Wall clock time and date at job start Sun Mar 29 2020 21:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99907 * 2 1 4 4 H 1.48499 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47366 * 299.99537 * 3 2 1 6 6 H 1.48498 * 109.47275 * 59.99753 * 3 2 1 7 7 C 1.37878 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00395 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99609 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47255 * 179.97438 * 9 7 2 11 11 C 1.50690 * 109.47663 * 180.02562 * 10 9 7 12 12 C 1.38255 * 119.97863 * 100.00033 * 11 10 9 13 13 C 1.38199 * 120.09097 * 179.72460 * 12 11 10 14 14 C 1.38448 * 120.04557 * 359.97438 * 13 12 11 15 15 F 1.35095 * 120.02611 * 180.02562 * 14 13 12 16 16 C 1.38582 * 119.95626 * 0.02562 * 14 13 12 17 17 F 1.35096 * 120.04458 * 179.97438 * 16 14 13 18 18 C 1.38412 * 119.97973 * 279.73013 * 11 10 9 19 19 F 1.35095 * 120.01859 * 0.27373 * 18 11 10 20 20 H 0.96999 * 119.99965 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47017 * 60.00831 * 9 7 2 22 22 H 1.09002 * 109.47689 * 299.99842 * 9 7 2 23 23 H 1.09007 * 109.46674 * 59.99854 * 10 9 7 24 24 H 1.09005 * 109.47161 * 300.00722 * 10 9 7 25 25 H 1.07998 * 119.95068 * 359.74606 * 12 11 10 26 26 H 1.07999 * 119.98029 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4918 -4.9671 0.0020 12 6 1.3260 -5.6696 -1.1772 13 6 0.6404 -6.8695 -1.1784 14 6 0.1185 -7.3709 0.0019 15 9 -0.5512 -8.5441 0.0004 16 6 0.2836 -6.6683 1.1850 17 9 -0.2253 -7.1557 2.3376 18 6 0.9711 -5.4646 1.1840 19 9 1.1333 -4.7778 2.3360 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8881 22 1 0.6247 -2.5563 0.8920 23 1 2.8726 -3.6039 0.8910 24 1 2.8713 -3.6047 -0.8890 25 1 1.7332 -5.2802 -2.0986 26 1 0.5116 -7.4166 -2.1007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084931543.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:24 Heat of formation + Delta-G solvation = -127.669032 kcal Electronic energy + Delta-G solvation = -15348.647728 eV Core-core repulsion = 12170.298227 eV Total energy + Delta-G solvation = -3178.349502 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.55821 -48.92574 -48.21444 -38.83556 -34.13721 -32.09675 -30.41302 -28.87951 -25.23671 -23.11047 -22.50361 -20.59650 -18.16962 -17.73053 -17.13973 -16.59304 -16.30214 -15.59129 -15.23035 -14.71246 -14.56744 -14.43369 -14.30404 -13.99486 -13.11107 -12.70386 -12.21660 -11.93292 -11.80884 -11.58118 -10.99163 -10.98646 -10.60781 -10.01810 -9.75668 -9.20021 -8.78456 -8.42007 -8.40250 -6.05989 -4.09684 0.87390 0.93353 3.28166 3.29879 3.36059 3.39657 3.54729 4.29320 4.40776 4.43021 4.58152 4.77265 5.06027 5.30251 5.56436 5.76832 5.92005 5.97170 6.08063 6.41344 6.49212 6.70759 6.89699 7.56757 7.66744 7.91465 8.30606 8.96658 9.54993 11.05201 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.047166 B = 0.006059 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.506234 B = 4620.186228 C = 4855.841518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.072 4.072 12 C -0.075 4.075 13 C -0.134 4.134 14 C 0.074 3.926 15 F -0.128 7.128 16 C 0.030 3.970 17 F -0.124 7.124 18 C 0.097 3.903 19 F -0.113 7.113 20 H 0.261 0.739 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.151 0.849 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -13.156 -2.011 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.118 4.118 11 C -0.073 4.073 12 C -0.094 4.094 13 C -0.153 4.153 14 C 0.054 3.946 15 F -0.107 7.107 16 C 0.009 3.991 17 F -0.102 7.102 18 C 0.077 3.923 19 F -0.092 7.092 20 H 0.071 0.929 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.168 0.832 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.820 -13.076 -1.909 13.340 hybrid contribution 0.058 0.727 0.511 0.891 sum 1.878 -12.349 -1.398 12.569 Atomic orbital electron populations 1.69972 1.06104 1.26682 1.50425 1.25020 0.94848 0.99342 0.95132 0.86511 0.80086 0.83634 0.77632 1.19666 1.20969 1.20967 1.21211 0.93112 0.90673 1.51148 0.92356 1.19120 0.93627 0.90374 0.97847 1.20907 0.98601 0.89671 1.02610 1.20552 0.97856 0.98375 0.90545 1.20955 0.97350 0.92850 0.98198 1.21091 0.99813 0.97741 0.96638 1.17278 0.99808 0.84410 0.93118 1.91513 1.78006 1.44047 1.97133 1.17606 1.03833 0.95208 0.82426 1.91518 1.85131 1.87312 1.46248 1.17293 1.01176 0.90023 0.83824 1.91568 1.93329 1.78056 1.46203 0.92917 0.96142 0.96143 0.91146 0.90844 0.83170 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 15 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 9 C 0.03 0.68 4.95 -27.88 -0.14 0.54 15 10 C -0.08 -1.55 5.01 -27.89 -0.14 -1.69 15 11 C -0.07 -1.20 5.14 -104.56 -0.54 -1.74 15 12 C -0.08 -0.99 9.66 -39.59 -0.38 -1.37 15 13 C -0.13 -1.60 10.02 -39.52 -0.40 -1.99 15 14 C 0.07 1.05 7.31 -39.38 -0.29 0.76 15 15 F -0.13 -1.80 17.18 2.25 0.04 -1.76 15 16 C 0.03 0.49 7.31 -39.31 -0.29 0.20 15 17 F -0.12 -2.08 17.10 2.25 0.04 -2.04 15 18 C 0.10 1.70 7.25 -39.38 -0.29 1.42 15 19 F -0.11 -2.20 16.57 2.25 0.04 -2.16 15 20 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.07 1.36 7.94 -51.92 -0.41 0.95 15 24 H 0.07 1.27 8.00 -51.93 -0.42 0.85 15 25 H 0.15 1.61 8.04 -52.49 -0.42 1.19 15 26 H 0.15 1.29 8.06 -52.49 -0.42 0.86 15 LS Contribution 250.58 15.07 3.78 3.78 Total: -1.00 -29.67 250.58 -5.32 -34.98 By element: Atomic # 1 Polarization: -4.22 SS G_CDS: -2.06 Total: -6.28 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.87 Total: -16.97 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.11 Total: -5.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.67 -5.32 -34.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084931543.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.684 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds