Wall clock time and date at job start Sun Mar 29 2020 21:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47046 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46873 * 299.99705 * 3 2 1 6 6 H 1.48497 * 109.47510 * 59.99740 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.38224 * 119.95300 * 269.72329 * 11 10 9 13 13 C 1.38428 * 120.04665 * 179.76680 * 12 11 10 14 14 F 1.35099 * 120.02607 * 180.27167 * 13 12 11 15 15 C 1.38596 * 119.95188 * 0.50625 * 13 12 11 16 16 F 1.35103 * 120.04536 * 179.72123 * 15 13 12 17 17 C 1.38595 * 119.91502 * 359.74444 * 15 13 12 18 18 F 1.35094 * 120.02677 * 179.97438 * 17 15 13 19 19 C 1.38222 * 119.96102 * 89.99684 * 11 10 9 20 20 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 22 22 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 24 24 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 25 25 H 1.08000 * 119.97691 * 0.02562 * 12 11 10 26 26 H 1.08004 * 119.97628 * 359.95426 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 -0.0001 12 6 1.1514 -5.5681 1.1972 13 6 0.4550 -6.7645 1.1989 14 9 0.1176 -7.3487 2.3694 15 6 0.1084 -7.3651 -0.0011 16 9 -0.5663 -8.5356 -0.0016 17 6 0.4552 -6.7636 -1.2006 18 9 0.1189 -7.3474 -2.3716 19 6 1.1470 -5.5646 -1.1979 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8719 -3.6044 -0.8895 24 1 2.8719 -3.6043 0.8905 25 1 1.4252 -5.1018 2.1321 26 1 1.4172 -5.0954 -2.1324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104530989.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:33 Heat of formation + Delta-G solvation = -129.836355 kcal Electronic energy + Delta-G solvation = -15125.498071 eV Core-core repulsion = 11947.054587 eV Total energy + Delta-G solvation = -3178.443484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.061 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.62396 -49.06699 -48.31783 -38.94708 -34.09839 -32.09399 -30.42068 -28.95563 -25.31244 -23.24907 -22.47569 -20.58857 -17.98120 -17.76537 -17.29438 -16.63722 -16.35246 -15.84417 -15.36082 -14.81269 -14.80485 -14.55848 -14.24491 -13.76518 -13.27962 -12.70043 -12.36122 -12.01866 -11.74867 -11.56217 -11.02153 -11.01136 -10.63252 -10.05808 -9.77203 -9.24718 -8.84008 -8.47002 -8.45918 -6.10400 -4.14488 0.87778 0.89132 3.25363 3.29220 3.33735 3.36993 3.48924 4.27153 4.30592 4.37323 4.56950 4.73187 5.18583 5.25968 5.57310 5.77387 5.89090 5.92035 6.04182 6.38545 6.56679 6.67288 6.85577 7.52307 7.61120 7.87053 8.25638 8.92203 9.50784 11.00573 Molecular weight = 230.06amu Principal moments of inertia in cm(-1) A = 0.041948 B = 0.005649 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.332419 B = 4955.132042 C = 5276.820627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.082 4.082 11 C -0.006 4.006 12 C -0.137 4.137 13 C 0.099 3.901 14 F -0.125 7.125 15 C 0.009 3.991 16 F -0.126 7.126 17 C 0.099 3.901 18 F -0.125 7.125 19 C -0.137 4.137 20 H 0.262 0.738 21 H 0.021 0.979 22 H 0.021 0.979 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.153 0.847 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -11.958 0.000 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.120 4.120 11 C -0.007 4.007 12 C -0.156 4.156 13 C 0.079 3.921 14 F -0.104 7.104 15 C -0.012 4.012 16 F -0.105 7.105 17 C 0.078 3.922 18 F -0.104 7.104 19 C -0.156 4.156 20 H 0.071 0.929 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.171 0.829 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.070 -11.938 0.000 12.116 hybrid contribution -0.012 0.463 -0.001 0.463 sum 2.058 -11.476 -0.002 11.659 Atomic orbital electron populations 1.69971 1.06098 1.26752 1.50301 1.25021 0.94848 0.99368 0.95086 0.86517 0.80084 0.83625 0.77665 1.19659 1.20966 1.20959 1.21223 0.93144 0.90683 1.51317 0.92324 1.19139 0.93599 0.90301 0.97964 1.20988 0.98539 0.89787 1.02639 1.20201 0.94008 0.96032 0.90429 1.21151 1.00097 0.93451 1.00866 1.17362 1.01046 0.93991 0.79749 1.91529 1.90456 1.83621 1.44747 1.17468 1.04369 0.86662 0.92741 1.91508 1.77808 1.44016 1.97157 1.17360 1.01090 0.93959 0.79741 1.91528 1.90481 1.83643 1.44700 1.21150 1.00136 0.93408 1.00865 0.92875 0.96094 0.96082 0.91020 0.91013 0.82911 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.05 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 7 C -0.53 -13.84 9.11 -34.44 -0.31 -14.15 15 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 15 9 C 0.03 0.63 4.96 -27.88 -0.14 0.50 15 10 C -0.08 -1.45 5.28 -27.88 -0.15 -1.60 15 11 C -0.01 -0.10 5.13 -104.63 -0.54 -0.63 15 12 C -0.14 -2.00 9.67 -39.52 -0.38 -2.38 15 13 C 0.10 1.47 7.31 -39.38 -0.29 1.18 15 14 F -0.13 -1.86 17.18 2.25 0.04 -1.83 15 15 C 0.01 0.13 7.31 -39.32 -0.29 -0.16 15 16 F -0.13 -1.98 17.10 2.25 0.04 -1.94 15 17 C 0.10 1.47 7.31 -39.38 -0.29 1.18 15 18 F -0.13 -1.86 17.18 2.25 0.04 -1.83 15 19 C -0.14 -2.00 9.67 -39.52 -0.38 -2.38 15 20 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 21 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.10 15 23 H 0.07 1.19 8.08 -51.93 -0.42 0.77 15 24 H 0.07 1.20 8.08 -51.93 -0.42 0.78 15 25 H 0.15 2.01 8.06 -52.49 -0.42 1.58 15 26 H 0.15 2.01 8.06 -52.48 -0.42 1.59 15 LS Contribution 251.44 15.07 3.79 3.79 Total: -1.00 -28.02 251.44 -5.31 -33.33 By element: Atomic # 1 Polarization: -3.15 SS G_CDS: -2.07 Total: -5.22 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.86 Total: -16.94 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.74 Total: -25.05 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.12 Total: -5.59 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.02 -5.31 -33.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104530989.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.507 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds