Wall clock time and date at job start Sun Mar 29 2020 21:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48500 * 109.47117 * 270.00038 * 3 2 1 5 5 H 1.48499 * 109.47165 * 29.99822 * 3 2 1 6 6 H 1.48499 * 109.47312 * 149.99869 * 3 2 1 7 7 C 1.37873 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00696 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99700 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47151 * 180.02562 * 9 7 2 11 11 C 1.37003 * 126.40602 * 100.00283 * 10 9 7 12 12 C 1.34626 * 106.83120 * 179.97438 * 11 10 9 13 13 N 1.34176 * 108.04620 * 0.26782 * 12 11 10 14 14 C 1.30599 * 109.25438 * 359.55470 * 13 12 11 15 15 Br 1.89101 * 125.66050 * 180.17387 * 14 13 12 16 16 H 0.97007 * 120.00238 * 0.02562 * 1 2 3 17 17 H 1.09007 * 109.46801 * 60.01063 * 9 7 2 18 18 H 1.08998 * 109.47391 * 300.00661 * 9 7 2 19 19 H 1.07997 * 126.57868 * 359.94485 * 11 10 9 20 20 H 1.08002 * 125.97315 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.5858 -4.3551 1.0853 12 6 3.4692 -5.2687 0.6411 13 7 3.6272 -5.0865 -0.6788 14 6 2.8672 -4.0996 -1.0714 15 35 2.7262 -3.4542 -2.8432 16 1 -0.4851 0.8401 -0.0004 17 1 0.6241 -2.5567 -0.8905 18 1 0.6246 -2.5571 0.8896 19 1 2.2447 -4.2309 2.1025 20 1 3.9674 -6.0144 1.2428 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108312115.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:37 Heat of formation + Delta-G solvation = 54.250398 kcal Electronic energy + Delta-G solvation = -9116.143142 eV Core-core repulsion = 7167.138120 eV Total energy + Delta-G solvation = -1949.005022 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 229.975 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.28294 -34.13270 -32.12253 -31.19259 -28.15272 -27.19083 -23.35154 -20.73364 -19.86380 -16.92816 -16.35526 -14.62923 -14.43452 -13.80661 -13.18385 -12.67880 -12.43217 -11.82334 -11.17052 -10.93903 -10.46250 -10.40357 -10.03573 -9.90436 -9.49201 -8.77535 -8.68793 -7.79460 -6.35430 -4.43154 1.77366 2.65613 3.17398 3.23970 3.28308 3.58620 3.87037 4.24888 5.00595 5.45871 5.77511 6.05556 6.38229 6.84172 7.05756 7.35109 7.55584 7.74338 7.76050 8.49520 8.62309 9.24473 10.73369 Molecular weight = 229.97amu Principal moments of inertia in cm(-1) A = 0.033050 B = 0.012578 C = 0.010255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.994949 B = 2225.614075 C = 2729.595363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.225 3.775 10 N -0.404 5.404 11 C -0.034 4.034 12 C -0.047 4.047 13 N -0.480 5.480 14 C 0.192 3.808 15 Br 0.045 6.955 16 H 0.269 0.731 17 H 0.055 0.945 18 H 0.054 0.946 19 H 0.173 0.827 20 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -5.506 -2.287 6.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.106 3.894 10 N -0.083 5.083 11 C -0.174 4.174 12 C -0.199 4.199 13 N -0.201 5.201 14 C -0.148 4.148 15 Br 0.126 6.874 16 H 0.079 0.921 17 H 0.073 0.927 18 H 0.072 0.928 19 H 0.190 0.810 20 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.048 -5.434 -3.462 7.128 hybrid contribution -0.137 1.310 1.022 1.668 sum 2.911 -4.124 -2.440 5.607 Atomic orbital electron populations 1.69913 1.06083 1.27829 1.48773 1.24893 0.94936 0.99488 0.94113 0.86359 0.79757 0.82084 0.78599 1.20104 1.20845 1.19575 1.21170 0.93651 0.89283 1.53542 0.91601 1.19985 0.87209 0.81837 1.00368 1.46099 1.31576 1.25037 1.05607 1.22801 1.03826 0.97186 0.93573 1.22177 1.03264 1.03087 0.91324 1.70201 1.21508 1.15830 1.12609 1.24193 1.01413 0.99259 0.89917 1.96655 1.97725 1.86815 1.06183 0.92145 0.92683 0.92830 0.80991 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 13.29 55.43 0.74 -23.53 14 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 14 3 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 14 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 14 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 14 7 C -0.54 -14.18 9.37 -34.44 -0.32 -14.50 14 8 H 0.07 1.80 7.81 -52.49 -0.41 1.39 14 9 C 0.22 5.46 5.61 -5.19 -0.03 5.43 14 10 N -0.40 -8.97 2.75 -117.87 -0.32 -9.29 14 11 C -0.03 -0.66 11.57 -16.52 -0.19 -0.85 14 12 C -0.05 -0.87 11.86 -17.81 -0.21 -1.08 14 13 N -0.48 -10.22 11.26 -13.04 -0.15 -10.37 14 14 C 0.19 4.20 8.36 -90.24 -0.75 3.45 14 15 Br 0.05 0.89 33.64 -68.01 -2.29 -1.40 14 16 H 0.27 6.94 8.31 -40.82 -0.34 6.60 14 17 H 0.06 1.40 8.02 -51.93 -0.42 0.98 14 18 H 0.05 1.32 8.12 -51.93 -0.42 0.90 14 19 H 0.17 2.72 8.06 -52.49 -0.42 2.29 14 20 H 0.17 2.42 8.06 -52.49 -0.42 2.00 14 LS Contribution 212.40 15.07 3.20 3.20 Total: -1.00 -28.29 212.40 -6.68 -34.97 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: -1.23 Total: -3.34 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.61 Total: -5.81 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.27 Total: -43.19 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 35 Polarization: 0.89 SS G_CDS: -2.29 Total: -1.40 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -28.29 -6.68 -34.97 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108312115.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.220 kcal (2) G-P(sol) polarization free energy of solvation -28.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds