Wall clock time and date at job start Sun Mar 29 2020 21:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86806 * 119.99789 * 2 1 4 4 H 1.48494 * 109.47254 * 270.00129 * 3 2 1 5 5 H 1.48498 * 109.46929 * 30.00403 * 3 2 1 6 6 H 1.48504 * 109.46617 * 150.00464 * 3 2 1 7 7 C 1.38640 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99650 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00231 * 359.97438 * 7 2 1 10 10 C 1.35622 * 117.00024 * 185.06840 * 9 7 2 11 11 C 1.38748 * 120.14939 * 354.39537 * 10 9 7 12 12 C 1.38104 * 120.07031 * 180.02562 * 11 10 9 13 13 C 1.38498 * 120.37015 * 359.97438 * 12 11 10 14 14 C 1.37929 * 120.29957 * 359.69558 * 13 12 11 15 15 C 1.39518 * 119.92444 * 0.58281 * 14 13 12 16 16 C 1.47749 * 120.18566 * 179.71666 * 15 14 13 17 17 N 1.31514 * 125.84351 * 179.74662 * 16 15 14 18 18 C 1.33808 * 109.25803 * 180.02562 * 17 16 15 19 19 C 1.34862 * 108.39917 * 359.97438 * 18 17 16 20 20 N 1.36472 * 125.84320 * 359.75240 * 16 15 14 21 21 H 0.97003 * 126.50036 * 359.97418 * 20 16 15 22 22 H 0.96993 * 120.00063 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.96537 * 359.97438 * 11 10 9 24 24 H 1.07996 * 119.81462 * 179.97438 * 12 11 10 25 25 H 1.08001 * 119.85095 * 180.02562 * 13 12 11 26 26 H 1.08008 * 120.03705 * 180.30154 * 14 13 12 27 27 H 1.07996 * 125.79903 * 179.97438 * 18 17 16 28 28 H 1.07993 * 126.48378 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0694 -3.5032 0.1057 11 6 3.4554 -3.4402 0.0912 12 6 4.2018 -4.5971 0.1989 13 6 3.5750 -5.8259 0.3225 14 6 2.1982 -5.9056 0.3454 15 6 1.4319 -4.7453 0.2316 16 6 -0.0434 -4.8246 0.2492 17 7 -0.8705 -3.8064 0.1551 18 6 -2.1301 -4.2548 0.2079 19 6 -2.0992 -5.5967 0.3389 20 7 -0.7809 -5.9669 0.3661 21 1 -0.4367 -6.8697 0.4519 22 1 -0.4850 0.8400 0.0004 23 1 3.9510 -2.4855 -0.0053 24 1 5.2804 -4.5434 0.1868 25 1 4.1669 -6.7253 0.4066 26 1 1.7138 -6.8656 0.4468 27 1 -3.0203 -3.6456 0.1548 28 1 -2.9525 -6.2549 0.4089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000146588571.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:45 Heat of formation + Delta-G solvation = 41.492851 kcal Electronic energy + Delta-G solvation = -15253.312142 eV Core-core repulsion = 12656.447542 eV Total energy + Delta-G solvation = -2596.864601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.64689 -40.50239 -37.99485 -34.23651 -33.36353 -32.73679 -30.61886 -29.01666 -27.25317 -24.17422 -23.28708 -22.03890 -21.24359 -19.74196 -19.46416 -18.12713 -16.42103 -16.20341 -16.04286 -15.93851 -15.31018 -15.14065 -14.69375 -14.49973 -14.21425 -13.98035 -13.46501 -13.03083 -12.52370 -12.43639 -12.24824 -12.08747 -11.15646 -10.90166 -10.73771 -10.51116 -10.31736 -9.23214 -8.50973 -8.33281 -6.01554 0.19160 0.77487 1.36270 1.45163 1.47201 1.53844 2.21751 2.28595 2.43835 2.96288 3.30671 3.56010 3.71430 4.06341 4.28915 4.40963 4.52244 4.56244 4.66046 4.83375 5.02187 5.14890 5.17851 5.27035 5.58737 5.69489 5.76941 5.97880 6.07132 6.22503 6.69058 7.05755 7.47328 7.93476 8.85798 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.010299 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.944981 B = 2718.043422 C = 3944.435021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.019 4.019 3 Si 1.015 2.985 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.426 4.426 8 H 0.099 0.901 9 O -0.177 6.177 10 C 0.132 3.868 11 C -0.253 4.253 12 C -0.059 4.059 13 C -0.193 4.193 14 C -0.058 4.058 15 C -0.125 4.125 16 C 0.234 3.766 17 N -0.500 5.500 18 C -0.078 4.078 19 C -0.028 4.028 20 N -0.556 5.556 21 H 0.433 0.567 22 H 0.267 0.733 23 H 0.121 0.879 24 H 0.149 0.851 25 H 0.160 0.840 26 H 0.152 0.848 27 H 0.167 0.833 28 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -13.097 1.183 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.218 4.218 3 Si 0.835 3.165 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.502 4.502 8 H 0.117 0.883 9 O -0.079 6.079 10 C 0.077 3.923 11 C -0.272 4.272 12 C -0.078 4.078 13 C -0.212 4.212 14 C -0.077 4.077 15 C -0.128 4.128 16 C -0.026 4.026 17 N -0.219 5.219 18 C -0.227 4.227 19 C -0.163 4.163 20 N -0.163 5.163 21 H 0.274 0.726 22 H 0.076 0.924 23 H 0.138 0.862 24 H 0.167 0.833 25 H 0.177 0.823 26 H 0.169 0.831 27 H 0.184 0.816 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.788 -12.037 1.079 12.403 hybrid contribution -0.139 0.092 0.037 0.171 sum 2.649 -11.946 1.116 12.286 Atomic orbital electron populations 1.70339 1.07872 1.28030 1.46859 1.26562 0.96747 1.02554 0.95960 0.84647 0.77851 0.74928 0.79071 1.18972 1.19843 1.17641 1.21917 0.92433 0.82227 1.53630 0.88329 1.84226 1.34182 1.11499 1.77999 1.19947 0.91423 0.87865 0.93096 1.21260 0.92533 1.00689 1.12749 1.21310 1.00482 0.91374 0.94587 1.21055 0.93689 0.98330 1.08108 1.21038 0.94433 0.95345 0.96907 1.17187 0.87052 0.92597 1.15998 1.21439 0.92884 0.81913 1.06355 1.70866 1.02103 1.30582 1.18318 1.22795 0.95306 0.94353 1.10234 1.23310 0.86928 0.96968 1.09081 1.43390 1.06372 1.09730 1.56782 0.72592 0.92371 0.86158 0.83323 0.82254 0.83076 0.81615 0.75530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.55 13.67 21.61 0.30 -57.26 15 2 C -0.02 -1.10 5.49 84.83 0.47 -0.63 15 3 Si 1.02 44.63 29.55 68.60 2.03 46.66 15 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 15 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 6 H -0.25 -10.27 7.11 99.48 0.71 -9.57 15 7 C -0.43 -25.81 9.49 67.92 0.64 -25.16 15 8 H 0.10 5.45 5.21 -2.91 -0.02 5.44 15 9 O -0.18 -11.10 8.06 -21.05 -0.17 -11.27 15 10 C 0.13 6.87 6.66 22.86 0.15 7.03 15 11 C -0.25 -11.14 9.16 22.36 0.20 -10.94 15 12 C -0.06 -1.94 10.03 22.30 0.22 -1.71 15 13 C -0.19 -5.50 10.03 22.26 0.22 -5.27 15 14 C -0.06 -1.83 9.69 22.51 0.22 -1.61 15 15 C -0.12 -5.51 5.89 -19.98 -0.12 -5.63 15 16 C 0.23 10.42 7.76 136.47 1.06 11.48 15 17 N -0.50 -26.34 9.71 -189.44 -1.84 -28.18 15 18 C -0.08 -3.21 11.84 83.62 0.99 -2.22 15 19 C -0.03 -0.82 12.03 83.12 1.00 0.18 15 20 N -0.56 -17.03 6.08 -187.28 -1.14 -18.17 15 21 H 0.43 8.83 8.09 -92.71 -0.75 8.08 15 22 H 0.27 15.81 8.31 -92.71 -0.77 15.04 15 23 H 0.12 5.40 5.64 -2.91 -0.02 5.38 15 24 H 0.15 3.69 8.06 -2.91 -0.02 3.67 15 25 H 0.16 3.06 8.06 -2.91 -0.02 3.03 15 26 H 0.15 3.31 7.18 -2.91 -0.02 3.29 15 27 H 0.17 6.25 8.06 -2.91 -0.02 6.23 15 28 H 0.23 3.81 8.06 -2.91 -0.02 3.78 15 Total: -1.00 -84.30 253.11 4.69 -79.61 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.45 Total: 23.09 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 5.06 Total: -34.49 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -2.68 Total: -103.60 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.17 Total: -11.27 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -84.30 4.69 -79.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146588571.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.103 kcal (2) G-P(sol) polarization free energy of solvation -84.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds