Wall clock time and date at job start Sun Mar 29 2020 21:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 S 1.76204 * 120.00021 * 179.72039 * 7 2 1 10 10 O 1.42097 * 106.40483 * 293.54507 * 9 7 2 11 11 O 1.42106 * 106.39776 * 66.46199 * 9 7 2 12 12 C 1.76195 * 107.22180 * 179.97438 * 9 7 2 13 13 C 1.38258 * 119.99028 * 269.73360 * 12 9 7 14 14 C 1.38228 * 120.05237 * 179.72424 * 13 12 9 15 15 C 1.38216 * 120.02368 * 0.54520 * 14 13 12 16 16 C 1.38437 * 119.97506 * 359.72926 * 15 14 13 17 17 F 1.35105 * 120.02522 * 180.02562 * 16 15 14 18 18 C 1.38183 * 119.98276 * 89.99868 * 12 9 7 19 19 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 20 20 H 1.08003 * 119.97803 * 359.97363 * 13 12 9 21 21 H 1.08003 * 119.98774 * 180.26999 * 14 13 12 22 22 H 1.07998 * 120.01767 * 179.74494 * 15 14 13 23 23 H 1.07993 * 120.01552 * 359.97438 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 16 3.7665 -1.1940 -0.0132 10 8 4.1626 -0.6466 -1.2632 11 8 4.1730 -0.6526 1.2362 12 6 4.2881 -2.8770 -0.0186 13 6 4.5031 -3.5378 1.1766 14 6 4.9068 -4.8598 1.1739 15 6 5.1069 -5.5193 -0.0241 16 6 4.8975 -4.8570 -1.2216 17 9 5.0923 -5.5009 -2.3933 18 6 4.4875 -3.5343 -1.2177 19 1 -0.4850 0.8400 0.0004 20 1 4.3516 -3.0219 2.1133 21 1 5.0702 -5.3762 2.1083 22 1 5.4264 -6.5509 -0.0262 23 1 4.3232 -3.0168 -2.1512 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085347570.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:43 Heat of formation + Delta-G solvation = -96.979715 kcal Electronic energy + Delta-G solvation = -13721.084424 eV Core-core repulsion = 10962.073004 eV Total energy + Delta-G solvation = -2759.011421 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.77432 -38.66887 -35.75019 -34.53626 -33.11152 -31.17113 -30.31113 -26.49091 -23.27600 -22.55469 -19.06908 -17.94175 -17.09056 -16.26286 -16.06957 -15.73578 -15.47748 -14.78383 -14.20870 -13.72686 -13.50909 -13.08486 -12.96405 -12.28583 -12.06893 -11.55914 -11.44924 -11.06808 -10.69881 -10.63053 -10.45608 -9.66661 -9.33294 -9.26043 -8.96578 -8.64854 -6.86946 -5.44284 0.93397 1.29301 1.73386 3.04906 3.14782 3.23865 3.52721 3.90973 4.31386 4.51903 4.64924 4.81794 4.94294 5.25881 5.29930 5.45099 5.65051 5.90915 6.10668 6.20436 6.29174 6.53745 6.95067 7.39904 8.12492 8.60969 10.24629 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.043659 B = 0.009293 C = 0.009029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.186279 B = 3012.181586 C = 3100.309803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.153 3.847 3 Si 0.802 3.198 4 H -0.245 1.245 5 H -0.217 1.217 6 H -0.254 1.254 7 C -0.996 4.996 8 H 0.124 0.876 9 S 2.558 3.442 10 O -0.983 6.983 11 O -0.985 6.985 12 C -0.602 4.602 13 C -0.037 4.037 14 C -0.117 4.117 15 C -0.117 4.117 16 C 0.071 3.929 17 F -0.141 7.141 18 C -0.058 4.058 19 H 0.283 0.717 20 H 0.149 0.851 21 H 0.138 0.862 22 H 0.137 0.863 23 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.234 -7.644 1.008 10.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.168 1.168 5 H -0.139 1.139 6 H -0.178 1.178 7 C -1.130 5.130 8 H 0.142 0.858 9 S 2.743 3.257 10 O -0.980 6.980 11 O -0.982 6.982 12 C -0.686 4.686 13 C -0.055 4.055 14 C -0.136 4.136 15 C -0.136 4.136 16 C 0.051 3.949 17 F -0.119 7.119 18 C -0.077 4.077 19 H 0.094 0.906 20 H 0.167 0.833 21 H 0.156 0.844 22 H 0.155 0.845 23 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.657 -6.945 0.952 10.381 hybrid contribution -0.308 -0.258 -0.228 0.462 sum 7.349 -7.203 0.723 10.316 Atomic orbital electron populations 1.69969 1.06523 1.29298 1.38869 1.24411 0.94819 0.98845 0.88591 0.87848 0.83697 0.84288 0.82027 1.16819 1.13922 1.17754 1.29884 1.13172 1.02548 1.67415 0.85769 1.02112 0.78198 0.71413 0.73948 1.93456 1.85464 1.74927 1.44202 1.93397 1.85271 1.75208 1.44349 1.31052 1.12280 1.27572 0.97651 1.21128 0.92599 0.94162 0.97641 1.21134 1.00088 0.94765 0.97618 1.21311 1.00087 1.00631 0.91538 1.17741 1.04175 0.91598 0.81412 1.91490 1.93061 1.81436 1.45936 1.20998 0.95011 0.92622 0.99116 0.90642 0.83310 0.84394 0.84540 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.01 13.96 55.43 0.77 -22.24 14 2 C 0.15 4.28 5.47 -17.82 -0.10 4.18 14 3 Si 0.80 19.87 26.54 -169.99 -4.51 15.36 14 4 H -0.24 -5.89 7.11 56.52 0.40 -5.49 14 5 H -0.22 -5.44 5.60 56.52 0.32 -5.13 14 6 H -0.25 -5.78 7.11 56.52 0.40 -5.37 14 7 C -1.00 -26.98 10.12 30.60 0.31 -26.67 14 8 H 0.12 3.40 8.06 -52.49 -0.42 2.97 14 9 S 2.56 62.08 3.87 -107.50 -0.42 61.66 14 10 O -0.98 -25.38 15.17 -57.17 -0.87 -26.25 14 11 O -0.99 -24.92 15.97 -57.17 -0.91 -25.83 14 12 C -0.60 -11.98 5.81 -39.59 -0.23 -12.21 14 13 C -0.04 -0.62 9.52 -39.58 -0.38 -1.00 14 14 C -0.12 -1.59 10.04 -39.59 -0.40 -1.99 14 15 C -0.12 -1.58 10.03 -39.52 -0.40 -1.98 14 16 C 0.07 1.14 7.30 -39.42 -0.29 0.85 14 17 F -0.14 -2.19 17.27 2.25 0.04 -2.15 14 18 C -0.06 -1.08 9.50 -39.51 -0.38 -1.45 14 19 H 0.28 7.19 8.31 -40.82 -0.34 6.85 14 20 H 0.15 2.36 7.61 -52.48 -0.40 1.96 14 21 H 0.14 1.34 8.06 -52.48 -0.42 0.91 14 22 H 0.14 1.38 8.06 -52.49 -0.42 0.96 14 23 H 0.15 2.76 7.62 -52.49 -0.40 2.36 14 LS Contribution 228.09 15.07 3.44 3.44 Total: -1.00 -30.65 228.09 -5.60 -36.25 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -1.29 Total: 0.02 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: -1.85 Total: -40.26 kcal Atomic # 7 Polarization: -23.01 SS G_CDS: 0.77 Total: -22.24 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -1.78 Total: -52.08 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.51 Total: 15.36 kcal Atomic # 16 Polarization: 62.08 SS G_CDS: -0.42 Total: 61.66 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.65 -5.60 -36.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085347570.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.729 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds