Wall clock time and date at job start Sun Mar 29 2020 21:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00647 * 2 1 4 4 H 1.48500 * 109.47128 * 269.99827 * 3 2 1 5 5 H 1.48507 * 109.46913 * 29.99704 * 3 2 1 6 6 H 1.48494 * 109.47157 * 149.99566 * 3 2 1 7 7 C 1.37884 * 119.99511 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47058 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47058 * 180.02562 * 10 9 7 12 12 C 1.38244 * 119.97701 * 265.01557 * 11 10 9 13 13 C 1.38358 * 120.02445 * 179.70349 * 12 11 10 14 14 F 1.35101 * 120.01171 * 180.30523 * 13 12 11 15 15 C 1.38688 * 119.97835 * 0.57546 * 13 12 11 16 16 F 1.35104 * 120.02052 * 179.69753 * 15 13 12 17 17 C 1.38345 * 119.95689 * 359.42955 * 15 13 12 18 18 C 1.38419 * 119.97772 * 85.00218 * 11 10 9 19 19 F 1.35097 * 119.99101 * 0.02562 * 18 11 10 20 20 H 0.97008 * 119.99593 * 0.02562 * 1 2 3 21 21 H 1.08990 * 109.47587 * 60.00304 * 9 7 2 22 22 H 1.09002 * 109.47411 * 299.99885 * 9 7 2 23 23 H 1.09002 * 109.47195 * 59.99700 * 10 9 7 24 24 H 1.09002 * 109.46720 * 300.00069 * 10 9 7 25 25 H 1.08006 * 119.98880 * 0.02562 * 12 11 10 26 26 H 1.07997 * 120.01485 * 180.29410 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2508 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4913 -4.9672 0.0012 12 6 1.2347 -5.6172 1.1940 13 6 0.5375 -6.8123 1.1951 14 9 0.2814 -7.4442 2.3614 15 6 0.1064 -7.3642 -0.0020 16 9 -0.5691 -8.5343 -0.0024 17 6 0.3638 -6.7131 -1.1952 18 6 1.0563 -5.5141 -1.1937 19 9 1.3080 -4.8781 -2.3587 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6238 -2.5567 0.8903 23 1 2.8710 -3.6042 0.8923 24 1 2.8723 -3.6049 -0.8877 25 1 1.5740 -5.1894 2.1258 26 1 0.0244 -7.1397 -2.1275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104530604.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:32 Heat of formation + Delta-G solvation = -129.029869 kcal Electronic energy + Delta-G solvation = -15245.832017 eV Core-core repulsion = 12067.423505 eV Total energy + Delta-G solvation = -3178.408512 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.44415 -48.73893 -48.51638 -38.76313 -34.17344 -32.17846 -30.38297 -28.80390 -25.24829 -23.31693 -22.37425 -20.54613 -18.17513 -17.72669 -17.15327 -16.46225 -16.28077 -15.47346 -15.24559 -14.92854 -14.58567 -14.50614 -14.21331 -13.91785 -13.16587 -12.69237 -12.31192 -12.11984 -11.78589 -11.45002 -10.97592 -10.94940 -10.62935 -10.01231 -9.78170 -9.22485 -8.95489 -8.41914 -8.28803 -6.06396 -4.10105 0.87404 0.93314 3.27267 3.29022 3.35543 3.38396 3.71639 4.09824 4.40315 4.49999 4.53888 4.84368 5.07448 5.29796 5.57948 5.74250 5.86645 5.90398 6.07436 6.41577 6.46953 6.70433 6.89458 7.56001 7.65808 7.90913 8.30113 8.95910 9.54510 11.04728 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.042536 B = 0.006028 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.112087 B = 4643.522753 C = 4951.646328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.081 4.081 11 C -0.070 4.070 12 C -0.100 4.100 13 C 0.059 3.941 14 F -0.130 7.130 15 C 0.076 3.924 16 F -0.128 7.128 17 C -0.163 4.163 18 C 0.121 3.879 19 F -0.120 7.120 20 H 0.262 0.738 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.156 0.844 26 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 -12.955 -0.080 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.118 4.118 11 C -0.071 4.071 12 C -0.119 4.119 13 C 0.039 3.961 14 F -0.108 7.108 15 C 0.056 3.944 16 F -0.107 7.107 17 C -0.183 4.183 18 C 0.101 3.899 19 F -0.098 7.098 20 H 0.071 0.929 21 H 0.039 0.961 22 H 0.038 0.962 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.173 0.827 26 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.494 -12.881 -0.077 12.968 hybrid contribution 0.144 0.681 -0.039 0.697 sum 1.637 -12.200 -0.116 12.310 Atomic orbital electron populations 1.69966 1.06100 1.26794 1.50330 1.25018 0.94853 0.99330 0.95111 0.86562 0.79808 0.83282 0.78173 1.20593 1.21188 1.19807 1.21176 0.93088 0.90681 1.51292 0.92407 1.19108 0.93586 0.90315 0.97823 1.20914 0.98633 0.89634 1.02664 1.20433 0.98234 0.98072 0.90373 1.20906 0.98541 0.92607 0.99852 1.17627 1.03654 0.94403 0.80454 1.91515 1.92492 1.81400 1.45400 1.17119 0.99656 0.84896 0.92763 1.91518 1.77604 1.44354 1.97211 1.20869 1.03120 0.96030 0.98290 1.17173 0.99289 0.91282 0.82140 1.91555 1.91888 1.80966 1.45426 0.92861 0.96149 0.96169 0.90969 0.91018 0.82658 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.71 4.96 -27.88 -0.14 0.57 15 10 C -0.08 -1.56 5.05 -27.88 -0.14 -1.70 15 11 C -0.07 -1.16 5.14 -104.55 -0.54 -1.70 15 12 C -0.10 -1.48 9.66 -39.53 -0.38 -1.86 15 13 C 0.06 0.86 7.31 -39.37 -0.29 0.57 15 14 F -0.13 -1.90 17.18 2.25 0.04 -1.86 15 15 C 0.08 1.07 7.31 -39.38 -0.29 0.78 15 16 F -0.13 -1.80 17.18 2.25 0.04 -1.76 15 17 C -0.16 -2.23 10.00 -39.46 -0.39 -2.62 15 18 C 0.12 1.93 7.24 -39.43 -0.29 1.64 15 19 F -0.12 -2.07 16.56 2.25 0.04 -2.03 15 20 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.02 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 23 H 0.07 1.28 8.05 -51.93 -0.42 0.86 15 24 H 0.07 1.36 7.79 -51.93 -0.40 0.96 15 25 H 0.16 2.04 8.06 -52.48 -0.42 1.62 15 26 H 0.15 1.70 8.06 -52.49 -0.42 1.27 15 LS Contribution 250.58 15.07 3.78 3.78 Total: -1.00 -28.84 250.58 -5.31 -34.16 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: -2.05 Total: -5.40 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.86 Total: -17.40 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.64 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.11 Total: -5.65 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.84 -5.31 -34.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104530604.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.872 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds