Wall clock time and date at job start Sun Mar 29 2020 22:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48494 * 109.47204 * 149.99724 * 3 2 1 7 7 C 1.38942 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00356 * 0.27721 * 7 2 1 9 9 N 1.37105 * 119.99884 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.48539 * 111.00039 * 52.60180 * 13 12 10 15 15 C 1.54936 * 103.22836 * 159.72393 * 14 13 12 16 16 H 1.08998 * 110.72647 * 80.94262 * 15 14 13 17 17 O 1.42898 * 110.72661 * 204.23059 * 15 14 13 18 18 C 1.54596 * 102.92094 * 322.58693 * 15 14 13 19 19 H 1.09000 * 110.31245 * 140.87142 * 18 15 14 20 20 O 1.42898 * 110.39655 * 262.99845 * 18 15 14 21 21 C 1.47901 * 111.00404 * 170.00181 * 13 12 10 22 22 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 23 23 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 24 24 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 25 25 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 26 26 H 1.08998 * 110.66616 * 278.15936 * 14 13 12 27 27 H 1.09004 * 110.66476 * 41.28742 * 14 13 12 28 28 H 0.96699 * 113.99775 * 293.50499 * 17 15 14 29 29 H 0.96693 * 114.00488 * 177.21518 * 20 18 15 30 30 H 1.09005 * 109.91300 * 333.50518 * 21 13 12 31 31 H 1.08996 * 109.91944 * 94.60086 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0055 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3704 -0.0011 13 7 6.0505 -3.7554 -0.0017 14 6 5.4339 -4.5375 -1.1037 15 6 6.4089 -5.7284 -1.2818 16 1 6.2167 -6.4993 -0.5356 17 8 6.3143 -6.2662 -2.6024 18 6 7.7931 -5.0791 -1.0535 19 1 8.4378 -5.7515 -0.4875 20 8 8.3999 -4.7472 -2.3039 21 6 7.5092 -3.8017 -0.2414 22 1 -0.4850 0.8401 0.0004 23 1 3.8649 -0.3632 -0.0007 24 1 5.9241 -1.8566 -0.8910 25 1 5.9241 -1.8566 0.8889 26 1 4.4434 -4.8908 -0.8172 27 1 5.3825 -3.9427 -2.0157 28 1 5.4647 -6.6852 -2.7965 29 1 9.2521 -4.2979 -2.2207 30 1 7.8203 -2.9244 -0.8086 31 1 8.0409 -3.8367 0.7094 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086331756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:52 Heat of formation + Delta-G solvation = -143.166839 kcal Electronic energy + Delta-G solvation = -16414.926981 eV Core-core repulsion = 13502.746016 eV Total energy + Delta-G solvation = -2912.180965 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.05719 -39.73574 -36.90228 -36.76926 -35.88632 -33.80811 -31.64226 -29.12463 -28.10470 -25.77543 -22.67997 -21.76685 -21.35291 -20.23074 -19.05958 -17.89755 -17.29131 -17.00979 -16.83151 -16.33176 -15.76669 -15.48765 -15.03820 -14.81829 -14.51356 -14.22436 -13.93739 -13.55332 -13.46419 -13.09074 -12.65369 -12.53207 -12.42881 -11.99773 -11.64771 -11.49349 -11.22765 -10.82241 -10.33180 -10.24440 -9.45114 -8.43756 -6.04895 1.28571 1.33485 1.42810 1.89465 2.20877 2.53998 2.94496 3.12205 3.29944 3.44259 3.60767 3.73371 4.12035 4.18586 4.25268 4.30912 4.44929 4.53871 4.69244 4.86909 4.92117 5.14866 5.49628 5.71152 5.84444 5.97529 6.55819 6.73487 6.84831 6.97102 7.35126 7.91364 8.73654 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.047202 B = 0.006078 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.046853 B = 4606.019795 C = 4898.443188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.963 3.037 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.230 1.230 7 C -0.329 4.329 8 H 0.057 0.943 9 N -0.589 5.589 10 C 0.447 3.553 11 O -0.605 6.605 12 C 0.044 3.956 13 N -0.505 5.505 14 C 0.012 3.988 15 C 0.101 3.899 16 H 0.092 0.908 17 O -0.562 6.562 18 C 0.103 3.897 19 H 0.098 0.902 20 O -0.567 6.567 21 C 0.003 3.997 22 H 0.280 0.720 23 H 0.389 0.611 24 H 0.075 0.925 25 H 0.127 0.873 26 H 0.083 0.917 27 H 0.026 0.974 28 H 0.390 0.610 29 H 0.392 0.608 30 H 0.068 0.932 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.707 -3.185 -0.723 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.212 4.212 3 Si 0.783 3.217 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.154 1.154 7 C -0.458 4.458 8 H 0.075 0.925 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.489 6.489 12 C -0.087 4.087 13 N -0.232 5.232 14 C -0.116 4.116 15 C 0.041 3.959 16 H 0.110 0.890 17 O -0.368 6.368 18 C 0.044 3.956 19 H 0.116 0.884 20 O -0.375 6.375 21 C -0.124 4.124 22 H 0.089 0.911 23 H 0.225 0.775 24 H 0.093 0.907 25 H 0.145 0.855 26 H 0.101 0.899 27 H 0.044 0.956 28 H 0.238 0.762 29 H 0.242 0.758 30 H 0.087 0.913 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.055 -4.048 -0.493 19.486 hybrid contribution -0.477 1.420 -0.502 1.580 sum 18.578 -2.627 -0.995 18.789 Atomic orbital electron populations 1.69801 1.08112 1.29302 1.50094 1.26104 0.96466 1.02691 0.95982 0.85387 0.79598 0.76816 0.79886 1.18325 1.19839 1.15366 1.19008 0.81347 0.95016 1.50465 0.92500 1.42016 1.05910 1.07487 1.67598 1.20791 0.90720 0.83503 0.81457 1.90478 1.71292 1.32156 1.55021 1.22132 0.90490 0.91643 1.04446 1.64557 1.04944 1.10377 1.43280 1.23962 1.00126 0.95673 0.91886 1.22973 0.93871 0.93847 0.85212 0.89023 1.86543 1.41126 1.78063 1.31077 1.22762 0.93044 0.94812 0.85020 0.88427 1.86667 1.40161 1.81266 1.29361 1.23928 0.88405 0.98204 1.01890 0.91082 0.77496 0.90688 0.85508 0.89868 0.95589 0.76159 0.75782 0.91346 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.96 21.66 0.30 -55.91 16 2 C -0.01 -0.75 5.50 84.92 0.47 -0.29 16 3 Si 0.96 38.71 27.74 68.60 1.90 40.61 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 7 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 8 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 9 N -0.59 -27.89 5.09 -306.99 -1.56 -29.45 16 10 C 0.45 20.33 7.49 87.66 0.66 20.99 16 11 O -0.60 -32.97 13.10 -3.07 -0.04 -33.01 16 12 C 0.04 1.39 5.52 85.56 0.47 1.86 16 13 N -0.51 -15.45 5.26 -887.56 -4.67 -20.12 16 14 C 0.01 0.41 5.02 86.65 0.44 0.84 16 15 C 0.10 2.72 4.39 31.80 0.14 2.85 16 16 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 17 O -0.56 -15.72 12.71 -129.73 -1.65 -17.37 16 18 C 0.10 2.20 4.31 31.48 0.14 2.34 16 19 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 20 O -0.57 -12.82 12.57 -129.73 -1.63 -14.45 16 21 C 0.00 0.07 6.51 86.45 0.56 0.63 16 22 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 23 H 0.39 15.28 5.76 -92.71 -0.53 14.74 16 24 H 0.08 2.06 7.81 -2.39 -0.02 2.05 16 25 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 26 H 0.08 3.47 5.97 -2.39 -0.01 3.46 16 27 H 0.03 0.98 8.02 -2.39 -0.02 0.96 16 28 H 0.39 8.11 9.12 -74.06 -0.68 7.44 16 29 H 0.39 4.60 9.11 -74.06 -0.67 3.93 16 30 H 0.07 1.26 7.39 -2.38 -0.02 1.25 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -80.01 261.48 -4.38 -84.39 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -0.76 Total: 34.52 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 3.72 Total: 10.78 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -5.93 Total: -105.48 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: -3.32 Total: -64.83 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.90 Total: 40.61 kcal Total: -80.01 -4.38 -84.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086331756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.776 kcal (2) G-P(sol) polarization free energy of solvation -80.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds