Wall clock time and date at job start Sun Mar 29 2020 21:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42907 * 113.99604 * 2 1 4 4 C 1.53001 * 109.46732 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46982 * 304.99894 * 4 3 2 6 6 O 1.42893 * 109.47212 * 64.99851 * 4 3 2 7 7 C 1.52998 * 109.47005 * 185.00260 * 4 3 2 8 8 N 1.46896 * 109.47247 * 179.97438 * 7 4 3 9 9 C 1.46897 * 111.00125 * 179.97438 * 8 7 4 10 10 C 1.53004 * 109.47351 * 185.35038 * 9 8 7 11 11 C 1.50702 * 115.54886 * 65.04999 * 10 9 8 12 12 H 1.07996 * 120.00119 * 265.45337 * 11 10 9 13 13 C 1.37878 * 119.99832 * 85.44531 * 11 10 9 14 14 N 1.31515 * 119.99807 * 353.59815 * 13 11 10 15 15 Si 1.86798 * 119.99822 * 173.59582 * 13 11 10 16 16 H 1.48499 * 109.47309 * 90.00620 * 15 13 11 17 17 H 1.48505 * 109.46777 * 210.00387 * 15 13 11 18 18 H 1.48497 * 109.47332 * 329.99783 * 15 13 11 19 19 C 1.52998 * 117.49727 * 279.38477 * 10 9 8 20 20 C 1.52997 * 117.49852 * 210.72110 * 10 9 8 21 21 H 1.08992 * 109.47359 * 59.99993 * 1 2 3 22 22 H 1.08999 * 109.47042 * 299.99835 * 1 2 3 23 23 H 1.09001 * 109.46615 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46941 * 299.99985 * 3 2 1 25 25 H 1.08995 * 109.47086 * 60.00156 * 3 2 1 26 26 H 0.96708 * 114.00209 * 59.99778 * 6 4 3 27 27 H 1.09005 * 109.46952 * 299.99652 * 7 4 3 28 28 H 1.09002 * 109.46984 * 59.99633 * 7 4 3 29 29 H 1.00901 * 111.00064 * 303.95558 * 8 7 4 30 30 H 1.09001 * 109.47603 * 305.35043 * 9 8 7 31 31 H 1.08998 * 109.46941 * 65.35249 * 9 8 7 32 32 H 0.97007 * 119.99900 * 180.02562 * 14 13 11 33 33 H 1.09003 * 117.49913 * 359.97438 * 19 10 9 34 34 H 1.09003 * 117.49891 * 145.02287 * 19 10 9 35 35 H 1.09003 * 117.49623 * 214.97654 * 20 10 9 36 36 H 1.08998 * 117.50189 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8514 0.5683 0.8410 6 8 3.9648 0.5798 -1.2219 7 6 4.1573 2.5770 0.1251 8 7 5.6217 2.4610 0.1251 9 6 6.2544 3.7814 0.2441 10 6 7.7712 3.6344 0.1068 11 6 8.2592 3.1613 -1.2382 12 1 8.4446 2.1107 -1.4064 13 6 8.4688 4.0696 -2.2541 14 7 8.1247 5.3286 -2.0919 15 14 9.2415 3.5121 -3.8608 16 1 8.1747 3.0831 -4.8006 17 1 10.0054 4.6363 -4.4590 18 1 10.1588 2.3737 -3.6001 19 6 8.5514 3.1792 1.3416 20 6 8.6491 4.6310 0.8663 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.6885 1.8464 -0.8899 25 1 1.6886 1.8464 0.8900 26 1 3.7175 1.0754 -2.0146 27 1 3.8413 3.1934 -0.7165 28 1 3.8297 3.0384 1.0567 29 1 5.9354 1.8420 0.8576 30 1 5.8801 4.4360 -0.5430 31 1 6.0177 4.2113 1.2174 32 1 8.2719 5.9676 -2.8067 33 1 7.9843 2.9847 2.2519 34 1 9.4181 2.5378 1.1811 35 1 9.5799 4.9441 0.3933 36 1 8.1462 5.3916 1.4635 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854427.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:18 Heat of formation + Delta-G solvation = -95.925136 kcal Electronic energy + Delta-G solvation = -16205.758516 eV Core-core repulsion = 13496.885111 eV Total energy + Delta-G solvation = -2708.873406 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.65440 -38.70432 -37.55786 -35.28542 -33.86589 -31.36912 -28.29611 -27.45435 -26.38688 -24.23260 -22.90162 -22.52591 -20.84388 -18.24744 -17.74348 -17.46272 -16.96074 -16.63885 -16.26487 -15.87742 -15.56544 -15.12265 -14.88104 -14.66493 -14.07813 -13.48605 -13.21178 -13.00890 -12.84573 -12.79955 -12.57106 -12.43225 -12.31481 -12.00400 -11.71172 -11.39515 -10.85292 -10.71662 -10.64199 -10.33853 -9.89982 -9.00293 -8.01908 -6.07201 1.44001 1.45493 1.54956 2.49904 2.61772 3.28163 3.38376 3.60652 3.73827 3.98975 4.15048 4.19042 4.34406 4.45169 4.47367 4.55454 4.56687 4.58079 4.70817 4.75450 4.81499 4.85195 5.00601 5.08712 5.12828 5.29564 5.65652 5.76792 5.90106 6.19193 6.37265 6.53221 6.72600 6.95129 6.95733 7.57713 9.07128 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.006029 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.371392 B = 4642.931444 C = 5226.881058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.035 3.965 4 C 0.119 3.881 5 H 0.094 0.906 6 O -0.562 6.562 7 C 0.037 3.963 8 N -0.674 5.674 9 C 0.124 3.876 10 C 0.023 3.977 11 C -0.478 4.478 12 H 0.044 0.956 13 C 0.023 3.977 14 N -0.912 5.912 15 Si 0.943 3.057 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.189 4.189 20 C -0.165 4.165 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.380 0.620 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.337 0.663 30 H 0.043 0.957 31 H 0.009 0.991 32 H 0.256 0.744 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.684 -5.111 5.396 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C -0.042 4.042 4 C 0.059 3.941 5 H 0.112 0.888 6 O -0.368 6.368 7 C -0.093 4.093 8 N -0.305 5.305 9 C -0.006 4.006 10 C 0.022 3.978 11 C -0.516 4.516 12 H 0.062 0.938 13 C -0.176 4.176 14 N -0.552 5.552 15 Si 0.770 3.230 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.226 4.226 20 C -0.203 4.203 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.113 0.887 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.228 0.772 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.154 0.846 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.291 -5.559 5.018 15.256 hybrid contribution -0.010 0.978 -0.414 1.062 sum -13.301 -4.581 4.604 14.802 Atomic orbital electron populations 1.22946 0.79544 1.03779 1.00905 1.87914 1.21406 1.28157 1.95591 1.23241 0.93731 0.85049 1.02162 1.21823 0.90771 0.93124 0.88357 0.88784 1.86586 1.81750 1.52573 1.15921 1.22520 0.88927 0.96745 1.01132 1.59983 1.04720 1.12068 1.53685 1.21198 0.94208 0.89074 0.96073 1.18958 0.89502 0.98696 0.90597 1.20515 1.42713 0.92610 0.95767 0.93797 1.25538 0.96087 0.95111 1.00836 1.70106 1.48358 1.03095 1.33602 0.85794 0.78683 0.77657 0.80849 1.20573 1.21145 1.19859 1.22976 1.03575 0.97050 0.99046 1.22439 1.02132 0.91505 1.04234 0.93271 0.92878 0.88693 0.91838 0.90776 0.77167 0.91320 0.93564 0.84559 0.93810 0.97317 0.93535 0.89195 0.90828 0.92514 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -10.03 10.67 -144.34 -1.54 -11.57 16 3 C 0.04 0.76 5.57 71.98 0.40 1.16 16 4 C 0.12 3.21 3.45 30.59 0.11 3.32 16 5 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 6 O -0.56 -18.22 13.17 -144.34 -1.90 -20.13 16 7 C 0.04 1.07 5.34 86.30 0.46 1.53 16 8 N -0.67 -25.70 6.24 -513.89 -3.21 -28.90 16 9 C 0.12 5.41 5.51 86.31 0.48 5.88 16 10 C 0.02 1.13 1.55 -52.93 -0.08 1.05 16 11 C -0.48 -26.59 8.74 25.60 0.22 -26.37 16 12 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 13 C 0.02 1.29 5.39 84.65 0.46 1.74 16 14 N -0.91 -52.59 12.92 21.45 0.28 -52.31 16 15 Si 0.94 44.88 29.54 68.60 2.03 46.91 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 19 C -0.19 -8.03 9.96 30.62 0.30 -7.72 16 20 C -0.16 -7.75 9.41 30.62 0.29 -7.46 16 21 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 22 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.38 10.31 9.05 -74.05 -0.67 9.64 16 27 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.34 12.15 8.79 -89.69 -0.79 11.36 16 30 H 0.04 2.17 8.13 -2.39 -0.02 2.15 16 31 H 0.01 0.35 8.09 -2.39 -0.02 0.33 16 32 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 33 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -64.85 307.68 -0.87 -65.72 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.40 Total: 25.52 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 3.88 Total: -25.23 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -2.93 Total: -81.22 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -3.44 Total: -31.70 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.85 -0.87 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854427.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.204 kcal (2) G-P(sol) polarization free energy of solvation -64.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds