Wall clock time and date at job start Sun Mar 29 2020 22:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46658 * 2 1 4 4 C 1.52999 * 109.47154 * 240.00419 * 2 1 3 5 5 O 1.42898 * 109.47211 * 64.99853 * 4 2 1 6 6 C 1.52997 * 109.47128 * 120.00012 * 2 1 3 7 7 S 1.81396 * 109.47199 * 294.62682 * 6 2 1 8 8 C 1.81402 * 103.00022 * 184.13119 * 7 6 2 9 9 C 1.53001 * 109.47107 * 175.87231 * 8 7 6 10 10 C 1.50700 * 115.55480 * 55.81440 * 9 8 7 11 11 H 1.08000 * 119.99933 * 269.64414 * 10 9 8 12 12 C 1.37871 * 119.99945 * 89.63759 * 10 9 8 13 13 N 1.31520 * 120.00040 * 176.60680 * 12 10 9 14 14 Si 1.86806 * 120.00078 * 356.60328 * 12 10 9 15 15 H 1.48498 * 109.46815 * 93.96499 * 14 12 10 16 16 H 1.48499 * 109.47026 * 213.96119 * 14 12 10 17 17 H 1.48497 * 109.47143 * 333.96547 * 14 12 10 18 18 C 1.53006 * 117.49434 * 270.14147 * 9 8 7 19 19 C 1.53007 * 117.49564 * 201.48554 * 9 8 7 20 20 H 1.08999 * 109.46914 * 65.69649 * 1 2 3 21 21 H 1.09002 * 109.47124 * 185.69319 * 1 2 3 22 22 H 1.09000 * 109.47113 * 305.69315 * 1 2 3 23 23 H 1.08998 * 109.47206 * 185.00232 * 4 2 1 24 24 H 1.09001 * 109.46722 * 304.99553 * 4 2 1 25 25 H 0.96702 * 113.99879 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.47033 * 174.62934 * 6 2 1 27 27 H 1.08998 * 109.47233 * 54.62812 * 6 2 1 28 28 H 1.08999 * 109.47235 * 295.87070 * 8 7 6 29 29 H 1.09001 * 109.47356 * 55.87078 * 8 7 6 30 30 H 0.96996 * 119.99590 * 180.02562 * 13 12 10 31 31 H 1.08995 * 117.50279 * 0.02562 * 18 9 8 32 32 H 1.08997 * 117.49363 * 145.02545 * 18 9 8 33 33 H 1.09004 * 117.49674 * 214.97613 * 19 9 8 34 34 H 1.08997 * 117.50069 * 359.97399 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6620 0.0169 -2.4130 6 6 2.0400 -0.7212 1.2492 7 16 1.5697 0.2213 2.7260 8 6 2.3579 -0.7068 4.0706 9 6 2.1377 0.0277 5.3946 10 6 0.7007 0.3081 5.7513 11 1 0.2366 1.2314 5.4372 12 6 -0.0217 -0.6140 6.4785 13 7 -1.2543 -0.3410 6.8471 14 14 0.7503 -2.2513 6.9401 15 1 1.3521 -2.1505 8.2939 16 1 -0.2930 -3.3080 6.9396 17 1 1.8053 -2.5967 5.9538 18 6 3.1840 1.0640 5.8100 19 6 3.1035 -0.2784 6.5413 20 1 -0.3633 0.4230 -0.9366 21 1 -0.3633 -1.0226 0.1019 22 1 -0.3633 0.5996 0.8346 23 1 3.1263 -0.7994 -1.2056 24 1 1.6054 -1.7197 -1.2952 25 1 1.9526 -0.3831 -3.2441 26 1 3.1258 -0.8053 1.2024 27 1 1.6003 -1.7174 1.2986 28 1 1.9193 -1.7028 4.1304 29 1 3.4270 -0.7916 3.8756 30 1 -1.7623 -0.9896 7.3590 31 1 4.0288 1.2229 5.1399 32 1 2.8328 1.9484 6.3416 33 1 2.6994 -0.2765 7.5537 34 1 3.8953 -1.0032 6.3525 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085138437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:29 Heat of formation + Delta-G solvation = -41.236397 kcal Electronic energy + Delta-G solvation = -14079.557476 eV Core-core repulsion = 11718.089761 eV Total energy + Delta-G solvation = -2361.467715 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.63258 -36.95426 -34.37376 -32.04607 -28.17492 -26.97054 -26.03271 -25.25445 -21.64613 -20.31816 -19.00477 -17.53779 -16.39035 -15.78370 -15.19062 -14.89029 -14.49057 -13.88636 -13.81055 -13.08209 -12.92540 -12.91003 -12.56606 -12.21650 -11.73561 -11.16384 -11.10376 -10.95186 -10.79235 -10.59963 -10.40517 -10.14988 -10.06903 -9.63782 -9.26468 -9.02036 -8.55896 -8.34895 -6.82506 -6.06685 -4.08464 2.26190 3.28462 3.36617 3.38100 3.44985 4.16654 4.43766 4.84227 4.95667 5.03314 5.11344 5.20411 5.36434 5.43198 5.64498 5.67736 5.85554 5.90717 5.92655 6.07447 6.14808 6.20895 6.36359 6.38902 6.46424 6.56467 6.71722 7.03152 7.12319 7.48187 7.74386 8.53493 8.98988 9.56128 11.05400 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.006701 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.417651 B = 4177.470482 C = 4451.857067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 H 0.084 0.916 4 C 0.084 3.916 5 O -0.571 6.571 6 C -0.107 4.107 7 S -0.203 6.203 8 C -0.048 4.048 9 C 0.014 3.986 10 C -0.476 4.476 11 H 0.082 0.918 12 C 0.080 3.920 13 N -0.896 5.896 14 Si 0.877 3.123 15 H -0.280 1.280 16 H -0.294 1.294 17 H -0.261 1.261 18 C -0.174 4.174 19 C -0.196 4.196 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.376 0.624 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.264 0.736 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.189 -3.137 -12.818 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 H 0.102 0.898 4 C 0.005 3.995 5 O -0.376 6.376 6 C -0.256 4.256 7 S 0.025 5.975 8 C -0.196 4.196 9 C 0.012 3.988 10 C -0.514 4.514 11 H 0.100 0.900 12 C -0.123 4.123 13 N -0.533 5.533 14 Si 0.706 3.294 15 H -0.206 1.206 16 H -0.221 1.221 17 H -0.185 1.185 18 C -0.212 4.212 19 C -0.235 4.235 20 H 0.077 0.923 21 H 0.071 0.929 22 H 0.090 0.910 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.222 0.778 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.123 -1.904 -12.214 14.267 hybrid contribution 1.446 -2.634 -0.041 3.005 sum 8.569 -4.538 -12.255 15.627 Atomic orbital electron populations 1.21807 0.93708 1.02229 1.02426 1.20788 0.97566 1.00197 0.90488 0.89753 1.22235 0.97686 0.94135 0.85479 1.86492 1.81570 1.53282 1.16226 1.23413 1.02684 1.02217 0.97255 1.87194 1.71870 1.40422 0.97993 1.23257 0.98917 1.00924 0.96513 1.19038 0.93425 0.97556 0.88786 1.20186 0.91649 1.05872 1.33703 0.90012 1.24941 0.94553 0.97823 0.94949 1.69895 1.09886 1.35613 1.37884 0.86891 0.79031 0.84192 0.79328 1.20595 1.22094 1.18531 1.22854 1.01381 0.93195 1.03724 1.23020 1.02902 0.99169 0.98417 0.92276 0.92944 0.91035 0.93836 0.93623 0.77768 0.91173 0.90699 0.90886 0.92854 0.92641 0.90861 0.89328 0.89200 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.89 37.16 0.33 -1.74 16 2 C -0.07 -0.97 2.62 -90.62 -0.24 -1.20 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.08 0.91 6.43 37.16 0.24 1.15 16 5 O -0.57 -6.18 13.10 -35.23 -0.46 -6.64 16 6 C -0.11 -1.58 5.38 37.16 0.20 -1.38 16 7 S -0.20 -4.01 20.06 -107.50 -2.16 -6.17 16 8 C -0.05 -0.99 5.63 37.16 0.21 -0.78 16 9 C 0.01 0.32 0.90 -155.65 -0.14 0.18 16 10 C -0.48 -13.22 8.75 -34.44 -0.30 -13.52 16 11 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 12 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 13 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 14 Si 0.88 21.54 24.90 -169.99 -4.23 17.31 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.26 -6.02 5.58 56.52 0.32 -5.70 16 18 C -0.17 -3.58 9.93 -26.69 -0.27 -3.85 16 19 C -0.20 -4.14 7.53 -26.69 -0.20 -4.34 16 20 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 1.16 7.36 -51.93 -0.38 0.78 16 23 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.38 2.19 9.12 45.56 0.42 2.60 16 26 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 28 H 0.07 1.57 6.61 -51.92 -0.34 1.23 16 29 H 0.05 0.97 8.10 -51.92 -0.42 0.55 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.09 2.00 7.11 -51.93 -0.37 1.63 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 288.94 15.07 4.35 4.35 Total: -1.00 -30.86 288.94 -6.93 -37.80 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.95 Total: 3.13 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -0.26 Total: -23.31 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.77 Total: -26.47 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.46 Total: -6.64 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.23 Total: 17.31 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.16 Total: -6.17 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.86 -6.93 -37.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085138437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.441 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds