Wall clock time and date at job start Sun Mar 29 2020 21:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00647 * 2 1 4 4 H 1.48500 * 109.47128 * 269.99827 * 3 2 1 5 5 H 1.48507 * 109.46913 * 29.99704 * 3 2 1 6 6 H 1.48494 * 109.47157 * 149.99566 * 3 2 1 7 7 C 1.37884 * 119.99511 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47058 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47058 * 180.02562 * 10 9 7 12 12 C 1.38244 * 119.97701 * 265.01557 * 11 10 9 13 13 C 1.38358 * 120.02445 * 179.70349 * 12 11 10 14 14 F 1.35101 * 120.01171 * 180.30523 * 13 12 11 15 15 C 1.38688 * 119.97835 * 0.57546 * 13 12 11 16 16 F 1.35104 * 120.02052 * 179.69753 * 15 13 12 17 17 C 1.38345 * 119.95689 * 359.42955 * 15 13 12 18 18 C 1.38419 * 119.97772 * 85.00218 * 11 10 9 19 19 F 1.35097 * 119.99101 * 0.02562 * 18 11 10 20 20 H 0.97008 * 119.99593 * 0.02562 * 1 2 3 21 21 H 1.08990 * 109.47587 * 60.00304 * 9 7 2 22 22 H 1.09002 * 109.47411 * 299.99885 * 9 7 2 23 23 H 1.09002 * 109.47195 * 59.99700 * 10 9 7 24 24 H 1.09002 * 109.46720 * 300.00069 * 10 9 7 25 25 H 1.08006 * 119.98880 * 0.02562 * 12 11 10 26 26 H 1.07997 * 120.01485 * 180.29410 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1943 0.0010 9 6 1.2508 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4913 -4.9672 0.0012 12 6 1.2347 -5.6172 1.1940 13 6 0.5375 -6.8123 1.1951 14 9 0.2814 -7.4442 2.3614 15 6 0.1064 -7.3642 -0.0020 16 9 -0.5691 -8.5343 -0.0024 17 6 0.3638 -6.7131 -1.1952 18 6 1.0563 -5.5141 -1.1937 19 9 1.3080 -4.8781 -2.3587 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6238 -2.5567 0.8903 23 1 2.8710 -3.6042 0.8923 24 1 2.8723 -3.6049 -0.8877 25 1 1.5740 -5.1894 2.1258 26 1 0.0244 -7.1397 -2.1275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104530604.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:31 Heat of formation + Delta-G solvation = -143.854274 kcal Electronic energy + Delta-G solvation = -15246.474851 eV Core-core repulsion = 12067.423505 eV Total energy + Delta-G solvation = -3179.051346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.59743 -50.03705 -49.67068 -39.99663 -35.95967 -33.96432 -31.63546 -30.39134 -27.01268 -24.55232 -23.94732 -22.11737 -19.36977 -18.94255 -18.66851 -18.16132 -17.53273 -16.73536 -16.61353 -16.40988 -16.07405 -15.77086 -15.42079 -15.16125 -14.76404 -14.45007 -13.94016 -13.54662 -13.27627 -12.92024 -12.80310 -12.44223 -12.30858 -11.80809 -11.61497 -11.23404 -10.55189 -10.15772 -9.57578 -8.19313 -6.30644 -0.34331 -0.22641 1.42966 1.43617 1.54638 2.06662 2.42576 2.54833 2.91518 3.14863 3.30797 3.38656 3.58370 3.91831 4.40727 4.43757 4.65029 4.67678 4.75563 4.84641 5.04840 5.10310 5.49141 5.59871 5.68332 5.82898 6.21271 6.85916 7.38987 8.92397 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.042536 B = 0.006028 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.112087 B = 4643.522753 C = 4951.646328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.033 3.967 10 C -0.068 4.068 11 C -0.087 4.087 12 C -0.093 4.093 13 C 0.058 3.942 14 F -0.129 7.129 15 C 0.082 3.918 16 F -0.125 7.125 17 C -0.148 4.148 18 C 0.109 3.891 19 F -0.132 7.132 20 H 0.263 0.737 21 H -0.011 1.011 22 H -0.002 1.002 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.171 0.829 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 -13.502 0.061 13.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.004 4.004 10 C -0.105 4.105 11 C -0.089 4.089 12 C -0.112 4.112 13 C 0.038 3.962 14 F -0.107 7.107 15 C 0.062 3.938 16 F -0.103 7.103 17 C -0.167 4.167 18 C 0.089 3.911 19 F -0.110 7.110 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.017 0.983 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.188 0.812 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.287 -13.446 0.067 13.639 hybrid contribution -0.145 0.761 -0.075 0.779 sum 2.142 -12.685 -0.008 12.864 Atomic orbital electron populations 1.70102 1.07863 1.27783 1.51606 1.25960 0.95698 1.03342 0.94712 0.85458 0.78789 0.78478 0.78397 1.20017 1.20976 1.18402 1.21675 0.93786 0.91944 1.50590 0.91550 1.18946 0.94043 0.92200 0.95200 1.20604 0.97541 0.88972 1.03392 1.20219 0.99530 0.97616 0.91504 1.20975 0.97949 0.92459 0.99782 1.17646 1.03581 0.94319 0.80654 1.91521 1.92461 1.81325 1.45432 1.17163 0.99082 0.84814 0.92726 1.91536 1.77449 1.44126 1.97189 1.21022 1.01606 0.94760 0.99346 1.17356 1.00041 0.92130 0.81573 1.91526 1.92111 1.81372 1.45990 0.92801 0.99229 0.98342 0.89440 0.91102 0.81172 0.79999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.29 21.45 0.28 -55.79 15 2 C 0.00 0.04 5.46 84.66 0.46 0.51 15 3 Si 0.96 43.29 29.54 68.60 2.03 45.32 15 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 15 7 C -0.54 -29.75 9.11 25.60 0.23 -29.52 15 8 H 0.07 3.44 7.74 -2.91 -0.02 3.41 15 9 C 0.03 1.68 4.96 29.85 0.15 1.83 15 10 C -0.07 -2.58 5.05 29.85 0.15 -2.43 15 11 C -0.09 -2.84 5.14 -19.82 -0.10 -2.94 15 12 C -0.09 -2.61 9.66 22.30 0.22 -2.40 15 13 C 0.06 1.58 7.31 22.41 0.16 1.75 15 14 F -0.13 -3.52 17.18 44.97 0.77 -2.75 15 15 C 0.08 2.14 7.31 22.40 0.16 2.31 15 16 F -0.12 -3.18 17.18 44.97 0.77 -2.40 15 17 C -0.15 -3.71 10.00 22.35 0.22 -3.49 15 18 C 0.11 3.35 7.24 22.37 0.16 3.52 15 19 F -0.13 -4.49 16.56 44.97 0.74 -3.75 15 20 H 0.26 14.89 8.31 -92.70 -0.77 14.12 15 21 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 15 22 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 15 23 H 0.09 3.01 8.05 -2.39 -0.02 2.99 15 24 H 0.07 2.67 7.79 -2.39 -0.02 2.65 15 25 H 0.17 4.18 8.06 -2.91 -0.02 4.16 15 26 H 0.18 3.47 8.06 -2.91 -0.02 3.45 15 Total: -1.00 -61.31 250.58 7.63 -53.68 By element: Atomic # 1 Polarization: -4.64 SS G_CDS: 1.20 Total: -3.44 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 1.82 Total: -30.87 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.28 Total: -55.79 kcal Atomic # 9 Polarization: -11.19 SS G_CDS: 2.29 Total: -8.90 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -61.31 7.63 -53.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104530604.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.170 kcal (2) G-P(sol) polarization free energy of solvation -61.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds