Wall clock time and date at job start Sun Mar 29 2020 21:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99563 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99642 * 3 2 1 6 6 H 1.48502 * 109.47120 * 150.00361 * 3 2 1 7 7 C 1.39028 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00452 * 359.97438 * 7 2 1 9 9 N 1.36886 * 119.99888 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00094 * 179.97438 * 9 7 2 11 11 O 1.21633 * 119.99979 * 0.02562 * 10 9 7 12 12 C 1.47394 * 119.99702 * 180.27612 * 10 9 7 13 13 C 1.39413 * 120.21587 * 359.72624 * 12 10 9 14 14 C 1.38302 * 120.49099 * 180.02562 * 13 12 10 15 15 C 1.37927 * 120.59336 * 359.97438 * 14 13 12 16 16 C 1.39562 * 120.00479 * 0.02837 * 15 14 13 17 17 C 1.46563 * 133.95042 * 179.97438 * 16 15 14 18 18 C 1.34219 * 106.89198 * 180.02562 * 17 16 15 19 19 N 1.36886 * 109.87790 * 0.02562 * 18 17 16 20 20 H 0.97000 * 125.01737 * 180.02562 * 19 18 17 21 21 C 1.37126 * 109.97356 * 359.71887 * 19 18 17 22 22 H 0.97005 * 120.00142 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00169 * 0.02562 * 9 7 2 24 24 H 1.08004 * 119.75737 * 0.02562 * 13 12 10 25 25 H 1.08002 * 119.70196 * 180.02562 * 14 13 12 26 26 H 1.08004 * 119.99505 * 180.02562 * 15 14 13 27 27 H 1.08001 * 126.55788 * 0.02562 * 17 16 15 28 28 H 1.07999 * 125.06517 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4952 2.0463 -1.4002 5 1 1.4451 2.6527 0.6999 6 1 3.5453 1.4402 0.7000 7 6 2.0089 -1.2040 0.0005 8 1 1.4689 -2.1394 0.0014 9 7 3.3777 -1.2040 0.0011 10 6 4.0516 -2.3712 0.0021 11 8 3.4435 -3.4246 0.0021 12 6 5.5255 -2.3711 0.0088 13 6 6.2271 -1.1664 0.0084 14 6 7.6101 -1.1597 0.0141 15 6 8.3178 -2.3435 0.0209 16 6 7.6386 -3.5627 0.0215 17 6 8.0652 -4.9648 0.0272 18 6 6.9501 -5.7118 0.0240 19 7 5.8470 -4.9014 0.0162 20 1 4.9281 -5.2120 0.0130 21 6 6.2325 -3.5854 0.0204 22 1 -0.4850 0.8401 -0.0004 23 1 3.8628 -0.3640 0.0014 24 1 5.6866 -0.2313 0.0035 25 1 8.1407 -0.2189 0.0141 26 1 9.3977 -2.3270 0.0258 27 1 9.0825 -5.3277 0.0329 28 1 6.9266 -6.7916 0.0264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084059576.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:17 Heat of formation + Delta-G solvation = 22.145737 kcal Electronic energy + Delta-G solvation = -15099.255314 eV Core-core repulsion = 12501.551759 eV Total energy + Delta-G solvation = -2597.703554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96243 -38.34319 -36.31439 -34.15404 -31.98213 -31.40229 -29.16190 -28.51812 -25.26475 -22.96734 -21.42977 -20.68344 -19.54704 -18.78456 -17.15769 -16.28045 -15.74473 -15.11132 -14.45047 -14.37482 -13.93332 -13.36765 -13.35415 -13.04958 -12.87245 -12.33013 -12.20967 -11.47487 -11.39270 -11.22426 -11.04900 -10.67970 -10.08416 -9.75662 -9.37490 -8.68145 -8.33271 -7.96693 -7.44882 -6.48355 -3.92277 1.11422 1.93938 2.83442 2.97680 3.01597 3.08072 3.56656 3.72182 3.98099 4.43335 4.54208 4.93444 5.18815 5.20243 5.29302 5.40393 5.57914 5.79603 5.80535 6.09213 6.17972 6.24324 6.63312 6.80574 6.94057 7.01797 7.38870 7.47596 7.87282 8.04552 8.44682 8.79033 9.26823 9.70652 10.63358 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.039465 B = 0.007689 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.321421 B = 3640.769159 C = 4340.238406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.043 3.957 3 Si 0.877 3.123 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.300 4.300 8 H 0.123 0.877 9 N -0.567 5.567 10 C 0.479 3.521 11 O -0.595 6.595 12 C -0.108 4.108 13 C -0.092 4.092 14 C -0.149 4.149 15 C -0.071 4.071 16 C -0.120 4.120 17 C -0.215 4.215 18 C 0.047 3.953 19 N -0.575 5.575 20 H 0.428 0.572 21 C 0.140 3.860 22 H 0.277 0.723 23 H 0.373 0.627 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.143 0.857 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.463 -3.057 0.028 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.162 4.162 3 Si 0.703 3.297 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.429 4.429 8 H 0.141 0.859 9 N -0.203 5.203 10 C 0.269 3.731 11 O -0.482 6.482 12 C -0.114 4.114 13 C -0.113 4.113 14 C -0.169 4.169 15 C -0.090 4.090 16 C -0.124 4.124 17 C -0.241 4.241 18 C -0.081 4.081 19 N -0.177 5.177 20 H 0.269 0.731 21 C 0.029 3.971 22 H 0.088 0.912 23 H 0.208 0.792 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.161 0.839 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 14.637 -3.684 0.023 15.093 hybrid contribution 0.088 1.250 0.022 1.253 sum 14.725 -2.434 0.046 14.925 Atomic orbital electron populations 1.69603 1.05780 1.28046 1.47053 1.25123 0.95590 0.98303 0.97143 0.86685 0.80047 0.83628 0.79348 1.19118 1.19706 1.19125 1.19533 0.79254 0.96893 1.47237 0.85913 1.42175 1.07600 1.06474 1.64016 1.17514 0.85661 0.84538 0.85401 1.90534 1.69454 1.30840 1.57338 1.19330 0.93796 0.90947 1.07317 1.21010 0.94367 0.96138 0.99803 1.20702 0.93600 0.97667 1.04892 1.20484 0.98960 0.90442 0.99145 1.19187 0.91731 0.93825 1.07684 1.21577 0.97881 0.90642 1.13969 1.21877 0.85862 0.96464 1.03922 1.42011 1.09608 1.04062 1.62034 0.73149 1.17970 0.92847 0.84562 1.01706 0.91203 0.79223 0.86055 0.85989 0.86261 0.83899 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.74 13.95 55.50 0.77 -23.96 15 2 C 0.04 1.18 5.50 -17.45 -0.10 1.08 15 3 Si 0.88 19.06 27.74 -169.99 -4.72 14.35 15 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 6 H -0.27 -5.29 6.52 56.52 0.37 -4.93 15 7 C -0.30 -8.48 10.16 -15.00 -0.15 -8.63 15 8 H 0.12 3.92 7.38 -52.49 -0.39 3.53 15 9 N -0.57 -13.99 5.03 -11.97 -0.06 -14.05 15 10 C 0.48 11.68 7.71 -12.53 -0.10 11.58 15 11 O -0.59 -16.04 14.73 5.25 0.08 -15.96 15 12 C -0.11 -2.20 5.88 -104.87 -0.62 -2.82 15 13 C -0.09 -1.59 9.52 -39.12 -0.37 -1.96 15 14 C -0.15 -2.16 10.00 -39.67 -0.40 -2.55 15 15 C -0.07 -1.01 10.09 -39.20 -0.40 -1.41 15 16 C -0.12 -1.94 6.37 -105.15 -0.67 -2.61 15 17 C -0.22 -2.91 11.09 -37.64 -0.42 -3.32 15 18 C 0.05 0.61 11.82 -16.71 -0.20 0.42 15 19 N -0.57 -9.72 5.87 -10.44 -0.06 -9.78 15 20 H 0.43 7.44 7.54 -40.82 -0.31 7.13 15 21 C 0.14 2.65 6.87 -83.74 -0.58 2.08 15 22 H 0.28 7.26 8.31 -40.82 -0.34 6.92 15 23 H 0.37 8.16 3.78 -40.82 -0.15 8.00 15 24 H 0.12 1.94 6.38 -52.48 -0.33 1.61 15 25 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 26 H 0.12 1.32 8.06 -52.48 -0.42 0.90 15 27 H 0.14 1.49 8.06 -52.49 -0.42 1.06 15 28 H 0.17 1.48 8.06 -52.49 -0.42 1.06 15 LS Contribution 248.70 15.07 3.75 3.75 Total: -1.00 -32.00 248.70 -6.27 -38.27 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -2.04 Total: 15.55 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.99 Total: -8.15 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.65 Total: -47.79 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.08 Total: -15.96 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.72 Total: 14.35 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.00 -6.27 -38.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084059576.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.414 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds