Wall clock time and date at job start Sun Mar 29 2020 21:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86806 * 119.99789 * 2 1 4 4 H 1.48494 * 109.47254 * 270.00129 * 3 2 1 5 5 H 1.48498 * 109.46929 * 30.00403 * 3 2 1 6 6 H 1.48504 * 109.46617 * 150.00464 * 3 2 1 7 7 C 1.38640 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99650 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00231 * 359.97438 * 7 2 1 10 10 C 1.35622 * 117.00024 * 185.06840 * 9 7 2 11 11 C 1.38748 * 120.14939 * 354.39537 * 10 9 7 12 12 C 1.38104 * 120.07031 * 180.02562 * 11 10 9 13 13 C 1.38498 * 120.37015 * 359.97438 * 12 11 10 14 14 C 1.37929 * 120.29957 * 359.69558 * 13 12 11 15 15 C 1.39518 * 119.92444 * 0.58281 * 14 13 12 16 16 C 1.47749 * 120.18566 * 179.71666 * 15 14 13 17 17 N 1.31514 * 125.84351 * 179.74662 * 16 15 14 18 18 C 1.33808 * 109.25803 * 180.02562 * 17 16 15 19 19 C 1.34862 * 108.39917 * 359.97438 * 18 17 16 20 20 N 1.36472 * 125.84320 * 359.75240 * 16 15 14 21 21 H 0.97003 * 126.50036 * 359.97418 * 20 16 15 22 22 H 0.96993 * 120.00063 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.96537 * 359.97438 * 11 10 9 24 24 H 1.07996 * 119.81462 * 179.97438 * 12 11 10 25 25 H 1.08001 * 119.85095 * 180.02562 * 13 12 11 26 26 H 1.08008 * 120.03705 * 180.30154 * 14 13 12 27 27 H 1.07996 * 125.79903 * 179.97438 * 18 17 16 28 28 H 1.07993 * 126.48378 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0694 -3.5032 0.1057 11 6 3.4554 -3.4402 0.0912 12 6 4.2018 -4.5971 0.1989 13 6 3.5750 -5.8259 0.3225 14 6 2.1982 -5.9056 0.3454 15 6 1.4319 -4.7453 0.2316 16 6 -0.0434 -4.8246 0.2492 17 7 -0.8705 -3.8064 0.1551 18 6 -2.1301 -4.2548 0.2079 19 6 -2.0992 -5.5967 0.3389 20 7 -0.7809 -5.9669 0.3661 21 1 -0.4367 -6.8697 0.4519 22 1 -0.4850 0.8400 0.0004 23 1 3.9510 -2.4855 -0.0053 24 1 5.2804 -4.5434 0.1868 25 1 4.1669 -6.7253 0.4066 26 1 1.7138 -6.8656 0.4468 27 1 -3.0203 -3.6456 0.1548 28 1 -2.9525 -6.2549 0.4089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000146588571.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:45 Heat of formation + Delta-G solvation = 65.116838 kcal Electronic energy + Delta-G solvation = -15252.287729 eV Core-core repulsion = 12656.447542 eV Total energy + Delta-G solvation = -2595.840188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.14181 -38.80216 -36.30142 -32.28763 -31.81394 -31.17566 -29.01735 -27.47856 -25.29215 -22.62746 -21.64355 -20.51526 -19.69877 -18.02747 -17.83089 -16.40706 -14.80026 -14.54100 -14.38288 -14.34791 -13.75477 -13.36693 -13.18944 -12.99414 -12.67592 -12.33652 -11.63112 -11.36168 -10.87488 -10.84390 -10.72182 -10.40798 -9.34414 -9.33023 -8.95012 -8.86504 -8.72139 -7.64956 -6.88492 -6.34442 -3.92585 1.72447 2.36745 2.90955 3.17260 3.18076 3.22508 3.64292 4.00252 4.01976 4.69615 5.13299 5.16855 5.25546 5.47252 5.61030 5.77015 5.94494 5.98625 6.14198 6.32561 6.59231 6.67087 6.78132 7.05418 7.11794 7.33347 7.37363 7.46773 7.76066 7.97219 8.05228 8.96104 9.05515 9.79147 10.78853 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.010299 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.944981 B = 2718.043422 C = 3944.435021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.045 3.955 3 Si 0.937 3.063 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.401 4.401 8 H 0.091 0.909 9 O -0.120 6.120 10 C 0.176 3.824 11 C -0.235 4.235 12 C -0.062 4.062 13 C -0.222 4.222 14 C -0.061 4.061 15 C -0.112 4.112 16 C 0.270 3.730 17 N -0.432 5.432 18 C -0.023 4.023 19 C -0.083 4.083 20 N -0.580 5.580 21 H 0.409 0.591 22 H 0.269 0.731 23 H 0.131 0.869 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.162 0.838 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 -9.425 0.775 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.477 4.477 8 H 0.108 0.892 9 O -0.018 6.018 10 C 0.117 3.883 11 C -0.254 4.254 12 C -0.081 4.081 13 C -0.242 4.242 14 C -0.081 4.081 15 C -0.115 4.115 16 C 0.010 3.990 17 N -0.150 5.150 18 C -0.174 4.174 19 C -0.216 4.216 20 N -0.185 5.185 21 H 0.246 0.754 22 H 0.079 0.921 23 H 0.149 0.851 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.123 0.877 27 H 0.179 0.821 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.123 -8.273 0.666 8.375 hybrid contribution 0.300 -0.563 0.134 0.652 sum 1.423 -8.836 0.800 8.986 Atomic orbital electron populations 1.70155 1.05759 1.27322 1.42925 1.25310 0.95778 0.98699 0.96440 0.85784 0.79013 0.80357 0.78665 1.19910 1.20271 1.19211 1.21437 0.91788 0.81328 1.53186 0.89158 1.84221 1.32966 1.10618 1.73979 1.19169 0.89785 0.87511 0.91877 1.21114 0.93325 0.99256 1.11720 1.20829 0.98562 0.92292 0.96439 1.20363 0.93689 0.97126 1.12992 1.20483 0.93890 0.95061 0.98675 1.16637 0.86137 0.92140 1.16626 1.21499 0.92725 0.80698 1.04062 1.71005 0.99611 1.27421 1.16924 1.22427 0.96269 0.91834 1.06840 1.22556 0.86020 0.98012 1.15007 1.43512 1.06650 1.09764 1.58570 0.75393 0.92137 0.85115 0.87307 0.87395 0.87728 0.82055 0.81489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.63 13.67 55.48 0.76 -23.87 15 2 C 0.05 1.25 5.49 -17.52 -0.10 1.16 15 3 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 15 4 H -0.27 -5.87 7.11 56.52 0.40 -5.46 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.58 15 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 7 C -0.40 -11.32 9.49 30.88 0.29 -11.03 15 8 H 0.09 2.33 5.21 -52.48 -0.27 2.06 15 9 O -0.12 -3.49 8.06 0.52 0.00 -3.48 15 10 C 0.18 4.40 6.66 -38.66 -0.26 4.14 15 11 C -0.23 -5.12 9.16 -39.44 -0.36 -5.48 15 12 C -0.06 -1.13 10.03 -39.53 -0.40 -1.52 15 13 C -0.22 -3.77 10.03 -39.60 -0.40 -4.17 15 14 C -0.06 -1.09 9.69 -39.22 -0.38 -1.47 15 15 C -0.11 -2.47 5.89 -104.80 -0.62 -3.09 15 16 C 0.27 5.97 7.76 -154.63 -1.20 4.77 15 17 N -0.43 -10.83 9.71 -11.23 -0.11 -10.93 15 18 C -0.02 -0.46 11.84 -17.89 -0.21 -0.68 15 19 C -0.08 -1.34 12.03 -16.46 -0.20 -1.53 15 20 N -0.58 -9.72 6.08 -10.55 -0.06 -9.78 15 21 H 0.41 5.17 8.09 -40.82 -0.33 4.84 15 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 23 H 0.13 2.81 5.64 -52.49 -0.30 2.52 15 24 H 0.11 1.62 8.06 -52.49 -0.42 1.20 15 25 H 0.11 1.49 8.06 -52.49 -0.42 1.06 15 26 H 0.10 1.47 7.18 -52.48 -0.38 1.10 15 27 H 0.16 2.88 8.06 -52.49 -0.42 2.46 15 28 H 0.17 1.90 8.06 -52.49 -0.42 1.48 15 LS Contribution 253.11 15.07 3.81 3.81 Total: -1.00 -33.65 253.11 -6.54 -40.20 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -2.10 Total: 7.39 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -3.82 Total: -18.90 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.59 Total: -44.59 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: 0.00 Total: -3.48 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.65 -6.54 -40.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146588571.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.313 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds