Wall clock time and date at job start Sun Mar 29 2020 21:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 S 1.76204 * 120.00021 * 179.72039 * 7 2 1 10 10 O 1.42097 * 106.40483 * 293.54507 * 9 7 2 11 11 O 1.42106 * 106.39776 * 66.46199 * 9 7 2 12 12 C 1.76195 * 107.22180 * 179.97438 * 9 7 2 13 13 C 1.38258 * 119.99028 * 269.73360 * 12 9 7 14 14 C 1.38228 * 120.05237 * 179.72424 * 13 12 9 15 15 C 1.38216 * 120.02368 * 0.54520 * 14 13 12 16 16 C 1.38437 * 119.97506 * 359.72926 * 15 14 13 17 17 F 1.35105 * 120.02522 * 180.02562 * 16 15 14 18 18 C 1.38183 * 119.98276 * 89.99868 * 12 9 7 19 19 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 20 20 H 1.08003 * 119.97803 * 359.97363 * 13 12 9 21 21 H 1.08003 * 119.98774 * 180.26999 * 14 13 12 22 22 H 1.07998 * 120.01767 * 179.74494 * 15 14 13 23 23 H 1.07993 * 120.01552 * 359.97438 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 16 3.7665 -1.1940 -0.0132 10 8 4.1626 -0.6466 -1.2632 11 8 4.1730 -0.6526 1.2362 12 6 4.2881 -2.8770 -0.0186 13 6 4.5031 -3.5378 1.1766 14 6 4.9068 -4.8598 1.1739 15 6 5.1069 -5.5193 -0.0241 16 6 4.8975 -4.8570 -1.2216 17 9 5.0923 -5.5009 -2.3933 18 6 4.4875 -3.5343 -1.2177 19 1 -0.4850 0.8400 0.0004 20 1 4.3516 -3.0219 2.1133 21 1 5.0702 -5.3762 2.1083 22 1 5.4264 -6.5509 -0.0262 23 1 4.3232 -3.0168 -2.1512 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085347570.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:43 Heat of formation + Delta-G solvation = -119.300437 kcal Electronic energy + Delta-G solvation = -13722.052324 eV Core-core repulsion = 10962.073004 eV Total energy + Delta-G solvation = -2759.979320 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.020 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.00333 -39.93462 -37.71627 -36.51416 -35.21747 -32.44932 -31.58238 -28.59553 -24.61415 -23.81730 -20.89212 -19.65065 -18.96022 -17.66332 -17.50598 -17.24997 -16.72249 -16.47823 -16.04253 -15.50756 -14.99549 -14.91031 -14.36755 -13.63720 -13.57051 -13.40410 -13.04562 -12.89944 -12.64722 -12.57703 -12.16222 -11.47335 -11.32251 -11.11887 -10.46142 -9.92246 -8.98078 -7.57445 -0.40005 -0.09056 0.03667 1.07491 1.16753 1.24580 1.90641 2.27264 2.40274 2.81757 3.09246 3.34277 3.59114 3.86434 4.04048 4.07240 4.33208 4.54877 4.85863 4.93576 5.07346 5.11935 5.34494 5.73983 5.97251 6.49323 8.19134 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.043659 B = 0.009293 C = 0.009029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.186279 B = 3012.181586 C = 3100.309803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.109 3.891 3 Si 0.825 3.175 4 H -0.234 1.234 5 H -0.226 1.226 6 H -0.220 1.220 7 C -1.020 5.020 8 H 0.107 0.893 9 S 2.572 3.428 10 O -1.009 7.009 11 O -1.002 7.002 12 C -0.622 4.622 13 C -0.050 4.050 14 C -0.098 4.098 15 C -0.094 4.094 16 C 0.065 3.935 17 F -0.138 7.138 18 C -0.082 4.082 19 H 0.294 0.706 20 H 0.155 0.845 21 H 0.190 0.810 22 H 0.184 0.816 23 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.585 -9.438 1.922 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.108 4.108 3 Si 0.641 3.359 4 H -0.157 1.157 5 H -0.148 1.148 6 H -0.142 1.142 7 C -1.152 5.152 8 H 0.125 0.875 9 S 2.761 3.239 10 O -1.006 7.006 11 O -0.999 6.999 12 C -0.711 4.711 13 C -0.069 4.069 14 C -0.117 4.117 15 C -0.112 4.112 16 C 0.045 3.955 17 F -0.117 7.117 18 C -0.102 4.102 19 H 0.104 0.896 20 H 0.173 0.827 21 H 0.207 0.793 22 H 0.202 0.798 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.956 -8.670 1.861 12.603 hybrid contribution -0.683 0.083 -0.504 0.853 sum 8.273 -8.587 1.357 12.001 Atomic orbital electron populations 1.69996 1.07441 1.30743 1.39806 1.25165 0.95651 1.01509 0.88462 0.87480 0.82983 0.82447 0.82969 1.15697 1.14848 1.14194 1.30409 1.15843 1.01958 1.67031 0.87482 1.01214 0.76427 0.73225 0.73049 1.93412 1.85079 1.77109 1.44998 1.93360 1.84766 1.77115 1.44625 1.30233 1.15984 1.25112 0.99750 1.21447 0.92793 0.96038 0.96604 1.21670 0.97220 0.92943 0.99831 1.21881 0.96937 1.02392 0.89978 1.17854 1.04204 0.90770 0.82635 1.91499 1.93016 1.81072 1.46110 1.21002 0.96633 0.94264 0.98318 0.89575 0.82716 0.79278 0.79829 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.72 13.96 21.45 0.30 -48.42 14 2 C 0.11 6.21 5.47 84.65 0.46 6.67 14 3 Si 0.82 40.36 26.54 68.60 1.82 42.18 14 4 H -0.23 -10.96 7.11 99.48 0.71 -10.25 14 5 H -0.23 -11.36 5.60 99.48 0.56 -10.80 14 6 H -0.22 -9.48 7.11 99.48 0.71 -8.78 14 7 C -1.02 -57.12 10.12 67.73 0.69 -56.44 14 8 H 0.11 6.15 8.06 -2.91 -0.02 6.12 14 9 S 2.57 127.41 3.87 -56.49 -0.22 127.19 14 10 O -1.01 -53.53 15.17 -128.00 -1.94 -55.47 14 11 O -1.00 -51.16 15.97 -128.00 -2.04 -53.20 14 12 C -0.62 -24.58 5.81 22.26 0.13 -24.45 14 13 C -0.05 -1.59 9.52 22.27 0.21 -1.37 14 14 C -0.10 -2.17 10.04 22.26 0.22 -1.95 14 15 C -0.09 -2.06 10.03 22.31 0.22 -1.83 14 16 C 0.07 1.94 7.30 22.38 0.16 2.11 14 17 F -0.14 -3.99 17.27 44.97 0.78 -3.22 14 18 C -0.08 -3.03 9.50 22.32 0.21 -2.82 14 19 H 0.29 15.07 8.31 -92.71 -0.77 14.30 14 20 H 0.16 4.64 7.61 -2.91 -0.02 4.62 14 21 H 0.19 2.31 8.06 -2.91 -0.02 2.28 14 22 H 0.18 2.38 8.06 -2.91 -0.02 2.36 14 23 H 0.14 5.35 7.62 -2.91 -0.02 5.33 14 Total: -1.00 -67.95 228.09 2.09 -65.86 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.09 Total: 5.17 kcal Atomic # 6 Polarization: -82.39 SS G_CDS: 2.31 Total: -80.08 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.30 Total: -48.42 kcal Atomic # 8 Polarization: -104.69 SS G_CDS: -3.99 Total: -108.68 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.82 Total: 42.18 kcal Atomic # 16 Polarization: 127.41 SS G_CDS: -0.22 Total: 127.19 kcal Total: -67.95 2.09 -65.86 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085347570.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.443 kcal (2) G-P(sol) polarization free energy of solvation -67.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds