Wall clock time and date at job start Sun Mar 29 2020 22:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46658 * 2 1 4 4 C 1.52999 * 109.47154 * 240.00419 * 2 1 3 5 5 O 1.42898 * 109.47211 * 64.99853 * 4 2 1 6 6 C 1.52997 * 109.47128 * 120.00012 * 2 1 3 7 7 S 1.81396 * 109.47199 * 294.62682 * 6 2 1 8 8 C 1.81402 * 103.00022 * 184.13119 * 7 6 2 9 9 C 1.53001 * 109.47107 * 175.87231 * 8 7 6 10 10 C 1.50700 * 115.55480 * 55.81440 * 9 8 7 11 11 H 1.08000 * 119.99933 * 269.64414 * 10 9 8 12 12 C 1.37871 * 119.99945 * 89.63759 * 10 9 8 13 13 N 1.31520 * 120.00040 * 176.60680 * 12 10 9 14 14 Si 1.86806 * 120.00078 * 356.60328 * 12 10 9 15 15 H 1.48498 * 109.46815 * 93.96499 * 14 12 10 16 16 H 1.48499 * 109.47026 * 213.96119 * 14 12 10 17 17 H 1.48497 * 109.47143 * 333.96547 * 14 12 10 18 18 C 1.53006 * 117.49434 * 270.14147 * 9 8 7 19 19 C 1.53007 * 117.49564 * 201.48554 * 9 8 7 20 20 H 1.08999 * 109.46914 * 65.69649 * 1 2 3 21 21 H 1.09002 * 109.47124 * 185.69319 * 1 2 3 22 22 H 1.09000 * 109.47113 * 305.69315 * 1 2 3 23 23 H 1.08998 * 109.47206 * 185.00232 * 4 2 1 24 24 H 1.09001 * 109.46722 * 304.99553 * 4 2 1 25 25 H 0.96702 * 113.99879 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.47033 * 174.62934 * 6 2 1 27 27 H 1.08998 * 109.47233 * 54.62812 * 6 2 1 28 28 H 1.08999 * 109.47235 * 295.87070 * 8 7 6 29 29 H 1.09001 * 109.47356 * 55.87078 * 8 7 6 30 30 H 0.96996 * 119.99590 * 180.02562 * 13 12 10 31 31 H 1.08995 * 117.50279 * 0.02562 * 18 9 8 32 32 H 1.08997 * 117.49363 * 145.02545 * 18 9 8 33 33 H 1.09004 * 117.49674 * 214.97613 * 19 9 8 34 34 H 1.08997 * 117.50069 * 359.97399 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6620 0.0169 -2.4130 6 6 2.0400 -0.7212 1.2492 7 16 1.5697 0.2213 2.7260 8 6 2.3579 -0.7068 4.0706 9 6 2.1377 0.0277 5.3946 10 6 0.7007 0.3081 5.7513 11 1 0.2366 1.2314 5.4372 12 6 -0.0217 -0.6140 6.4785 13 7 -1.2543 -0.3410 6.8471 14 14 0.7503 -2.2513 6.9401 15 1 1.3521 -2.1505 8.2939 16 1 -0.2930 -3.3080 6.9396 17 1 1.8053 -2.5967 5.9538 18 6 3.1840 1.0640 5.8100 19 6 3.1035 -0.2784 6.5413 20 1 -0.3633 0.4230 -0.9366 21 1 -0.3633 -1.0226 0.1019 22 1 -0.3633 0.5996 0.8346 23 1 3.1263 -0.7994 -1.2056 24 1 1.6054 -1.7197 -1.2952 25 1 1.9526 -0.3831 -3.2441 26 1 3.1258 -0.8053 1.2024 27 1 1.6003 -1.7174 1.2986 28 1 1.9193 -1.7028 4.1304 29 1 3.4270 -0.7916 3.8756 30 1 -1.7623 -0.9896 7.3590 31 1 4.0288 1.2229 5.1399 32 1 2.8328 1.9484 6.3416 33 1 2.6994 -0.2765 7.5537 34 1 3.8953 -1.0032 6.3525 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085138437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:28 Heat of formation + Delta-G solvation = -62.576751 kcal Electronic energy + Delta-G solvation = -14080.482863 eV Core-core repulsion = 11718.089761 eV Total energy + Delta-G solvation = -2362.393102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.72462 -38.49632 -35.36373 -34.19997 -29.76596 -28.27532 -27.38259 -26.85201 -23.30842 -21.47774 -20.78215 -18.55135 -18.19003 -16.99834 -16.85718 -16.32021 -15.75088 -15.48193 -15.03502 -14.77883 -14.54970 -14.31750 -14.02934 -13.36538 -13.31759 -12.86397 -12.61957 -12.29434 -12.16076 -12.08697 -11.90509 -11.69171 -11.59853 -10.92947 -10.85401 -10.70243 -10.59822 -10.09464 -8.37519 -8.24552 -6.30775 0.86317 1.35768 1.37675 1.49792 1.98131 2.39109 3.09098 3.25176 3.36066 3.81484 3.98388 4.05124 4.20216 4.27478 4.40059 4.43215 4.48649 4.56009 4.59502 4.71414 4.73786 4.85049 4.88842 5.05480 5.07324 5.27209 5.32336 5.38398 5.47762 5.72092 6.34434 6.75994 6.95672 7.37091 8.91567 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.006701 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.417651 B = 4177.470482 C = 4451.857067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 H 0.070 0.930 4 C 0.091 3.909 5 O -0.591 6.591 6 C -0.083 4.083 7 S -0.276 6.276 8 C -0.035 4.035 9 C -0.017 4.017 10 C -0.470 4.470 11 H 0.027 0.973 12 C 0.019 3.981 13 N -0.952 5.952 14 Si 0.939 3.061 15 H -0.270 1.270 16 H -0.300 1.300 17 H -0.229 1.229 18 C -0.161 4.161 19 C -0.184 4.184 20 H 0.062 0.938 21 H 0.057 0.943 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.398 0.602 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.264 0.736 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.230 -5.174 -14.230 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 H 0.088 0.912 4 C 0.012 3.988 5 O -0.400 6.400 6 C -0.232 4.232 7 S -0.047 6.047 8 C -0.183 4.183 9 C -0.019 4.019 10 C -0.508 4.508 11 H 0.045 0.955 12 C -0.178 4.178 13 N -0.592 5.592 14 Si 0.764 3.236 15 H -0.196 1.196 16 H -0.227 1.227 17 H -0.152 1.152 18 C -0.198 4.198 19 C -0.223 4.223 20 H 0.081 0.919 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.248 0.752 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.200 -3.934 -13.647 17.486 hybrid contribution 0.450 -1.856 0.291 1.931 sum 10.650 -5.790 -13.357 18.037 Atomic orbital electron populations 1.21753 0.94838 1.01921 1.01349 1.20778 0.96627 0.99901 0.91796 0.91176 1.22109 0.98765 0.93890 0.84059 1.86431 1.82024 1.54097 1.17403 1.23386 1.04195 1.01344 0.94233 1.87518 1.73186 1.42538 1.01490 1.23054 1.00776 0.99576 0.94877 1.18967 0.91154 1.00620 0.91136 1.20262 0.94360 1.03610 1.32612 0.95521 1.25827 0.94869 1.01943 0.95147 1.70065 1.11986 1.37239 1.39880 0.85887 0.78745 0.78923 0.80039 1.19592 1.22743 1.15210 1.22877 1.01022 0.92468 1.03470 1.23074 1.02439 1.00071 0.96743 0.91858 0.92434 0.93959 0.91821 0.92212 0.75153 0.88650 0.89835 0.91730 0.89424 0.92759 0.87626 0.90804 0.90695 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.89 71.98 0.64 -3.35 16 2 C -0.07 -1.81 2.62 -10.79 -0.03 -1.84 16 3 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 4 C 0.09 1.65 6.43 71.98 0.46 2.11 16 5 O -0.59 -11.11 13.10 -148.98 -1.95 -13.06 16 6 C -0.08 -2.24 5.38 71.98 0.39 -1.85 16 7 S -0.28 -10.72 20.06 -56.49 -1.13 -11.85 16 8 C -0.03 -1.34 5.63 71.98 0.41 -0.94 16 9 C -0.02 -0.77 0.90 -52.92 -0.05 -0.81 16 10 C -0.47 -26.90 8.75 25.60 0.22 -26.68 16 11 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 12 C 0.02 1.10 5.47 84.65 0.46 1.57 16 13 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 14 Si 0.94 44.01 24.90 68.60 1.71 45.72 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 17 H -0.23 -9.50 5.58 99.48 0.56 -8.94 16 18 C -0.16 -6.27 9.93 30.62 0.30 -5.97 16 19 C -0.18 -7.18 7.53 30.62 0.23 -6.95 16 20 H 0.06 1.70 7.68 -2.39 -0.02 1.68 16 21 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.04 1.42 7.36 -2.39 -0.02 1.40 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.40 3.36 9.12 -74.06 -0.68 2.68 16 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.06 2.58 6.61 -2.39 -0.02 2.56 16 29 H 0.09 2.78 8.10 -2.39 -0.02 2.76 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 32 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.07 3.15 7.11 -2.38 -0.02 3.13 16 34 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -69.94 288.94 2.20 -67.74 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.24 Total: 16.33 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 3.04 Total: -44.71 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.30 Total: -60.17 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.95 Total: -13.06 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.71 Total: 45.72 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.13 Total: -11.85 kcal Total: -69.94 2.20 -67.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085138437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.161 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds