Wall clock time and date at job start Sun Mar 29 2020 21:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42909 * 113.99565 * 2 1 4 4 C 1.52999 * 109.46642 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47475 * 65.00035 * 4 3 2 6 6 C 1.42901 * 114.00062 * 179.97438 * 5 4 3 7 7 C 1.53081 * 109.43648 * 89.79584 * 6 5 4 8 8 C 1.53190 * 109.29209 * 181.23634 * 7 6 5 9 9 N 1.46921 * 108.89311 * 305.57883 * 8 7 6 10 10 C 1.36940 * 120.63187 * 233.51481 * 9 8 7 11 11 H 1.08001 * 120.00319 * 152.61971 * 10 9 8 12 12 C 1.38813 * 119.99903 * 332.62203 * 10 9 8 13 13 N 1.31624 * 120.00070 * 159.34992 * 12 10 9 14 14 Si 1.86800 * 120.00077 * 339.35529 * 12 10 9 15 15 H 1.48494 * 109.47321 * 92.87851 * 14 12 10 16 16 H 1.48501 * 109.47194 * 212.88430 * 14 12 10 17 17 H 1.48509 * 109.46983 * 332.87654 * 14 12 10 18 18 C 1.46923 * 118.74178 * 53.54201 * 9 8 7 19 19 C 1.53035 * 109.46076 * 209.99927 * 6 5 4 20 20 H 1.09004 * 109.46385 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47330 * 299.99533 * 1 2 3 22 22 H 1.08993 * 109.47369 * 60.00387 * 1 2 3 23 23 H 1.08996 * 109.47055 * 59.99646 * 3 2 1 24 24 H 1.09004 * 109.46818 * 299.99885 * 3 2 1 25 25 H 1.08997 * 109.47352 * 304.99262 * 4 3 2 26 26 H 1.09005 * 109.47014 * 185.00048 * 4 3 2 27 27 H 1.08998 * 109.46157 * 329.97592 * 6 5 4 28 28 H 1.08992 * 109.38800 * 61.36053 * 7 6 5 29 29 H 1.09002 * 109.61927 * 301.25332 * 7 6 5 30 30 H 1.08999 * 109.58729 * 185.71870 * 8 7 6 31 31 H 1.09004 * 109.58886 * 65.43758 * 8 7 6 32 32 H 0.97001 * 119.99914 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.59094 * 66.17180 * 18 9 8 34 34 H 1.09001 * 109.59077 * 186.46452 * 18 9 8 35 35 H 1.09002 * 109.49848 * 58.68134 * 19 6 5 36 36 H 1.09002 * 109.52425 * 298.59607 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3812 0.4203 -1.3250 7 6 5.7842 -0.9387 -0.7470 8 6 7.3059 -1.0932 -0.8309 9 7 7.7303 -0.8756 -2.2206 10 6 8.4946 -1.8074 -2.8708 11 1 8.4434 -1.8926 -3.9462 12 6 9.3351 -2.6426 -2.1477 13 7 9.7510 -3.7746 -2.6751 14 14 9.8759 -2.1601 -0.4260 15 1 8.9440 -2.7491 0.5689 16 1 11.2496 -2.6669 -0.1783 17 1 9.8641 -0.6804 -0.2999 18 6 7.3197 0.3611 -2.8992 19 6 5.7973 0.4983 -2.7956 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 1.6884 1.8465 0.8899 24 1 1.6884 1.8464 -0.8900 25 1 3.8514 0.5684 0.8410 26 1 3.9784 2.1767 0.0889 27 1 5.8775 1.2126 -0.7646 28 1 5.3057 -1.7322 -1.3209 29 1 5.4689 -1.0015 0.2945 30 1 7.5892 -2.0973 -0.5153 31 1 7.7842 -0.3582 -0.1835 32 1 10.3380 -4.3583 -2.1696 33 1 7.7969 1.2164 -2.4208 34 1 7.6141 0.3177 -3.9478 35 1 5.4894 1.4580 -3.2105 36 1 5.3207 -0.3086 -3.3524 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115821839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:04 Heat of formation + Delta-G solvation = -70.889485 kcal Electronic energy + Delta-G solvation = -16589.592339 eV Core-core repulsion = 13881.804560 eV Total energy + Delta-G solvation = -2707.787778 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.84250 -37.80364 -36.19950 -32.61052 -30.82358 -30.35952 -29.46685 -26.39288 -24.77093 -22.89761 -22.47453 -21.66062 -19.45248 -17.01442 -16.76518 -16.70909 -15.54477 -15.42809 -14.87190 -14.58954 -14.10751 -13.80037 -13.58295 -13.01718 -12.62872 -12.57137 -12.13386 -11.94361 -11.74920 -11.51244 -11.28851 -10.83597 -10.67064 -10.49949 -10.09041 -10.06741 -9.87000 -9.73595 -9.51659 -9.00976 -8.59276 -6.96173 -5.91842 -3.27548 3.34514 3.49887 3.52894 3.66357 3.84411 4.55862 4.90675 4.98351 5.08065 5.15225 5.20507 5.24615 5.33997 5.39674 5.47021 5.48773 5.54128 5.61913 5.71107 5.91997 6.10442 6.23476 6.27638 6.38668 6.48186 6.64719 6.67457 6.80004 7.00815 7.03981 7.55480 7.99432 8.36136 8.96964 9.75131 10.12784 11.24235 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.041725 B = 0.005988 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.897291 B = 4674.878448 C = 4842.537663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.065 3.935 4 C 0.062 3.938 5 O -0.378 6.378 6 C 0.098 3.902 7 C -0.152 4.152 8 C 0.128 3.872 9 N -0.606 5.606 10 C -0.260 4.260 11 H 0.086 0.914 12 C 0.023 3.977 13 N -0.908 5.908 14 Si 0.882 3.118 15 H -0.288 1.288 16 H -0.303 1.303 17 H -0.271 1.271 18 C 0.151 3.849 19 C -0.129 4.129 20 H 0.085 0.915 21 H 0.037 0.963 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.023 0.977 32 H 0.262 0.738 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.636 11.485 6.336 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C -0.012 4.012 4 C -0.015 4.015 5 O -0.298 6.298 6 C 0.041 3.959 7 C -0.192 4.192 8 C 0.002 3.998 9 N -0.330 5.330 10 C -0.388 4.388 11 H 0.104 0.896 12 C -0.175 4.175 13 N -0.552 5.552 14 Si 0.713 3.287 15 H -0.216 1.216 16 H -0.231 1.231 17 H -0.196 1.196 18 C 0.025 3.975 19 C -0.168 4.168 20 H 0.104 0.896 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.522 11.109 6.177 19.299 hybrid contribution 0.269 0.459 1.310 1.414 sum -14.253 11.568 7.487 19.825 Atomic orbital electron populations 1.22731 0.81440 1.02776 0.99607 1.88015 1.19259 1.27345 1.95293 1.22572 0.92867 0.85369 1.00411 1.22472 0.92820 0.97219 0.88971 1.87977 1.23284 1.81728 1.36786 1.22094 0.79768 0.96509 0.97569 1.22520 0.98865 0.97928 0.99863 1.21319 0.91502 1.00083 0.86916 1.44389 1.59540 1.18647 1.10433 1.18943 1.16609 1.09992 0.93258 0.89615 1.25273 0.97915 0.96599 0.97760 1.69844 1.36964 1.09863 1.38483 0.86952 0.77071 0.79042 0.85659 1.21620 1.23119 1.19620 1.20913 0.90658 0.88369 0.97572 1.22134 0.98773 1.01579 0.94323 0.89648 0.94418 0.94131 0.92259 0.92564 0.92680 0.92203 0.93091 0.90834 0.92836 0.90719 0.95873 0.92783 0.95974 0.91286 0.92233 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.17 10.67 -40.08 -0.43 -5.60 16 3 C 0.06 0.73 6.32 37.16 0.23 0.96 16 4 C 0.06 0.81 6.13 37.16 0.23 1.03 16 5 O -0.38 -6.34 9.95 -40.08 -0.40 -6.74 16 6 C 0.10 1.70 2.57 -26.67 -0.07 1.64 16 7 C -0.15 -2.97 5.70 -26.59 -0.15 -3.12 16 8 C 0.13 2.90 4.20 -3.71 -0.02 2.88 16 9 N -0.61 -14.87 2.77 -172.32 -0.48 -15.34 16 10 C -0.26 -7.43 10.03 -15.06 -0.15 -7.58 16 11 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 12 C 0.02 0.69 5.23 -17.43 -0.09 0.59 16 13 N -0.91 -28.32 13.97 55.49 0.78 -27.54 16 14 Si 0.88 22.76 24.34 -169.99 -4.14 18.62 16 15 H -0.29 -7.20 6.62 56.52 0.37 -6.83 16 16 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 17 H -0.27 -6.84 6.64 56.52 0.38 -6.46 16 18 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 19 C -0.13 -2.29 5.73 -26.61 -0.15 -2.44 16 20 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 22 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.73 7.84 -51.93 -0.41 0.32 16 26 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.05 0.83 7.79 -51.93 -0.40 0.42 16 28 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 29 H 0.05 0.94 7.84 -51.93 -0.41 0.54 16 30 H 0.07 1.85 4.50 -51.93 -0.23 1.62 16 31 H 0.02 0.51 7.07 -51.93 -0.37 0.15 16 32 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 286.19 15.07 4.31 4.31 Total: -1.00 -32.50 286.19 -5.50 -38.00 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -6.07 Total: -4.09 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 0.92 Total: -1.62 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.30 Total: -42.89 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.83 Total: -12.34 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.14 Total: 18.62 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.50 -5.50 -38.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115821839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.888 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds