Wall clock time and date at job start Sun Mar 29 2020 22:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48494 * 109.47204 * 149.99724 * 3 2 1 7 7 C 1.38942 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00356 * 0.27721 * 7 2 1 9 9 N 1.37105 * 119.99884 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.48539 * 111.00039 * 52.60180 * 13 12 10 15 15 C 1.54936 * 103.22836 * 159.72393 * 14 13 12 16 16 H 1.08998 * 110.72647 * 80.94262 * 15 14 13 17 17 O 1.42898 * 110.72661 * 204.23059 * 15 14 13 18 18 C 1.54596 * 102.92094 * 322.58693 * 15 14 13 19 19 H 1.09000 * 110.31245 * 140.87142 * 18 15 14 20 20 O 1.42898 * 110.39655 * 262.99845 * 18 15 14 21 21 C 1.47901 * 111.00404 * 170.00181 * 13 12 10 22 22 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 23 23 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 24 24 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 25 25 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 26 26 H 1.08998 * 110.66616 * 278.15936 * 14 13 12 27 27 H 1.09004 * 110.66476 * 41.28742 * 14 13 12 28 28 H 0.96699 * 113.99775 * 293.50499 * 17 15 14 29 29 H 0.96693 * 114.00488 * 177.21518 * 20 18 15 30 30 H 1.09005 * 109.91300 * 333.50518 * 21 13 12 31 31 H 1.08996 * 109.91944 * 94.60086 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0055 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3704 -0.0011 13 7 6.0505 -3.7554 -0.0017 14 6 5.4339 -4.5375 -1.1037 15 6 6.4089 -5.7284 -1.2818 16 1 6.2167 -6.4993 -0.5356 17 8 6.3143 -6.2662 -2.6024 18 6 7.7931 -5.0791 -1.0535 19 1 8.4378 -5.7515 -0.4875 20 8 8.3999 -4.7472 -2.3039 21 6 7.5092 -3.8017 -0.2414 22 1 -0.4850 0.8401 0.0004 23 1 3.8649 -0.3632 -0.0007 24 1 5.9241 -1.8566 -0.8910 25 1 5.9241 -1.8566 0.8889 26 1 4.4434 -4.8908 -0.8172 27 1 5.3825 -3.9427 -2.0157 28 1 5.4647 -6.6852 -2.7965 29 1 9.2521 -4.2979 -2.2207 30 1 7.8203 -2.9244 -0.8086 31 1 8.0409 -3.8367 0.7094 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086331756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:52 Heat of formation + Delta-G solvation = -109.740806 kcal Electronic energy + Delta-G solvation = -16413.477519 eV Core-core repulsion = 13502.746016 eV Total energy + Delta-G solvation = -2910.731504 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73492 -38.15316 -35.85265 -35.53942 -33.95763 -31.75367 -30.37667 -28.00626 -26.52961 -24.03999 -21.40690 -20.74926 -19.45860 -18.39350 -17.93621 -16.59916 -15.96732 -15.67295 -15.11942 -14.89267 -14.49939 -14.08064 -13.63764 -13.17001 -13.06154 -12.61931 -12.41934 -12.36990 -12.00337 -11.53124 -11.44187 -11.14917 -10.64607 -10.53705 -10.24711 -10.00951 -9.78149 -9.56460 -8.58056 -8.24846 -8.09574 -6.34968 -3.86652 3.00160 3.04475 3.12809 3.66751 3.76236 4.06886 4.16561 4.27835 4.61751 4.67381 4.85676 5.15738 5.18146 5.30491 5.51109 5.55341 5.66574 5.71850 5.81481 5.88655 6.12020 6.49378 6.97971 7.05169 7.50875 7.53752 7.78574 8.09999 8.55050 8.90507 9.37645 9.77073 10.77911 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.047202 B = 0.006078 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.046853 B = 4606.019795 C = 4898.443188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.043 3.957 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.587 5.587 10 C 0.451 3.549 11 O -0.564 6.564 12 C 0.034 3.966 13 N -0.489 5.489 14 C 0.007 3.993 15 C 0.102 3.898 16 H 0.080 0.920 17 O -0.548 6.548 18 C 0.100 3.900 19 H 0.069 0.931 20 O -0.544 6.544 21 C -0.001 4.001 22 H 0.274 0.726 23 H 0.371 0.629 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.049 0.951 28 H 0.377 0.623 29 H 0.370 0.630 30 H 0.056 0.944 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.983 -4.732 -1.145 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.226 5.226 10 C 0.237 3.763 11 O -0.447 6.447 12 C -0.098 4.098 13 N -0.215 5.215 14 C -0.120 4.120 15 C 0.042 3.958 16 H 0.098 0.902 17 O -0.352 6.352 18 C 0.041 3.959 19 H 0.086 0.914 20 O -0.348 6.348 21 C -0.129 4.129 22 H 0.085 0.915 23 H 0.204 0.796 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.140 0.860 27 H 0.068 0.932 28 H 0.224 0.776 29 H 0.216 0.784 30 H 0.074 0.926 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.288 -5.581 -0.915 16.300 hybrid contribution 0.727 2.060 -0.342 2.211 sum 16.015 -3.521 -1.258 16.445 Atomic orbital electron populations 1.69621 1.05645 1.27577 1.49070 1.25040 0.95501 0.98009 0.97519 0.86675 0.79820 0.84022 0.78916 1.19611 1.20076 1.19463 1.19432 0.79134 0.96681 1.48227 0.86206 1.42190 1.07594 1.06094 1.66690 1.19569 0.88043 0.84596 0.84140 1.90466 1.69472 1.30556 1.54178 1.22157 0.95539 0.90283 1.01819 1.64570 1.02318 1.11064 1.43556 1.24210 1.00704 0.94349 0.92752 1.22898 0.93179 0.94698 0.85036 0.90250 1.86582 1.39910 1.77993 1.30684 1.22719 0.93817 0.94482 0.84927 0.91355 1.86719 1.38482 1.80752 1.28864 1.23800 0.91370 0.97618 1.00139 0.91546 0.79638 0.93027 0.88890 0.86009 0.93229 0.77638 0.78354 0.92619 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 9 N -0.59 -13.96 5.09 -10.96 -0.06 -14.02 16 10 C 0.45 10.21 7.49 -10.99 -0.08 10.13 16 11 O -0.56 -14.66 13.10 5.55 0.07 -14.59 16 12 C 0.03 0.58 5.52 -4.98 -0.03 0.55 16 13 N -0.49 -8.01 5.26 -231.89 -1.22 -9.23 16 14 C 0.01 0.13 5.02 -1.89 -0.01 0.12 16 15 C 0.10 1.44 4.39 -24.87 -0.11 1.33 16 16 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 17 O -0.55 -7.88 12.71 -55.36 -0.70 -8.58 16 18 C 0.10 1.24 4.31 -25.37 -0.11 1.13 16 19 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 20 O -0.54 -7.02 12.57 -55.36 -0.70 -7.72 16 21 C 0.00 -0.01 6.51 -2.75 -0.02 -0.02 16 22 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 23 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 24 H 0.05 0.81 7.81 -51.93 -0.41 0.40 16 25 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.12 2.40 5.97 -51.93 -0.31 2.09 16 27 H 0.05 0.92 8.02 -51.93 -0.42 0.51 16 28 H 0.38 3.90 9.12 45.56 0.42 4.32 16 29 H 0.37 2.88 9.11 45.56 0.41 3.29 16 30 H 0.06 0.65 7.39 -51.93 -0.38 0.27 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 261.48 15.07 3.94 3.94 Total: -1.00 -34.42 261.48 -5.37 -39.79 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -2.17 Total: 15.06 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.60 Total: 5.54 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.50 Total: -48.03 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.33 Total: -30.88 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.42 -5.37 -39.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086331756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.949 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds