Wall clock time and date at job start Sun Mar 29 2020 21:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38458 * 120.01238 * 89.99862 * 11 10 9 13 13 F 1.35101 * 119.99156 * 0.02562 * 12 11 10 14 14 C 1.38424 * 120.02071 * 179.97438 * 12 11 10 15 15 C 1.38237 * 120.04690 * 0.02562 * 14 12 11 16 16 C 1.38363 * 120.02219 * 359.97438 * 15 14 12 17 17 F 1.35098 * 120.01273 * 180.02562 * 16 15 14 18 18 C 1.38354 * 120.01504 * 269.72833 * 11 10 9 19 19 F 1.35103 * 120.01867 * 359.97438 * 18 11 10 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.08005 * 119.97953 * 180.02562 * 14 12 11 26 26 H 1.07998 * 119.99134 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1449 -5.5673 -1.1975 13 9 1.4826 -4.9830 -2.3678 14 6 0.4533 -6.7664 -1.1971 15 6 0.1075 -7.3656 -0.0003 16 6 0.4530 -6.7675 1.1986 17 9 0.1155 -7.3536 2.3681 18 6 1.1509 -5.5691 1.1994 19 9 1.4940 -4.9873 2.3696 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 0.1835 -7.2341 -2.1325 26 1 -0.4317 -8.3013 -0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104530599.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:28 Heat of formation + Delta-G solvation = -127.174130 kcal Electronic energy + Delta-G solvation = -15484.233820 eV Core-core repulsion = 12305.905779 eV Total energy + Delta-G solvation = -3178.328041 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.30920 -48.73789 -48.36806 -38.65355 -34.27732 -32.23710 -29.89557 -29.09693 -25.40789 -22.83880 -22.55514 -20.55312 -18.04962 -17.71291 -17.16044 -16.44040 -16.13354 -15.65867 -15.23958 -14.75149 -14.47572 -14.40557 -14.30572 -13.47203 -13.10649 -12.76748 -12.39925 -11.98210 -11.76576 -11.47673 -10.99115 -10.96224 -10.58514 -9.98962 -9.81654 -9.17940 -8.64211 -8.43734 -8.38979 -6.03257 -4.06590 0.87240 0.98243 3.27447 3.30536 3.37831 3.42166 3.80370 4.16615 4.43085 4.52128 4.58477 4.80333 5.05083 5.32968 5.62407 5.77145 5.81230 5.95558 6.07205 6.40040 6.43199 6.73018 6.92046 7.58932 7.68599 7.94037 8.33471 8.99148 9.57679 11.08144 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.035125 B = 0.007106 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.955930 B = 3939.465849 C = 4400.280587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.102 4.102 12 C 0.119 3.881 13 F -0.122 7.122 14 C -0.136 4.136 15 C -0.115 4.115 16 C 0.054 3.946 17 F -0.130 7.130 18 C 0.096 3.904 19 F -0.116 7.116 20 H 0.261 0.739 21 H 0.019 0.981 22 H 0.020 0.980 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.149 0.851 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 -14.531 -1.084 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.119 4.119 11 C -0.104 4.104 12 C 0.099 3.901 13 F -0.100 7.100 14 C -0.155 4.155 15 C -0.134 4.134 16 C 0.034 3.966 17 F -0.109 7.109 18 C 0.075 3.925 19 F -0.094 7.094 20 H 0.071 0.929 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.658 -14.384 -1.034 14.436 hybrid contribution 0.358 1.040 0.249 1.128 sum 1.017 -13.344 -0.785 13.405 Atomic orbital electron populations 1.69977 1.06109 1.26651 1.50528 1.25017 0.94863 0.99340 0.95125 0.86494 0.80105 0.83560 0.77608 1.19645 1.20954 1.20952 1.21201 0.93129 0.90610 1.51038 0.92342 1.19086 0.93523 0.90291 0.97719 1.20862 0.98778 0.89348 1.02886 1.20404 1.00802 0.99249 0.89920 1.17216 0.99233 0.92498 0.81167 1.91546 1.90075 1.83699 1.44678 1.20977 1.00326 0.94896 0.99338 1.20713 1.01869 1.01341 0.89485 1.17637 1.03028 0.93291 0.82653 1.91511 1.90577 1.83216 1.45552 1.17185 1.00936 0.92037 0.82322 1.91555 1.89915 1.83508 1.44432 0.92939 0.96228 0.96173 0.90714 0.90886 0.83361 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 15 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 15 9 C 0.03 0.81 4.95 -27.88 -0.14 0.67 15 10 C -0.08 -1.71 4.93 -27.89 -0.14 -1.85 15 11 C -0.10 -1.85 5.14 -104.50 -0.54 -2.38 15 12 C 0.12 1.89 7.24 -39.43 -0.29 1.60 15 13 F -0.12 -2.08 16.48 2.25 0.04 -2.04 15 14 C -0.14 -1.65 10.02 -39.51 -0.40 -2.05 15 15 C -0.12 -1.34 10.02 -39.54 -0.40 -1.74 15 16 C 0.05 0.80 7.31 -39.37 -0.29 0.51 15 17 F -0.13 -1.92 17.18 2.25 0.04 -1.88 15 18 C 0.10 1.66 7.25 -39.37 -0.29 1.38 15 19 F -0.12 -2.20 16.38 2.25 0.04 -2.16 15 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 21 H 0.02 0.55 8.14 -51.93 -0.42 0.12 15 22 H 0.02 0.56 8.14 -51.93 -0.42 0.13 15 23 H 0.07 1.51 7.64 -51.93 -0.40 1.12 15 24 H 0.07 1.51 7.63 -51.93 -0.40 1.11 15 25 H 0.15 1.32 8.06 -52.48 -0.42 0.89 15 26 H 0.15 1.22 8.06 -52.49 -0.42 0.80 15 LS Contribution 249.34 15.07 3.76 3.76 Total: -1.00 -30.45 249.34 -5.31 -35.76 By element: Atomic # 1 Polarization: -4.37 SS G_CDS: -2.03 Total: -6.40 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -2.87 Total: -17.43 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.11 Total: -6.08 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.45 -5.31 -35.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104530599.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.415 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds