Wall clock time and date at job start Sun Mar 29 2020 21:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48500 * 109.47117 * 270.00038 * 3 2 1 5 5 H 1.48499 * 109.47165 * 29.99822 * 3 2 1 6 6 H 1.48499 * 109.47312 * 149.99869 * 3 2 1 7 7 C 1.37873 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00696 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99700 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47151 * 180.02562 * 9 7 2 11 11 C 1.37003 * 126.40602 * 100.00283 * 10 9 7 12 12 C 1.34626 * 106.83120 * 179.97438 * 11 10 9 13 13 N 1.34176 * 108.04620 * 0.26782 * 12 11 10 14 14 C 1.30599 * 109.25438 * 359.55470 * 13 12 11 15 15 Br 1.89101 * 125.66050 * 180.17387 * 14 13 12 16 16 H 0.97007 * 120.00238 * 0.02562 * 1 2 3 17 17 H 1.09007 * 109.46801 * 60.01063 * 9 7 2 18 18 H 1.08998 * 109.47391 * 300.00661 * 9 7 2 19 19 H 1.07997 * 126.57868 * 359.94485 * 11 10 9 20 20 H 1.08002 * 125.97315 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.5858 -4.3551 1.0853 12 6 3.4692 -5.2687 0.6411 13 7 3.6272 -5.0865 -0.6788 14 6 2.8672 -4.0996 -1.0714 15 35 2.7262 -3.4542 -2.8432 16 1 -0.4851 0.8401 -0.0004 17 1 0.6241 -2.5567 -0.8905 18 1 0.6246 -2.5571 0.8896 19 1 2.2447 -4.2309 2.1025 20 1 3.9674 -6.0144 1.2428 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108312115.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:36 Heat of formation + Delta-G solvation = 37.957876 kcal Electronic energy + Delta-G solvation = -9116.849639 eV Core-core repulsion = 7167.138120 eV Total energy + Delta-G solvation = -1949.711518 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 229.975 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.87416 -35.99813 -33.98624 -32.75594 -29.79124 -29.00144 -25.27235 -22.27932 -21.51376 -18.88787 -18.08609 -16.47726 -16.13519 -15.34704 -14.80916 -14.37681 -14.14206 -13.71376 -13.02613 -12.73714 -12.33514 -12.07651 -11.82781 -11.48253 -11.12023 -10.72765 -10.49039 -9.33204 -8.36121 -6.50602 0.19342 1.04915 1.38755 1.40872 1.50610 2.06414 2.17787 2.38265 2.98165 3.94188 4.29892 4.53284 4.76047 4.87845 5.43576 5.54045 5.75095 5.81035 6.03717 6.58043 6.93385 7.20807 8.72686 Molecular weight = 229.97amu Principal moments of inertia in cm(-1) A = 0.033050 B = 0.012578 C = 0.010255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.994949 B = 2225.614075 C = 2729.595363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.029 3.971 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.053 0.947 9 C 0.240 3.760 10 N -0.419 5.419 11 C -0.040 4.040 12 C -0.042 4.042 13 N -0.494 5.494 14 C 0.165 3.835 15 Br 0.055 6.945 16 H 0.273 0.727 17 H 0.039 0.961 18 H 0.047 0.953 19 H 0.203 0.797 20 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 -5.479 -1.646 6.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.071 0.929 9 C 0.120 3.880 10 N -0.100 5.100 11 C -0.178 4.178 12 C -0.193 4.193 13 N -0.216 5.216 14 C -0.173 4.173 15 Br 0.135 6.865 16 H 0.082 0.918 17 H 0.057 0.943 18 H 0.065 0.935 19 H 0.220 0.780 20 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.728 -5.429 -2.820 7.164 hybrid contribution -0.329 1.223 0.842 1.521 sum 3.399 -4.206 -1.977 5.758 Atomic orbital electron populations 1.69986 1.07232 1.28816 1.49303 1.25612 0.95656 1.02404 0.93607 0.85463 0.78575 0.78514 0.78691 1.19713 1.19960 1.19491 1.21269 0.93078 0.90507 1.53716 0.92909 1.19589 0.87206 0.82065 0.99158 1.46075 1.31883 1.25210 1.06815 1.23462 1.03549 0.96522 0.94226 1.22881 1.02589 1.03279 0.90537 1.70231 1.21518 1.15694 1.14155 1.24540 1.02168 1.00016 0.90626 1.96629 1.97731 1.86786 1.05315 0.91786 0.94333 0.93453 0.78036 0.77439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.63 13.29 21.44 0.28 -49.34 14 2 C 0.03 1.50 5.46 84.65 0.46 1.96 14 3 Si 0.96 41.48 29.54 68.60 2.03 43.51 14 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 14 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 14 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 14 7 C -0.55 -28.67 9.37 25.60 0.24 -28.43 14 8 H 0.05 2.86 7.81 -2.91 -0.02 2.84 14 9 C 0.24 11.63 5.61 85.64 0.48 12.11 14 10 N -0.42 -18.28 2.75 -526.82 -1.45 -19.73 14 11 C -0.04 -1.44 11.57 83.06 0.96 -0.48 14 12 C -0.04 -1.45 11.86 83.51 0.99 -0.46 14 13 N -0.49 -20.25 11.26 -195.16 -2.20 -22.45 14 14 C 0.16 7.10 8.36 180.22 1.51 8.61 14 15 Br 0.05 2.12 33.64 -20.37 -0.69 1.43 14 16 H 0.27 13.92 8.31 -92.70 -0.77 13.15 14 17 H 0.04 1.98 8.02 -2.38 -0.02 1.96 14 18 H 0.05 2.33 8.12 -2.39 -0.02 2.31 14 19 H 0.20 5.80 8.06 -2.91 -0.02 5.78 14 20 H 0.21 5.18 8.06 -2.91 -0.02 5.16 14 Total: -1.00 -58.22 212.40 3.86 -54.36 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: 1.24 Total: -1.09 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 4.64 Total: -6.69 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -3.36 Total: -91.52 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 35 Polarization: 2.12 SS G_CDS: -0.69 Total: 1.43 kcal Total: -58.22 3.86 -54.36 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108312115.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.317 kcal (2) G-P(sol) polarization free energy of solvation -58.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds