Wall clock time and date at job start Sun Mar 29 2020 22:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00235 * 2 1 4 4 C 1.52995 * 109.47507 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47528 * 179.97438 * 4 3 2 6 6 S 1.81397 * 109.47286 * 180.02562 * 5 4 3 7 7 C 1.81403 * 102.99882 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47144 * 180.02562 * 7 6 5 9 9 C 1.50704 * 115.54769 * 294.73865 * 8 7 6 10 10 H 1.07999 * 120.00523 * 99.48502 * 9 8 7 11 11 C 1.37881 * 119.99579 * 279.20614 * 9 8 7 12 12 N 1.31514 * 120.00444 * 355.36234 * 11 9 8 13 13 Si 1.86804 * 119.99919 * 175.35926 * 11 9 8 14 14 H 1.48498 * 109.47058 * 60.00286 * 13 11 9 15 15 H 1.48496 * 109.47120 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46819 * 300.00125 * 13 11 9 17 17 C 1.53003 * 117.52066 * 80.43586 * 8 7 6 18 18 C 1.52993 * 117.50274 * 149.06862 * 8 7 6 19 19 H 1.09001 * 109.46878 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47213 * 300.00492 * 1 2 3 21 21 H 1.09000 * 109.46611 * 60.00345 * 1 2 3 22 22 H 1.09005 * 109.47184 * 59.99060 * 3 2 1 23 23 H 1.09006 * 109.46800 * 299.99820 * 3 2 1 24 24 H 1.09008 * 109.46919 * 59.99493 * 4 3 2 25 25 H 1.09001 * 109.46851 * 300.00187 * 4 3 2 26 26 H 1.08996 * 109.47121 * 59.99586 * 5 4 3 27 27 H 1.09006 * 109.47015 * 300.00270 * 5 4 3 28 28 H 1.09003 * 109.47246 * 60.00125 * 7 6 5 29 29 H 1.09003 * 109.46997 * 299.99681 * 7 6 5 30 30 H 0.96998 * 120.00274 * 184.99867 * 12 11 9 31 31 H 1.09003 * 117.49776 * 214.97282 * 17 8 7 32 32 H 1.08994 * 117.49517 * 359.97438 * 17 8 7 33 33 H 1.09005 * 117.49876 * 359.97234 * 18 8 7 34 34 H 1.08998 * 117.50319 * 144.97353 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 16 5.9661 2.4390 0.0000 7 6 6.5125 4.1688 0.0000 8 6 8.0416 4.2207 -0.0006 9 6 8.7110 3.6739 1.2339 10 1 9.1171 2.6732 1.2298 11 6 8.8100 4.4534 2.3669 12 7 8.4031 5.7037 2.3426 13 14 9.5221 3.7334 3.9366 14 1 10.9154 3.2840 3.6875 15 1 9.5182 4.7678 5.0020 16 1 8.6983 2.5757 4.3684 17 6 8.7553 4.0195 -1.3390 18 6 8.7080 5.4081 -0.6983 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 1.6886 1.8464 0.8899 23 1 1.6887 1.8463 -0.8901 24 1 3.8575 0.6435 -0.8891 25 1 3.8567 0.6439 0.8909 26 1 3.8359 3.1238 0.8894 27 1 3.8365 3.1227 -0.8905 28 1 6.1320 4.6701 0.8900 29 1 6.1320 4.6700 -0.8900 30 1 8.5388 6.2731 3.1161 31 1 9.7089 3.4917 -1.3265 32 1 8.1354 3.8498 -2.2193 33 1 8.0570 6.1523 -1.1573 34 1 9.6303 5.7941 -0.2642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862479.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:48 Heat of formation + Delta-G solvation = -54.673521 kcal Electronic energy + Delta-G solvation = -13695.840815 eV Core-core repulsion = 11333.790422 eV Total energy + Delta-G solvation = -2362.050393 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.94851 -38.40121 -34.72916 -33.98990 -29.49936 -28.42374 -27.35966 -26.14991 -22.90625 -22.72639 -21.03916 -18.19114 -17.51531 -17.22748 -16.64939 -16.55737 -16.02403 -15.70306 -15.45274 -14.98606 -14.41110 -13.91833 -13.65471 -13.31188 -13.14353 -12.94453 -12.80690 -12.50326 -12.29094 -12.07442 -11.99491 -11.93022 -11.41459 -10.94975 -10.71145 -10.62648 -10.42816 -9.83261 -8.40583 -8.08660 -6.19397 0.87795 1.41849 1.44318 1.50941 1.96509 2.44414 2.84423 3.19271 3.55656 3.87755 4.12263 4.14372 4.21935 4.35012 4.42255 4.50731 4.51909 4.55970 4.61904 4.64445 4.70876 4.85984 4.95812 5.01543 5.04451 5.14203 5.24702 5.57568 5.65369 5.79982 6.22099 6.40405 6.83581 7.47966 8.98440 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029986 B = 0.005644 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.545684 B = 4959.573431 C = 5541.003396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.070 3.930 4 C -0.093 4.093 5 C -0.081 4.081 6 S -0.283 6.283 7 C -0.014 4.014 8 C 0.026 3.974 9 C -0.497 4.497 10 H 0.046 0.954 11 C 0.030 3.970 12 N -0.907 5.907 13 Si 0.943 3.057 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.275 1.275 17 C -0.183 4.183 18 C -0.150 4.150 19 H 0.097 0.903 20 H 0.049 0.951 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.260 0.740 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.482 -5.422 -5.056 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.008 4.008 4 C -0.132 4.132 5 C -0.230 4.230 6 S -0.054 6.054 7 C -0.163 4.163 8 C 0.025 3.975 9 C -0.535 4.535 10 H 0.064 0.936 11 C -0.170 4.170 12 N -0.545 5.545 13 Si 0.769 3.231 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.200 1.200 17 C -0.220 4.220 18 C -0.190 4.190 19 H 0.115 0.885 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.844 -6.363 -4.907 15.151 hybrid contribution -0.257 1.318 1.039 1.698 sum -13.102 -5.045 -3.868 14.563 Atomic orbital electron populations 1.22944 0.79273 1.03885 1.00977 1.87832 1.21702 1.28678 1.95649 1.22488 0.92260 0.84543 1.01468 1.21080 0.93812 0.94635 1.03675 1.23200 0.93579 1.00926 1.05261 1.86951 1.05349 1.15157 1.97987 1.22774 0.99558 0.92243 1.01691 1.18554 0.88330 0.99415 0.91231 1.20533 1.37292 0.99623 0.96078 0.93620 1.25551 0.95448 0.95174 1.00832 1.70059 1.47081 1.06334 1.31025 0.85846 0.79015 0.78246 0.79977 1.19854 1.20822 1.20023 1.22962 1.02066 0.99998 0.97000 1.22502 1.01970 0.90638 1.03850 0.88495 0.93219 0.92884 0.92296 0.91587 0.90732 0.91588 0.90278 0.88961 0.92748 0.91526 0.93117 0.90672 0.89033 0.90418 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.74 10.70 -148.98 -1.59 -11.33 16 3 C 0.07 1.49 5.94 71.98 0.43 1.92 16 4 C -0.09 -2.43 5.59 30.59 0.17 -2.26 16 5 C -0.08 -2.35 5.94 71.98 0.43 -1.93 16 6 S -0.28 -11.31 21.43 -56.49 -1.21 -12.52 16 7 C -0.01 -0.63 5.80 71.98 0.42 -0.21 16 8 C 0.03 1.28 1.34 -52.93 -0.07 1.21 16 9 C -0.50 -27.47 8.47 25.60 0.22 -27.25 16 10 H 0.05 2.60 7.82 -2.91 -0.02 2.57 16 11 C 0.03 1.66 5.44 84.66 0.46 2.12 16 12 N -0.91 -51.35 12.85 21.45 0.28 -51.07 16 13 Si 0.94 44.10 29.54 68.60 2.03 46.12 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 16 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 17 C -0.18 -7.89 9.96 30.60 0.30 -7.59 16 18 C -0.15 -6.94 9.39 30.59 0.29 -6.66 16 19 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 20 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 21 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 22 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.07 1.98 8.14 -2.38 -0.02 1.97 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 30 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 31 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.08 3.30 8.14 -2.38 -0.02 3.28 16 34 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -60.89 302.95 4.42 -56.47 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.04 Total: 11.34 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 3.89 Total: -39.02 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.28 Total: -51.07 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.59 Total: -11.33 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -11.31 SS G_CDS: -1.21 Total: -12.52 kcal Total: -60.89 4.42 -56.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862479.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.798 kcal (2) G-P(sol) polarization free energy of solvation -60.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds