Wall clock time and date at job start Sun Mar 29 2020 21:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 113.99604 * 2 1 4 4 C 1.53001 * 109.46732 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46982 * 304.99894 * 4 3 2 6 6 O 1.42893 * 109.47212 * 64.99851 * 4 3 2 7 7 C 1.52998 * 109.47005 * 185.00260 * 4 3 2 8 8 N 1.46896 * 109.47247 * 179.97438 * 7 4 3 9 9 C 1.46897 * 111.00125 * 179.97438 * 8 7 4 10 10 C 1.53004 * 109.47351 * 185.35038 * 9 8 7 11 11 C 1.50702 * 115.54886 * 65.04999 * 10 9 8 12 12 H 1.07996 * 120.00119 * 265.45337 * 11 10 9 13 13 C 1.37878 * 119.99832 * 85.44531 * 11 10 9 14 14 N 1.31515 * 119.99807 * 353.59815 * 13 11 10 15 15 Si 1.86798 * 119.99822 * 173.59582 * 13 11 10 16 16 H 1.48499 * 109.47309 * 90.00620 * 15 13 11 17 17 H 1.48505 * 109.46777 * 210.00387 * 15 13 11 18 18 H 1.48497 * 109.47332 * 329.99783 * 15 13 11 19 19 C 1.52998 * 117.49727 * 279.38477 * 10 9 8 20 20 C 1.52997 * 117.49852 * 210.72110 * 10 9 8 21 21 H 1.08992 * 109.47359 * 59.99993 * 1 2 3 22 22 H 1.08999 * 109.47042 * 299.99835 * 1 2 3 23 23 H 1.09001 * 109.46615 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46941 * 299.99985 * 3 2 1 25 25 H 1.08995 * 109.47086 * 60.00156 * 3 2 1 26 26 H 0.96708 * 114.00209 * 59.99778 * 6 4 3 27 27 H 1.09005 * 109.46952 * 299.99652 * 7 4 3 28 28 H 1.09002 * 109.46984 * 59.99633 * 7 4 3 29 29 H 1.00901 * 111.00064 * 303.95558 * 8 7 4 30 30 H 1.09001 * 109.47603 * 305.35043 * 9 8 7 31 31 H 1.08998 * 109.46941 * 65.35249 * 9 8 7 32 32 H 0.97007 * 119.99900 * 180.02562 * 14 13 11 33 33 H 1.09003 * 117.49913 * 359.97438 * 19 10 9 34 34 H 1.09003 * 117.49891 * 145.02287 * 19 10 9 35 35 H 1.09003 * 117.49623 * 214.97654 * 20 10 9 36 36 H 1.08998 * 117.50189 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8514 0.5683 0.8410 6 8 3.9648 0.5798 -1.2219 7 6 4.1573 2.5770 0.1251 8 7 5.6217 2.4610 0.1251 9 6 6.2544 3.7814 0.2441 10 6 7.7712 3.6344 0.1068 11 6 8.2592 3.1613 -1.2382 12 1 8.4446 2.1107 -1.4064 13 6 8.4688 4.0696 -2.2541 14 7 8.1247 5.3286 -2.0919 15 14 9.2415 3.5121 -3.8608 16 1 8.1747 3.0831 -4.8006 17 1 10.0054 4.6363 -4.4590 18 1 10.1588 2.3737 -3.6001 19 6 8.5514 3.1792 1.3416 20 6 8.6491 4.6310 0.8663 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.6885 1.8464 -0.8899 25 1 1.6886 1.8464 0.8900 26 1 3.7175 1.0754 -2.0146 27 1 3.8413 3.1934 -0.7165 28 1 3.8297 3.0384 1.0567 29 1 5.9354 1.8420 0.8576 30 1 5.8801 4.4360 -0.5430 31 1 6.0177 4.2113 1.2174 32 1 8.2719 5.9676 -2.8067 33 1 7.9843 2.9847 2.2519 34 1 9.4181 2.5378 1.1811 35 1 9.5799 4.9441 0.3933 36 1 8.1462 5.3916 1.4635 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:18 Heat of formation + Delta-G solvation = -72.274021 kcal Electronic energy + Delta-G solvation = -16204.732927 eV Core-core repulsion = 13496.885111 eV Total energy + Delta-G solvation = -2707.847816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.57294 -37.12790 -36.29227 -33.77882 -31.77423 -30.20039 -27.16971 -25.74888 -24.94144 -22.83267 -21.48608 -20.93009 -18.92501 -16.89127 -16.50931 -16.08162 -15.97328 -15.05758 -14.70046 -14.50487 -14.10732 -13.69064 -13.33695 -13.20552 -12.63392 -12.14723 -11.84346 -11.65138 -11.42599 -11.14629 -10.86462 -10.64437 -10.58984 -10.39417 -10.13529 -9.85723 -9.74983 -9.33975 -8.74044 -8.31235 -8.01465 -7.49434 -5.90304 -3.90836 3.39372 3.45248 3.50442 3.54600 4.53194 4.62457 4.78294 5.03272 5.07697 5.18062 5.26728 5.32371 5.39231 5.40379 5.48286 5.52465 5.59550 5.89232 6.17568 6.26647 6.36193 6.52558 6.65565 6.78127 6.89767 7.02084 7.15864 7.51694 7.60916 7.93942 8.02965 8.03759 8.20029 8.62012 9.08728 9.72021 11.19737 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.006029 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.371392 B = 4642.931444 C = 5226.881058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.029 3.971 4 C 0.115 3.885 5 H 0.099 0.901 6 O -0.537 6.537 7 C 0.032 3.968 8 N -0.657 5.657 9 C 0.108 3.892 10 C 0.052 3.948 11 C -0.465 4.465 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.889 5.889 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.275 1.275 19 C -0.215 4.215 20 C -0.159 4.159 21 H 0.039 0.961 22 H 0.038 0.962 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.372 0.628 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.332 0.668 30 H 0.075 0.925 31 H -0.007 1.007 32 H 0.256 0.744 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.566 -4.664 4.737 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C -0.048 4.048 4 C 0.055 3.945 5 H 0.117 0.883 6 O -0.341 6.341 7 C -0.099 4.099 8 N -0.287 5.287 9 C -0.021 4.021 10 C 0.052 3.948 11 C -0.504 4.504 12 H 0.078 0.922 13 C -0.135 4.135 14 N -0.527 5.527 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.200 1.200 19 C -0.253 4.253 20 C -0.197 4.197 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.103 0.897 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.218 0.782 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.149 0.851 30 H 0.094 0.906 31 H 0.011 0.989 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.162 -5.104 4.356 13.890 hybrid contribution -0.328 0.879 -0.235 0.967 sum -12.489 -4.225 4.121 13.814 Atomic orbital electron populations 1.22746 0.81534 1.02625 0.99752 1.87969 1.19179 1.27493 1.95329 1.23357 0.95757 0.85045 1.00682 1.21845 0.88926 0.94378 0.89357 0.88277 1.86632 1.81100 1.51583 1.14763 1.22519 0.91369 0.95697 1.00286 1.60107 1.02245 1.13326 1.53066 1.21568 0.95805 0.88198 0.96521 1.18818 0.87845 0.97386 0.90798 1.20323 1.42692 0.93362 0.93974 0.92170 1.24934 0.95525 0.94947 0.98124 1.70017 1.47434 1.02411 1.32836 0.86650 0.79481 0.78060 0.84090 1.20788 1.21577 1.19981 1.22994 1.04327 0.98764 0.99190 1.22520 1.03167 0.90197 1.03814 0.94188 0.94325 0.89707 0.92921 0.92733 0.78166 0.90915 0.95716 0.85101 0.90632 0.98923 0.93430 0.92246 0.90474 0.90055 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.00 10.67 -40.09 -0.43 -5.43 16 3 C 0.03 0.35 5.57 37.16 0.21 0.55 16 4 C 0.12 1.64 3.45 -26.73 -0.09 1.55 16 5 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 6 O -0.54 -8.88 13.17 -40.09 -0.53 -9.40 16 7 C 0.03 0.49 5.34 -3.83 -0.02 0.47 16 8 N -0.66 -12.88 6.24 -113.78 -0.71 -13.59 16 9 C 0.11 2.40 5.51 -3.82 -0.02 2.38 16 10 C 0.05 1.29 1.55 -155.66 -0.24 1.05 16 11 C -0.47 -12.87 8.74 -34.44 -0.30 -13.17 16 12 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 13 C 0.07 1.83 5.39 -17.82 -0.10 1.74 16 14 N -0.89 -25.39 12.92 55.43 0.72 -24.67 16 15 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.22 -4.74 9.96 -26.69 -0.27 -5.01 16 20 C -0.16 -3.78 9.41 -26.69 -0.25 -4.03 16 21 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.37 5.11 9.05 45.56 0.41 5.53 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.33 6.23 8.79 -39.29 -0.35 5.88 16 30 H 0.08 1.87 8.13 -51.93 -0.42 1.45 16 31 H -0.01 -0.15 8.09 -51.93 -0.42 -0.57 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -30.70 307.68 -6.70 -37.40 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.39 Total: 7.44 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 0.03 Total: -13.09 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.01 Total: -38.26 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.96 Total: -14.84 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.70 -6.70 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.874 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds