Wall clock time and date at job start Sun Mar 29 2020 21:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38732 * 119.76191 * 2 1 4 4 Cl 1.73595 * 119.88239 * 359.97438 * 3 2 1 5 5 C 1.37747 * 120.23423 * 179.71850 * 3 2 1 6 6 C 1.40695 * 119.75800 * 0.52306 * 5 3 2 7 7 C 1.41403 * 120.22975 * 179.76821 * 6 5 3 8 8 H 1.07998 * 120.00062 * 24.39314 * 7 6 5 9 9 C 1.39943 * 120.00069 * 204.38666 * 7 6 5 10 10 N 1.30826 * 119.99709 * 17.86680 * 9 7 6 11 11 Si 1.86797 * 120.00177 * 197.86771 * 9 7 6 12 12 H 1.48499 * 109.47372 * 90.00126 * 11 9 7 13 13 H 1.48497 * 109.47154 * 210.00379 * 11 9 7 14 14 H 1.48498 * 109.46861 * 329.99970 * 11 9 7 15 15 C 1.40706 * 119.53914 * 359.74919 * 6 5 3 16 16 C 1.37739 * 119.75614 * 359.97438 * 15 6 5 17 17 Cl 1.73602 * 119.87847 * 179.97438 * 16 15 6 18 18 H 1.08994 * 109.47120 * 269.72878 * 1 2 3 19 19 H 1.09009 * 109.46661 * 149.73006 * 1 2 3 20 20 H 1.08994 * 109.46845 * 29.73491 * 1 2 3 21 21 H 1.08000 * 120.11610 * 180.27351 * 5 3 2 22 22 H 0.97007 * 120.00035 * 179.97438 * 10 9 7 23 23 H 1.08005 * 120.11894 * 180.02562 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2043 0.0000 4 17 1.3184 2.7023 -0.0007 5 6 3.5731 1.2157 0.0058 6 6 4.2815 0.0001 0.0007 7 6 5.6955 0.0002 0.0017 8 1 6.2352 0.8502 0.3923 9 6 6.3956 -1.1013 -0.5034 10 7 5.7893 -1.9612 -1.2809 11 14 8.1957 -1.3437 -0.0673 12 1 8.3000 -2.1591 1.1694 13 1 8.8849 -2.0435 -1.1811 14 1 8.8333 -0.0214 0.1563 15 6 3.5731 -1.2156 -0.0051 16 6 2.1957 -1.2042 -0.0050 17 17 1.3185 -2.7023 -0.0128 18 1 -0.3633 -0.0049 1.0276 19 1 -0.3633 -0.8877 -0.5181 20 1 -0.3633 0.8923 -0.5097 21 1 4.1072 2.1543 0.0103 22 1 6.2747 -2.7245 -1.6313 23 1 4.1074 -2.1542 -0.0086 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205211253.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:12 Heat of formation + Delta-G solvation = -17.440499 kcal Electronic energy + Delta-G solvation = -11565.793087 eV Core-core repulsion = 9236.523414 eV Total energy + Delta-G solvation = -2329.269673 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.996 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.09727 -35.77883 -35.42718 -33.94203 -31.35423 -29.17550 -27.61095 -24.02447 -21.41303 -20.38354 -17.70164 -15.69865 -14.79366 -14.56458 -14.17940 -13.38090 -13.14458 -12.84013 -11.84793 -11.73466 -11.53252 -11.42001 -11.26580 -11.11309 -10.86606 -10.51487 -10.11251 -10.03580 -9.87915 -9.67999 -9.24930 -7.58865 -7.49543 -6.99339 -4.61521 2.42334 2.50430 2.86455 2.97119 3.01038 3.01459 3.39392 3.78061 4.28807 5.28329 5.93189 5.98432 6.33600 6.39532 6.60848 6.75840 6.78354 6.94644 6.99489 7.34926 7.53497 7.63533 7.83339 8.25143 8.54978 8.59237 9.94362 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.026907 B = 0.009957 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.365381 B = 2811.503033 C = 3766.246259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.206 4.206 3 C 0.019 3.981 4 Cl -0.111 7.111 5 C -0.214 4.214 6 C 0.122 3.878 7 C -0.449 4.449 8 H 0.086 0.914 9 C 0.075 3.925 10 N -0.781 5.781 11 Si 0.914 3.086 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.260 1.260 15 C -0.152 4.152 16 C 0.008 3.992 17 Cl -0.110 7.110 18 H 0.050 0.950 19 H 0.056 0.944 20 H 0.056 0.944 21 H 0.110 0.890 22 H 0.286 0.714 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 0.802 1.525 3.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.209 4.209 3 C -0.008 4.008 4 Cl -0.083 7.083 5 C -0.234 4.234 6 C 0.119 3.881 7 C -0.478 4.478 8 H 0.104 0.896 9 C -0.145 4.145 10 N -0.405 5.405 11 Si 0.738 3.262 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.184 1.184 15 C -0.172 4.172 16 C -0.018 4.018 17 Cl -0.082 7.082 18 H 0.069 0.931 19 H 0.075 0.925 20 H 0.075 0.925 21 H 0.128 0.872 22 H 0.098 0.902 23 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.088 0.586 1.365 3.426 hybrid contribution 0.668 -0.187 0.050 0.696 sum -2.419 0.399 1.415 2.831 Atomic orbital electron populations 1.20505 0.92042 1.01598 1.00763 1.18684 0.95093 0.89906 1.17207 1.20217 0.91493 0.83853 1.05211 1.98257 1.77620 1.35127 1.97292 1.20947 0.90691 0.98379 1.13418 1.17359 0.93392 0.89319 0.88077 1.19608 0.90733 1.02453 1.34984 0.89576 1.25995 1.01533 0.94627 0.92395 1.69795 1.39127 1.10682 1.20869 0.86194 0.80981 0.79784 0.79218 1.18999 1.20074 1.18370 1.21356 0.89952 1.00129 1.05785 1.20354 0.91901 0.83840 1.05750 1.98255 1.77474 1.35134 1.97288 0.93119 0.92469 0.92539 0.87213 0.90248 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.21 36.01 0.33 -1.37 14 2 C -0.21 -4.51 5.91 -104.26 -0.62 -5.13 14 3 C 0.02 0.41 6.30 -39.58 -0.25 0.16 14 4 Cl -0.11 -2.09 27.25 -51.86 -1.41 -3.50 14 5 C -0.21 -5.02 9.57 -38.83 -0.37 -5.39 14 6 C 0.12 3.07 5.57 -106.83 -0.60 2.47 14 7 C -0.45 -11.10 9.05 -37.74 -0.34 -11.45 14 8 H 0.09 2.03 7.91 -52.49 -0.42 1.61 14 9 C 0.07 1.75 5.14 -17.34 -0.09 1.66 14 10 N -0.78 -19.00 10.95 55.55 0.61 -18.39 14 11 Si 0.91 17.51 29.60 -169.99 -5.03 12.48 14 12 H -0.27 -5.04 7.11 56.52 0.40 -4.64 14 13 H -0.28 -5.18 7.11 56.52 0.40 -4.78 14 14 H -0.26 -4.92 7.11 56.52 0.40 -4.52 14 15 C -0.15 -3.77 8.47 -38.83 -0.33 -4.10 14 16 C 0.01 0.19 6.30 -39.58 -0.25 -0.06 14 17 Cl -0.11 -2.19 27.26 -51.86 -1.41 -3.60 14 18 H 0.05 0.88 8.14 -51.93 -0.42 0.46 14 19 H 0.06 1.01 6.88 -51.92 -0.36 0.65 14 20 H 0.06 0.98 6.86 -51.93 -0.36 0.63 14 21 H 0.11 2.43 8.06 -52.49 -0.42 2.01 14 22 H 0.29 6.32 8.30 -40.82 -0.34 5.98 14 23 H 0.13 3.44 6.16 -52.48 -0.32 3.12 14 LS Contribution 234.20 15.07 3.53 3.53 Total: -1.00 -24.51 234.20 -7.66 -32.17 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -1.43 Total: 0.52 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -2.51 Total: -23.20 kcal Atomic # 7 Polarization: -19.00 SS G_CDS: 0.61 Total: -18.39 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 17 Polarization: -4.28 SS G_CDS: -2.83 Total: -7.10 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -24.51 -7.66 -32.17 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205211253.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.730 kcal (2) G-P(sol) polarization free energy of solvation -24.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds