Wall clock time and date at job start Sun Mar 29 2020 21:45:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86797 * 120.00353 * 2 1
4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1
5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1
6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1
7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2
11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7
12 12 C 1.38458 * 120.01238 * 89.99862 * 11 10 9
13 13 F 1.35101 * 119.99156 * 0.02562 * 12 11 10
14 14 C 1.38424 * 120.02071 * 179.97438 * 12 11 10
15 15 C 1.38237 * 120.04690 * 0.02562 * 14 12 11
16 16 C 1.38363 * 120.02219 * 359.97438 * 15 14 12
17 17 F 1.35098 * 120.01273 * 180.02562 * 16 15 14
18 18 C 1.38354 * 120.01504 * 269.72833 * 11 10 9
19 19 F 1.35103 * 120.01867 * 359.97438 * 18 11 10
20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3
21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2
22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2
23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7
24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7
25 25 H 1.08005 * 119.97953 * 180.02562 * 14 12 11
26 26 H 1.07998 * 119.99134 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8905 2.3963 -1.2126
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 6 1.4916 -4.9672 0.0012
12 6 1.1449 -5.5673 -1.1975
13 9 1.4826 -4.9830 -2.3678
14 6 0.4533 -6.7664 -1.1971
15 6 0.1075 -7.3656 -0.0003
16 6 0.4530 -6.7675 1.1986
17 9 0.1155 -7.3536 2.3681
18 6 1.1509 -5.5691 1.1994
19 9 1.4940 -4.9873 2.3696
20 1 -0.4850 0.8401 0.0004
21 1 0.6239 -2.5567 0.8903
22 1 0.6246 -2.5571 -0.8897
23 1 2.8718 -3.6044 -0.8895
24 1 2.8718 -3.6044 0.8904
25 1 0.1835 -7.2341 -2.1325
26 1 -0.4317 -8.3013 -0.0010
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000104530599.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:45:28
Heat of formation + Delta-G solvation = -127.174130 kcal
Electronic energy + Delta-G solvation = -15484.233820 eV
Core-core repulsion = 12305.905779 eV
Total energy + Delta-G solvation = -3178.328041 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.061 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-49.30920 -48.73789 -48.36806 -38.65355 -34.27732 -32.23710 -29.89557 -29.09693
-25.40789 -22.83880 -22.55514 -20.55312 -18.04962 -17.71291 -17.16044 -16.44040
-16.13354 -15.65867 -15.23958 -14.75149 -14.47572 -14.40557 -14.30572 -13.47203
-13.10649 -12.76748 -12.39925 -11.98210 -11.76576 -11.47673 -10.99115 -10.96224
-10.58514 -9.98962 -9.81654 -9.17940 -8.64211 -8.43734 -8.38979 -6.03257
-4.06590 0.87240 0.98243 3.27447 3.30536 3.37831 3.42166 3.80370
4.16615 4.43085 4.52128 4.58477 4.80333 5.05083 5.32968 5.62407
5.77145 5.81230 5.95558 6.07205 6.40040 6.43199 6.73018 6.92046
7.58932 7.68599 7.94037 8.33471 8.99148 9.57679 11.08144
Molecular weight = 230.06amu
Principal moments of inertia in cm(-1)
A = 0.035125 B = 0.007106 C = 0.006362
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 796.955930 B = 3939.465849 C = 4400.280587
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.058 3.942
3 Si 0.895 3.105
4 H -0.272 1.272
5 H -0.283 1.283
6 H -0.283 1.283
7 C -0.522 4.522
8 H 0.058 0.942
9 C 0.031 3.969
10 C -0.081 4.081
11 C -0.102 4.102
12 C 0.119 3.881
13 F -0.122 7.122
14 C -0.136 4.136
15 C -0.115 4.115
16 C 0.054 3.946
17 F -0.130 7.130
18 C 0.096 3.904
19 F -0.116 7.116
20 H 0.261 0.739
21 H 0.019 0.981
22 H 0.020 0.980
23 H 0.074 0.926
24 H 0.073 0.927
25 H 0.149 0.851
26 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.790 -14.531 -1.084 14.592
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.143 4.143
3 Si 0.722 3.278
4 H -0.196 1.196
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.560 4.560
8 H 0.077 0.923
9 C -0.006 4.006
10 C -0.119 4.119
11 C -0.104 4.104
12 C 0.099 3.901
13 F -0.100 7.100
14 C -0.155 4.155
15 C -0.134 4.134
16 C 0.034 3.966
17 F -0.109 7.109
18 C 0.075 3.925
19 F -0.094 7.094
20 H 0.071 0.929
21 H 0.038 0.962
22 H 0.038 0.962
23 H 0.093 0.907
24 H 0.091 0.909
25 H 0.166 0.834
26 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 0.658 -14.384 -1.034 14.436
hybrid contribution 0.358 1.040 0.249 1.128
sum 1.017 -13.344 -0.785 13.405
Atomic orbital electron populations
1.69977 1.06109 1.26651 1.50528 1.25017 0.94863 0.99340 0.95125
0.86494 0.80105 0.83560 0.77608 1.19645 1.20954 1.20952 1.21201
0.93129 0.90610 1.51038 0.92342 1.19086 0.93523 0.90291 0.97719
1.20862 0.98778 0.89348 1.02886 1.20404 1.00802 0.99249 0.89920
1.17216 0.99233 0.92498 0.81167 1.91546 1.90075 1.83699 1.44678
1.20977 1.00326 0.94896 0.99338 1.20713 1.01869 1.01341 0.89485
1.17637 1.03028 0.93291 0.82653 1.91511 1.90577 1.83216 1.45552
1.17185 1.00936 0.92037 0.82322 1.91555 1.89915 1.83508 1.44432
0.92939 0.96228 0.96173 0.90714 0.90886 0.83361 0.83170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 15
2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15
3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 15
4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15
5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15
6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15
7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 15
8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 15
9 C 0.03 0.81 4.95 -27.88 -0.14 0.67 15
10 C -0.08 -1.71 4.93 -27.89 -0.14 -1.85 15
11 C -0.10 -1.85 5.14 -104.50 -0.54 -2.38 15
12 C 0.12 1.89 7.24 -39.43 -0.29 1.60 15
13 F -0.12 -2.08 16.48 2.25 0.04 -2.04 15
14 C -0.14 -1.65 10.02 -39.51 -0.40 -2.05 15
15 C -0.12 -1.34 10.02 -39.54 -0.40 -1.74 15
16 C 0.05 0.80 7.31 -39.37 -0.29 0.51 15
17 F -0.13 -1.92 17.18 2.25 0.04 -1.88 15
18 C 0.10 1.66 7.25 -39.37 -0.29 1.38 15
19 F -0.12 -2.20 16.38 2.25 0.04 -2.16 15
20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15
21 H 0.02 0.55 8.14 -51.93 -0.42 0.12 15
22 H 0.02 0.56 8.14 -51.93 -0.42 0.13 15
23 H 0.07 1.51 7.64 -51.93 -0.40 1.12 15
24 H 0.07 1.51 7.63 -51.93 -0.40 1.11 15
25 H 0.15 1.32 8.06 -52.48 -0.42 0.89 15
26 H 0.15 1.22 8.06 -52.49 -0.42 0.80 15
LS Contribution 249.34 15.07 3.76 3.76
Total: -1.00 -30.45 249.34 -5.31 -35.76
By element:
Atomic # 1 Polarization: -4.37 SS G_CDS: -2.03 Total: -6.40 kcal
Atomic # 6 Polarization: -14.55 SS G_CDS: -2.87 Total: -17.43 kcal
Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal
Atomic # 9 Polarization: -6.20 SS G_CDS: 0.11 Total: -6.08 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal
Total LS contribution 3.76 Total: 3.76 kcal
Total: -30.45 -5.31 -35.76 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000104530599.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -91.415 kcal
(2) G-P(sol) polarization free energy of solvation -30.445 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.860 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.314 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.759 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds