Wall clock time and date at job start Sun Mar 29 2020 21:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99563 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99642 * 3 2 1 6 6 H 1.48502 * 109.47120 * 150.00361 * 3 2 1 7 7 C 1.39028 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00452 * 359.97438 * 7 2 1 9 9 N 1.36886 * 119.99888 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00094 * 179.97438 * 9 7 2 11 11 O 1.21633 * 119.99979 * 0.02562 * 10 9 7 12 12 C 1.47394 * 119.99702 * 180.27612 * 10 9 7 13 13 C 1.39413 * 120.21587 * 359.72624 * 12 10 9 14 14 C 1.38302 * 120.49099 * 180.02562 * 13 12 10 15 15 C 1.37927 * 120.59336 * 359.97438 * 14 13 12 16 16 C 1.39562 * 120.00479 * 0.02837 * 15 14 13 17 17 C 1.46563 * 133.95042 * 179.97438 * 16 15 14 18 18 C 1.34219 * 106.89198 * 180.02562 * 17 16 15 19 19 N 1.36886 * 109.87790 * 0.02562 * 18 17 16 20 20 H 0.97000 * 125.01737 * 180.02562 * 19 18 17 21 21 C 1.37126 * 109.97356 * 359.71887 * 19 18 17 22 22 H 0.97005 * 120.00142 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00169 * 0.02562 * 9 7 2 24 24 H 1.08004 * 119.75737 * 0.02562 * 13 12 10 25 25 H 1.08002 * 119.70196 * 180.02562 * 14 13 12 26 26 H 1.08004 * 119.99505 * 180.02562 * 15 14 13 27 27 H 1.08001 * 126.55788 * 0.02562 * 17 16 15 28 28 H 1.07999 * 125.06517 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4952 2.0463 -1.4002 5 1 1.4451 2.6527 0.6999 6 1 3.5453 1.4402 0.7000 7 6 2.0089 -1.2040 0.0005 8 1 1.4689 -2.1394 0.0014 9 7 3.3777 -1.2040 0.0011 10 6 4.0516 -2.3712 0.0021 11 8 3.4435 -3.4246 0.0021 12 6 5.5255 -2.3711 0.0088 13 6 6.2271 -1.1664 0.0084 14 6 7.6101 -1.1597 0.0141 15 6 8.3178 -2.3435 0.0209 16 6 7.6386 -3.5627 0.0215 17 6 8.0652 -4.9648 0.0272 18 6 6.9501 -5.7118 0.0240 19 7 5.8470 -4.9014 0.0162 20 1 4.9281 -5.2120 0.0130 21 6 6.2325 -3.5854 0.0204 22 1 -0.4850 0.8401 -0.0004 23 1 3.8628 -0.3640 0.0014 24 1 5.6866 -0.2313 0.0035 25 1 8.1407 -0.2189 0.0141 26 1 9.3977 -2.3270 0.0258 27 1 9.0825 -5.3277 0.0329 28 1 6.9266 -6.7916 0.0264 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084059576.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:16 Heat of formation + Delta-G solvation = -0.720657 kcal Electronic energy + Delta-G solvation = -15100.246875 eV Core-core repulsion = 12501.551759 eV Total energy + Delta-G solvation = -2598.695116 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.20394 -40.16416 -37.60403 -36.16984 -33.93862 -32.77863 -30.41261 -29.72571 -27.15752 -24.44397 -22.68336 -21.96141 -21.29962 -20.52396 -18.53210 -17.90728 -17.08083 -16.87733 -15.91762 -15.79747 -15.46026 -14.99663 -14.84099 -14.76630 -14.29313 -13.83810 -13.47921 -13.08485 -12.68638 -12.52941 -12.50436 -12.28508 -11.97239 -11.64281 -10.65584 -10.60418 -10.37587 -9.18292 -8.65769 -8.52839 -6.10297 -0.17780 0.70890 1.24771 1.30755 1.38992 1.67350 2.14998 2.17805 2.38843 2.79679 2.91604 3.22364 3.82254 3.95610 4.08857 4.19261 4.39969 4.54930 4.71590 4.93005 5.00475 5.08163 5.40419 5.46478 5.59349 5.78403 5.86796 5.91628 6.24698 6.45657 6.65795 6.73683 7.23936 7.78257 8.63822 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.039465 B = 0.007689 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.321421 B = 3640.769159 C = 4340.238406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.957 3.043 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.234 1.234 7 C -0.333 4.333 8 H 0.060 0.940 9 N -0.571 5.571 10 C 0.482 3.518 11 O -0.633 6.633 12 C -0.155 4.155 13 C -0.084 4.084 14 C -0.150 4.150 15 C -0.048 4.048 16 C -0.135 4.135 17 C -0.209 4.209 18 C 0.044 3.956 19 N -0.593 5.593 20 H 0.419 0.581 21 C 0.107 3.893 22 H 0.284 0.716 23 H 0.389 0.611 24 H 0.131 0.869 25 H 0.165 0.835 26 H 0.163 0.837 27 H 0.181 0.819 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.279 -1.685 0.070 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.209 4.209 3 Si 0.775 3.225 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.157 1.157 7 C -0.462 4.462 8 H 0.079 0.921 9 N -0.210 5.210 10 C 0.273 3.727 11 O -0.522 6.522 12 C -0.161 4.161 13 C -0.104 4.104 14 C -0.169 4.169 15 C -0.067 4.067 16 C -0.140 4.140 17 C -0.234 4.234 18 C -0.082 4.082 19 N -0.195 5.195 20 H 0.257 0.743 21 C -0.004 4.004 22 H 0.094 0.906 23 H 0.226 0.774 24 H 0.149 0.851 25 H 0.182 0.818 26 H 0.181 0.819 27 H 0.199 0.801 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 19.506 -2.332 0.067 19.645 hybrid contribution -1.229 0.597 0.006 1.367 sum 18.276 -1.735 0.073 18.359 Atomic orbital electron populations 1.69760 1.08020 1.29721 1.48446 1.26140 0.96543 1.02675 0.95504 0.85488 0.79658 0.76823 0.80492 1.17504 1.18954 1.15744 1.19070 0.81046 0.95411 1.50678 0.92140 1.41913 1.06113 1.07369 1.65555 1.18443 0.87839 0.83749 0.82650 1.90491 1.71145 1.32345 1.58177 1.19129 0.90877 0.93390 1.12687 1.21294 0.95998 0.95166 0.97959 1.21150 0.92210 0.99755 1.03758 1.21087 1.01137 0.89376 0.95101 1.19716 0.90482 0.96068 1.07776 1.22059 0.99545 0.89132 1.12626 1.22662 0.84693 0.98215 1.02636 1.42257 1.10163 1.04308 1.62737 0.74317 1.18371 0.94496 0.84838 1.02693 0.90641 0.77405 0.85116 0.81750 0.81912 0.80126 0.77581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.30 13.95 21.68 0.30 -55.00 15 2 C -0.01 -0.46 5.50 84.95 0.47 0.01 15 3 Si 0.96 39.04 27.74 68.60 1.90 40.95 15 4 H -0.25 -9.63 7.11 99.48 0.71 -8.93 15 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 6 H -0.23 -8.23 6.52 99.48 0.65 -7.58 15 7 C -0.33 -20.13 10.16 84.09 0.85 -19.28 15 8 H 0.06 4.29 7.38 -2.91 -0.02 4.27 15 9 N -0.57 -29.27 5.03 -310.01 -1.56 -30.83 15 10 C 0.48 24.69 7.71 86.65 0.67 25.36 15 11 O -0.63 -36.80 14.73 -4.14 -0.06 -36.86 15 12 C -0.15 -6.32 5.88 -20.03 -0.12 -6.44 15 13 C -0.08 -2.68 9.52 22.57 0.21 -2.47 15 14 C -0.15 -3.59 10.00 22.21 0.22 -3.37 15 15 C -0.05 -1.13 10.09 22.52 0.23 -0.90 15 16 C -0.14 -3.95 6.37 -20.21 -0.13 -4.08 15 17 C -0.21 -4.82 11.09 23.53 0.26 -4.56 15 18 C 0.04 1.05 11.82 82.99 0.98 2.03 15 19 N -0.59 -20.14 5.87 -186.95 -1.10 -21.24 15 20 H 0.42 15.39 7.54 -92.71 -0.70 14.69 15 21 C 0.11 4.00 6.87 39.45 0.27 4.27 15 22 H 0.28 15.44 8.31 -92.70 -0.77 14.67 15 23 H 0.39 16.86 3.78 -92.71 -0.35 16.51 15 24 H 0.13 3.81 6.38 -2.91 -0.02 3.79 15 25 H 0.16 2.58 8.06 -2.91 -0.02 2.56 15 26 H 0.16 2.41 8.06 -2.91 -0.02 2.39 15 27 H 0.18 2.71 8.06 -2.91 -0.02 2.68 15 28 H 0.21 3.00 8.06 -2.91 -0.02 2.98 15 Total: -1.00 -77.67 248.70 3.52 -74.15 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: 0.11 Total: 38.25 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 3.92 Total: -9.42 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -2.36 Total: -107.07 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.06 Total: -36.86 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.90 Total: 40.95 kcal Total: -77.67 3.52 -74.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084059576.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.430 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds