Wall clock time and date at job start Sun Mar 29 2020 21:33:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42907 * 113.99604 * 2 1
4 4 C 1.53001 * 109.46732 * 180.02562 * 3 2 1
5 5 H 1.09005 * 109.46982 * 304.99894 * 4 3 2
6 6 O 1.42893 * 109.47212 * 64.99851 * 4 3 2
7 7 C 1.52998 * 109.47005 * 185.00260 * 4 3 2
8 8 N 1.46896 * 109.47247 * 179.97438 * 7 4 3
9 9 C 1.46897 * 111.00125 * 179.97438 * 8 7 4
10 10 C 1.53004 * 109.47351 * 185.35038 * 9 8 7
11 11 C 1.50702 * 115.54886 * 65.04999 * 10 9 8
12 12 H 1.07996 * 120.00119 * 265.45337 * 11 10 9
13 13 C 1.37878 * 119.99832 * 85.44531 * 11 10 9
14 14 N 1.31515 * 119.99807 * 353.59815 * 13 11 10
15 15 Si 1.86798 * 119.99822 * 173.59582 * 13 11 10
16 16 H 1.48499 * 109.47309 * 90.00620 * 15 13 11
17 17 H 1.48505 * 109.46777 * 210.00387 * 15 13 11
18 18 H 1.48497 * 109.47332 * 329.99783 * 15 13 11
19 19 C 1.52998 * 117.49727 * 279.38477 * 10 9 8
20 20 C 1.52997 * 117.49852 * 210.72110 * 10 9 8
21 21 H 1.08992 * 109.47359 * 59.99993 * 1 2 3
22 22 H 1.08999 * 109.47042 * 299.99835 * 1 2 3
23 23 H 1.09001 * 109.46615 * 180.02562 * 1 2 3
24 24 H 1.08993 * 109.46941 * 299.99985 * 3 2 1
25 25 H 1.08995 * 109.47086 * 60.00156 * 3 2 1
26 26 H 0.96708 * 114.00209 * 59.99778 * 6 4 3
27 27 H 1.09005 * 109.46952 * 299.99652 * 7 4 3
28 28 H 1.09002 * 109.46984 * 59.99633 * 7 4 3
29 29 H 1.00901 * 111.00064 * 303.95558 * 8 7 4
30 30 H 1.09001 * 109.47603 * 305.35043 * 9 8 7
31 31 H 1.08998 * 109.46941 * 65.35249 * 9 8 7
32 32 H 0.97007 * 119.99900 * 180.02562 * 14 13 11
33 33 H 1.09003 * 117.49913 * 359.97438 * 19 10 9
34 34 H 1.09003 * 117.49891 * 145.02287 * 19 10 9
35 35 H 1.09003 * 117.49623 * 214.97654 * 20 10 9
36 36 H 1.08998 * 117.50189 * 359.97438 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3056 0.0000
4 6 3.5354 1.1847 -0.0006
5 1 3.8514 0.5683 0.8410
6 8 3.9648 0.5798 -1.2219
7 6 4.1573 2.5770 0.1251
8 7 5.6217 2.4610 0.1251
9 6 6.2544 3.7814 0.2441
10 6 7.7712 3.6344 0.1068
11 6 8.2592 3.1613 -1.2382
12 1 8.4446 2.1107 -1.4064
13 6 8.4688 4.0696 -2.2541
14 7 8.1247 5.3286 -2.0919
15 14 9.2415 3.5121 -3.8608
16 1 8.1747 3.0831 -4.8006
17 1 10.0054 4.6363 -4.4590
18 1 10.1588 2.3737 -3.6001
19 6 8.5514 3.1792 1.3416
20 6 8.6491 4.6310 0.8663
21 1 -0.3633 0.5138 -0.8899
22 1 -0.3633 0.5138 0.8900
23 1 -0.3632 -1.0277 0.0005
24 1 1.6885 1.8464 -0.8899
25 1 1.6886 1.8464 0.8900
26 1 3.7175 1.0754 -2.0146
27 1 3.8413 3.1934 -0.7165
28 1 3.8297 3.0384 1.0567
29 1 5.9354 1.8420 0.8576
30 1 5.8801 4.4360 -0.5430
31 1 6.0177 4.2113 1.2174
32 1 8.2719 5.9676 -2.8067
33 1 7.9843 2.9847 2.2519
34 1 9.4181 2.5378 1.1811
35 1 9.5799 4.9441 0.3933
36 1 8.1462 5.3916 1.4635
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000083854427.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:33:18
Heat of formation + Delta-G solvation = -95.925136 kcal
Electronic energy + Delta-G solvation = -16205.758516 eV
Core-core repulsion = 13496.885111 eV
Total energy + Delta-G solvation = -2708.873406 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.146 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.65440 -38.70432 -37.55786 -35.28542 -33.86589 -31.36912 -28.29611 -27.45435
-26.38688 -24.23260 -22.90162 -22.52591 -20.84388 -18.24744 -17.74348 -17.46272
-16.96074 -16.63885 -16.26487 -15.87742 -15.56544 -15.12265 -14.88104 -14.66493
-14.07813 -13.48605 -13.21178 -13.00890 -12.84573 -12.79955 -12.57106 -12.43225
-12.31481 -12.00400 -11.71172 -11.39515 -10.85292 -10.71662 -10.64199 -10.33853
-9.89982 -9.00293 -8.01908 -6.07201 1.44001 1.45493 1.54956 2.49904
2.61772 3.28163 3.38376 3.60652 3.73827 3.98975 4.15048 4.19042
4.34406 4.45169 4.47367 4.55454 4.56687 4.58079 4.70817 4.75450
4.81499 4.85195 5.00601 5.08712 5.12828 5.29564 5.65652 5.76792
5.90106 6.19193 6.37265 6.53221 6.72600 6.95129 6.95733 7.57713
9.07128
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.029148 B = 0.006029 C = 0.005356
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 960.371392 B = 4642.931444 C = 5226.881058
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.411 6.411
3 C 0.035 3.965
4 C 0.119 3.881
5 H 0.094 0.906
6 O -0.562 6.562
7 C 0.037 3.963
8 N -0.674 5.674
9 C 0.124 3.876
10 C 0.023 3.977
11 C -0.478 4.478
12 H 0.044 0.956
13 C 0.023 3.977
14 N -0.912 5.912
15 Si 0.943 3.057
16 H -0.280 1.280
17 H -0.286 1.286
18 H -0.274 1.274
19 C -0.189 4.189
20 C -0.165 4.165
21 H 0.049 0.951
22 H 0.053 0.947
23 H 0.095 0.905
24 H 0.063 0.937
25 H 0.074 0.926
26 H 0.380 0.620
27 H 0.068 0.932
28 H 0.046 0.954
29 H 0.337 0.663
30 H 0.043 0.957
31 H 0.009 0.991
32 H 0.256 0.744
33 H 0.090 0.910
34 H 0.073 0.927
35 H 0.056 0.944
36 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.684 -5.111 5.396 15.572
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.331 6.331
3 C -0.042 4.042
4 C 0.059 3.941
5 H 0.112 0.888
6 O -0.368 6.368
7 C -0.093 4.093
8 N -0.305 5.305
9 C -0.006 4.006
10 C 0.022 3.978
11 C -0.516 4.516
12 H 0.062 0.938
13 C -0.176 4.176
14 N -0.552 5.552
15 Si 0.770 3.230
16 H -0.206 1.206
17 H -0.211 1.211
18 H -0.199 1.199
19 C -0.226 4.226
20 C -0.203 4.203
21 H 0.067 0.933
22 H 0.071 0.929
23 H 0.113 0.887
24 H 0.082 0.918
25 H 0.092 0.908
26 H 0.228 0.772
27 H 0.087 0.913
28 H 0.064 0.936
29 H 0.154 0.846
30 H 0.062 0.938
31 H 0.027 0.973
32 H 0.065 0.935
33 H 0.108 0.892
34 H 0.092 0.908
35 H 0.075 0.925
36 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -13.291 -5.559 5.018 15.256
hybrid contribution -0.010 0.978 -0.414 1.062
sum -13.301 -4.581 4.604 14.802
Atomic orbital electron populations
1.22946 0.79544 1.03779 1.00905 1.87914 1.21406 1.28157 1.95591
1.23241 0.93731 0.85049 1.02162 1.21823 0.90771 0.93124 0.88357
0.88784 1.86586 1.81750 1.52573 1.15921 1.22520 0.88927 0.96745
1.01132 1.59983 1.04720 1.12068 1.53685 1.21198 0.94208 0.89074
0.96073 1.18958 0.89502 0.98696 0.90597 1.20515 1.42713 0.92610
0.95767 0.93797 1.25538 0.96087 0.95111 1.00836 1.70106 1.48358
1.03095 1.33602 0.85794 0.78683 0.77657 0.80849 1.20573 1.21145
1.19859 1.22976 1.03575 0.97050 0.99046 1.22439 1.02132 0.91505
1.04234 0.93271 0.92878 0.88693 0.91838 0.90776 0.77167 0.91320
0.93564 0.84559 0.93810 0.97317 0.93535 0.89195 0.90828 0.92514
0.90882
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.39 11.01 113.37 1.25 1.63 16
2 O -0.41 -10.03 10.67 -144.34 -1.54 -11.57 16
3 C 0.04 0.76 5.57 71.98 0.40 1.16 16
4 C 0.12 3.21 3.45 30.59 0.11 3.32 16
5 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16
6 O -0.56 -18.22 13.17 -144.34 -1.90 -20.13 16
7 C 0.04 1.07 5.34 86.30 0.46 1.53 16
8 N -0.67 -25.70 6.24 -513.89 -3.21 -28.90 16
9 C 0.12 5.41 5.51 86.31 0.48 5.88 16
10 C 0.02 1.13 1.55 -52.93 -0.08 1.05 16
11 C -0.48 -26.59 8.74 25.60 0.22 -26.37 16
12 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16
13 C 0.02 1.29 5.39 84.65 0.46 1.74 16
14 N -0.91 -52.59 12.92 21.45 0.28 -52.31 16
15 Si 0.94 44.88 29.54 68.60 2.03 46.91 16
16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16
17 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16
18 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16
19 C -0.19 -8.03 9.96 30.62 0.30 -7.72 16
20 C -0.16 -7.75 9.41 30.62 0.29 -7.46 16
21 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
22 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
23 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
26 H 0.38 10.31 9.05 -74.05 -0.67 9.64 16
27 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16
28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16
29 H 0.34 12.15 8.79 -89.69 -0.79 11.36 16
30 H 0.04 2.17 8.13 -2.39 -0.02 2.15 16
31 H 0.01 0.35 8.09 -2.39 -0.02 0.33 16
32 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16
33 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16
34 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16
35 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16
36 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16
Total: -1.00 -64.85 307.68 -0.87 -65.72
By element:
Atomic # 1 Polarization: 25.92 SS G_CDS: -0.40 Total: 25.52 kcal
Atomic # 6 Polarization: -29.11 SS G_CDS: 3.88 Total: -25.23 kcal
Atomic # 7 Polarization: -78.29 SS G_CDS: -2.93 Total: -81.22 kcal
Atomic # 8 Polarization: -28.26 SS G_CDS: -3.44 Total: -31.70 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal
Total: -64.85 -0.87 -65.72 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083854427.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.204 kcal
(2) G-P(sol) polarization free energy of solvation -64.855 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.059 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.925 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds