Wall clock time and date at job start Sun Mar 29 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99787 * 2 1 4 4 H 1.48495 * 109.47490 * 269.99696 * 3 2 1 5 5 H 1.48496 * 109.47329 * 30.00178 * 3 2 1 6 6 H 1.48505 * 109.46922 * 150.00052 * 3 2 1 7 7 C 1.37879 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00285 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99517 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.46776 * 180.02562 * 9 7 2 11 11 C 1.38272 * 119.95181 * 265.23265 * 10 9 7 12 12 C 1.38211 * 120.06248 * 180.27723 * 11 10 9 13 13 Cl 1.73605 * 120.01025 * 179.72509 * 12 11 10 14 14 C 1.38862 * 119.97937 * 359.74242 * 12 11 10 15 15 O 1.35920 * 120.04886 * 180.02562 * 14 12 11 16 16 C 1.38636 * 119.90392 * 0.02562 * 14 12 11 17 17 C 1.38402 * 119.93428 * 359.97438 * 16 14 12 18 18 F 1.35104 * 119.98874 * 179.97438 * 17 16 14 19 19 H 0.96989 * 119.99837 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47215 * 60.00211 * 9 7 2 21 21 H 1.08996 * 109.47237 * 299.99592 * 9 7 2 22 22 H 1.08001 * 119.96680 * 0.04825 * 11 10 9 23 23 H 0.96693 * 114.00180 * 269.98157 * 15 14 12 24 24 H 1.08001 * 120.03405 * 180.02562 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2305 -3.6446 -0.0015 11 6 2.6043 -4.2335 -1.1953 12 6 3.4979 -5.2878 -1.1973 13 17 3.9609 -6.0308 -2.6965 14 6 4.0250 -5.7529 0.0003 15 8 4.9043 -6.7894 -0.0001 16 6 3.6531 -5.1585 1.1962 17 6 2.7580 -4.1029 1.1938 18 9 2.3943 -3.5232 2.3587 19 1 -0.4849 0.8400 -0.0004 20 1 0.6248 -2.5563 -0.8919 21 1 0.6242 -2.5575 0.8880 22 1 2.1948 -3.8716 -2.1269 23 1 4.4876 -7.6587 0.0744 24 1 4.0621 -5.5183 2.1288 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214996022.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:51 Heat of formation + Delta-G solvation = -83.281844 kcal Electronic energy + Delta-G solvation = -13422.533690 eV Core-core repulsion = 10662.072547 eV Total energy + Delta-G solvation = -2760.461143 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.025 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.30317 -39.43172 -36.68842 -36.21931 -33.29243 -30.94538 -30.00077 -26.81774 -23.50073 -22.61085 -20.93604 -18.53308 -16.60647 -16.53112 -16.08444 -15.75975 -15.03218 -14.59406 -14.16978 -13.57428 -13.34789 -12.68723 -12.43361 -12.20071 -11.58818 -11.25698 -11.07567 -10.87432 -10.67274 -10.61590 -10.48773 -9.75860 -9.57757 -8.53210 -8.50126 -7.92168 -6.12337 -4.17136 1.29344 1.40893 2.32140 3.27566 3.33808 3.38155 3.71044 4.10456 4.39427 4.85556 4.97554 5.23513 5.42886 5.56841 5.85038 5.99362 6.31017 6.50932 6.56614 7.05777 7.37935 7.50175 7.62928 7.81699 8.16258 8.86219 9.47364 10.97671 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.032675 B = 0.007658 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.731578 B = 3655.343310 C = 4083.817476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.050 3.950 10 C -0.062 4.062 11 C -0.076 4.076 12 C -0.070 4.070 13 Cl -0.070 7.070 14 C 0.111 3.889 15 O -0.486 6.486 16 C -0.173 4.173 17 C 0.117 3.883 18 F -0.126 7.126 19 H 0.264 0.736 20 H 0.037 0.963 21 H 0.038 0.962 22 H 0.144 0.856 23 H 0.386 0.614 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 -11.879 -0.930 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.013 3.987 10 C -0.064 4.064 11 C -0.094 4.094 12 C -0.098 4.098 13 Cl -0.041 7.041 14 C 0.065 3.935 15 O -0.295 6.295 16 C -0.193 4.193 17 C 0.097 3.903 18 F -0.104 7.104 19 H 0.073 0.927 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.162 0.838 23 H 0.242 0.758 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.579 -11.360 -1.063 12.701 hybrid contribution 0.145 0.579 0.135 0.612 sum 5.725 -10.781 -0.928 12.242 Atomic orbital electron populations 1.69942 1.06045 1.27075 1.49916 1.24981 0.94913 0.99325 0.94824 0.86491 0.79865 0.82880 0.78259 1.20456 1.21023 1.19726 1.20973 0.93026 0.89564 1.51903 0.92379 1.18361 0.92225 0.88760 0.99338 1.20842 0.98398 0.97098 0.90017 1.20827 0.95992 0.93486 0.99139 1.21346 1.01764 1.00026 0.86614 1.98334 1.91701 1.81867 1.32183 1.17577 0.93292 0.92622 0.89962 1.84862 1.32780 1.16041 1.95811 1.21175 1.00496 0.99026 0.98601 1.17412 0.97088 0.93544 0.82242 1.91515 1.90045 1.83185 1.45654 0.92655 0.94440 0.94378 0.83802 0.75833 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 14 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 14 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 14 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 14 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 14 7 C -0.52 -14.23 9.09 -34.44 -0.31 -14.54 14 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 14 9 C 0.05 1.24 4.87 -29.03 -0.14 1.10 14 10 C -0.06 -1.30 5.08 -104.53 -0.53 -1.83 14 11 C -0.08 -1.38 9.46 -39.58 -0.37 -1.75 14 12 C -0.07 -1.14 6.33 -39.36 -0.25 -1.39 14 13 Cl -0.07 -1.00 28.50 -51.86 -1.48 -2.47 14 14 C 0.11 1.70 6.70 -39.20 -0.26 1.44 14 15 O -0.49 -6.23 12.96 -19.49 -0.25 -6.49 14 16 C -0.17 -2.78 9.96 -39.37 -0.39 -3.18 14 17 C 0.12 2.27 7.24 -39.44 -0.29 1.98 14 18 F -0.13 -2.62 16.56 2.25 0.04 -2.58 14 19 H 0.26 7.22 8.31 -40.82 -0.34 6.88 14 20 H 0.04 0.95 8.05 -51.93 -0.42 0.53 14 21 H 0.04 1.01 7.78 -51.93 -0.40 0.61 14 22 H 0.14 2.50 8.06 -52.49 -0.42 2.08 14 23 H 0.39 3.05 9.06 45.56 0.41 3.46 14 24 H 0.14 1.92 8.06 -52.49 -0.42 1.49 14 LS Contribution 243.42 15.07 3.67 3.67 Total: -1.00 -29.62 243.42 -5.75 -35.38 By element: Atomic # 1 Polarization: -1.41 SS G_CDS: -0.80 Total: -2.21 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -2.65 Total: -16.54 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.74 Total: -25.12 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.25 Total: -6.49 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.48 Total: -2.47 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.62 -5.75 -35.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214996022.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.907 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds