.27054 * 9 8 7 11 11 C 1.50697 * 115.55354 * 64.76141 * 10 9 8 12 12 H 1.07995 * 119.99834 * 266.90018 * 11 10 9 13 13 C 1.37880 * 119.99727 * 86.89353 * 11 10 9 14 14 N 1.31515 * 119.99404 * 180.76782 * 13 11 10 15 15 Si 1.86799 * 120.00251 * 0.77086 * 13 11 10 16 16 H 1.48498 * 109.46797 * 84.77554 * 15 13 11 17 17 H 1.48495 * 109.46877 * 204.77661 * 15 13 11 18 18 H 1.48498 * 109.47084 * 324.77760 * 15 13 11 19 19 C 1.52996 * 117.49500 * 279.08968 * 10 9 8 20 20 C 1.52997 * 117.49447 * 210.43408 * 10 9 8 21 21 H 1.08996 * 109.47494 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46977 * 299.99936 * 1 2 3 23 23 H 1.09007 * 109.47040 * 59.99551 * 1 2 3 24 24 H 1.09006 * 109.47375 * 300.00143 * 3 2 1 25 25 H 1.09003 * 109.47011 * 60.00203 * 3 2 1 26 26 H 0.96695 * 114.00394 * 299.99542 * 6 4 3 27 27 H 1.08998 * 109.46830 * 304.98052 * 7 4 3 28 28 H 1.08995 * 109.46676 * 64.97904 * 7 4 3 29 29 H 1.00895 * 111.00440 * 299.02464 * 8 7 4 30 30 H 1.09010 * 109.47013 * 305.26868 * 9 8 7 31 31 H 1.08994 * 109.47230 * 65.26265 * 9 8 7 32 32 H 0.97006 * 119.99869 * 180.02562 * 14 13 11 33 33 H 1.09003 * 117.50225 * 0.02562 * 19 10 9 34 34 H 1.09001 * 117.50098 * 145.02179 * 19 10 9 35 35 H 1.09007 * 117.49607 * 214.97593 * 20 10 9 36 36 H 1.08996 * 117.50350 * 359.97262 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8514 0.5682 -0.8410 6 8 3.9648 0.5796 1.2219 7 6 4.1574 2.5768 -0.1251 8 7 5.6162 2.4524 -0.2444 9 6 6.2383 3.7614 -0.4843 10 6 7.7366 3.5761 -0.7332 11 6 8.0986 2.8060 -1.9768 12 1 8.2599 1.7395 -1.9237 13 6 8.2236 3.4629 -3.1826 14 7 8.5246 2.7885 -4.2707 15 14 7.9654 5.3109 -3.2706 16 1 9.2302 6.0047 -2.9182 17 1 7.5606 5.6891 -4.6483 18 1 6.9002 5.7079 -2.3151 19 6 8.6403 3.4082 0.4899 20 6 8.6688 4.7130 -0.3098 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6886 1.8464 -0.8900 25 1 1.6886 1.8463 0.8900 26 1 3.7176 1.0751 2.0146 27 1 3.7614 3.0730 -1.0111 28 1 3.9140 3.1647 0.7599 29 1 6.0094 2.0095 0.5725 30 1 5.7800 4.2271 -1.3568 31 1 6.0909 4.3990 0.3873 32 1 8.6130 3.2507 -5.1190 33 1 8.1675 3.4292 1.4718 34 1 9.4969 2.7409 0.3949 35 1 9.5443 4.9036 -0.9307 36 1 8.2148 5.5931 0.1455 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:16 Heat of formation + Delta-G solvation = -96.128999 kcal Electronic energy + Delta-G solvation = -16238.309105 eV Core-core repulsion = 13529.426859 eV Total energy + Delta-G solvation = -2708.882246 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.75682 -38.92847 -37.67948 -35.34624 -34.11424 -31.45994 -28.47503 -27.61283 -26.40309 -24.30478 -23.23886 -22.54650 -20.73486 -18.40550 -17.89613 -17.54310 -16.99599 -16.95101 -16.27415 -15.98674 -15.42522 -15.11325 -14.99383 -14.74909 -14.52076 -13.79305 -13.37154 -13.20773 -13.01581 -12.75908 -12.47963 -12.35177 -12.10512 -11.95104 -11.73918 -11.51941 -10.96486 -10.88632 -10.65554 -10.51580 -10.22484 -9.06426 -8.18910 -6.22369 1.39036 1.39964 1.52087 2.43388 2.59636 3.14527 3.17967 3.52422 3.60433 4.04439 4.09157 4.16080 4.21210 4.38754 4.40602 4.45556 4.49627 4.54082 4.56952 4.61041 4.74123 4.84310 4.84872 4.87646 5.11855 5.14808 5.44537 5.55593 5.79368 6.19096 6.31854 6.45043 6.68886 6.84708 6.90271 7.43735 8.98173 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.005996 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.587111 B = 4668.531797 C = 5022.560685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.037 3.963 4 C 0.117 3.883 5 H 0.080 0.920 6 O -0.567 6.567 7 C 0.038 3.962 8 N -0.688 5.688 9 C 0.109 3.891 10 C -0.022 4.022 11 C -0.457 4.457 12 H 0.023 0.977 13 C 0.010 3.990 14 N -0.959 5.959 15 Si 0.946 3.054 16 H -0.269 1.269 17 H -0.303 1.303 18 H -0.235 1.235 19 C -0.165 4.165 20 C -0.198 4.198 21 H 0.093 0.907 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.384 0.616 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.344 0.656 30 H 0.050 0.950 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.288 3.407 12.569 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C -0.041 4.041 4 C 0.057 3.943 5 H 0.098 0.902 6 O -0.373 6.373 7 C -0.091 4.091 8 N -0.319 5.319 9 C -0.020 4.020 10 C -0.023 4.023 11 C -0.495 4.495 12 H 0.042 0.958 13 C -0.185 4.185 14 N -0.601 5.601 15 Si 0.771 3.229 16 H -0.194 1.194 17 H -0.231 1.231 18 H -0.158 1.158 19 C -0.202 4.202 20 C -0.236 4.236 21 H 0.111 0.889 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.232 0.768 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.163 0.837 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.944 2.643 11.321 18.933 hybrid contribution -0.176 1.384 0.332 1.434 sum -15.120 4.027 11.653 19.509 Atomic orbital electron populations 1.22947 0.79479 1.03758 1.00974 1.87923 1.21490 1.28346 1.95601 1.23238 0.93440 0.85049 1.02336 1.21809 0.91004 0.93715 0.87727 0.90181 1.86648 1.81344 1.53387 1.15955 1.22490 0.88928 0.96039 1.01693 1.59912 1.03246 1.22848 1.45935 1.21490 0.93344 0.89016 0.98122 1.19370 0.89962 0.98514 0.94460 1.20316 1.44255 0.93525 0.91449 0.95842 1.25849 0.94608 1.03145 0.94932 1.70080 1.51791 1.38151 1.00042 0.85819 0.80132 0.80348 0.76597 1.19431 1.23094 1.15845 1.22814 1.02725 0.99060 0.95626 1.23044 1.02831 0.92875 1.04824 0.88851 0.92648 0.93270 0.91456 0.90603 0.76751 0.90561 0.92752 0.83700 0.93137 0.94788 0.93010 0.87753 0.90988 0.91079 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -10.35 10.67 -144.34 -1.54 -11.89 16 3 C 0.04 0.77 5.57 71.98 0.40 1.17 16 4 C 0.12 3.17 3.49 30.60 0.11 3.28 16 5 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 6 O -0.57 -15.31 12.91 -144.34 -1.86 -17.18 16 7 C 0.04 1.03 5.35 86.30 0.46 1.50 16 8 N -0.69 -24.98 6.35 -513.89 -3.26 -28.24 16 9 C 0.11 4.20 5.22 86.30 0.45 4.65 16 10 C -0.02 -0.98 1.03 -52.93 -0.05 -1.04 16 11 C -0.46 -26.51 9.33 25.60 0.24 -26.27 16 12 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 13 C 0.01 0.59 5.47 84.66 0.46 1.05 16 14 N -0.96 -61.96 13.96 21.45 0.30 -61.66 16 15 Si 0.95 45.03 24.77 68.60 1.70 46.73 16 16 H -0.27 -12.26 7.01 99.48 0.70 -11.56 16 17 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 18 H -0.24 -9.99 5.97 99.48 0.59 -9.40 16 19 C -0.17 -6.33 9.96 30.62 0.30 -6.03 16 20 C -0.20 -7.84 7.60 30.62 0.23 -7.60 16 21 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 22 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 23 H 0.05 0.69 8.14 -2.38 -0.02 0.68 16 24 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.38 6.67 9.05 -74.06 -0.67 6.00 16 27 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.34 11.98 8.46 -89.70 -0.76 11.23 16 30 H 0.05 2.09 6.70 -2.38 -0.02 2.07 16 31 H 0.03 1.09 8.09 -2.39 -0.02 1.07 16 32 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 33 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.07 3.06 7.07 -2.38 -0.02 3.04 16 36 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -72.85 298.01 -1.30 -74.15 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.49 Total: 25.74 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 3.85 Total: -27.65 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -2.96 Total: -89.90 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -3.40 Total: -29.07 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.70 Total: 46.73 kcal Total: -72.85 -1.30 -74.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.979 kcal (2) G-P(sol) polarization free energy of solvation -72.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds