Wall clock time and date at job start Sun Mar 29 2020 21:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99787 * 2 1 4 4 H 1.48495 * 109.47490 * 269.99696 * 3 2 1 5 5 H 1.48496 * 109.47329 * 30.00178 * 3 2 1 6 6 H 1.48505 * 109.46922 * 150.00052 * 3 2 1 7 7 C 1.37879 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00285 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99517 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.46776 * 180.02562 * 9 7 2 11 11 C 1.38272 * 119.95181 * 265.23265 * 10 9 7 12 12 C 1.38211 * 120.06248 * 180.27723 * 11 10 9 13 13 Cl 1.73605 * 120.01025 * 179.72509 * 12 11 10 14 14 C 1.38862 * 119.97937 * 359.74242 * 12 11 10 15 15 O 1.35920 * 120.04886 * 180.02562 * 14 12 11 16 16 C 1.38636 * 119.90392 * 0.02562 * 14 12 11 17 17 C 1.38402 * 119.93428 * 359.97438 * 16 14 12 18 18 F 1.35104 * 119.98874 * 179.97438 * 17 16 14 19 19 H 0.96989 * 119.99837 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47215 * 60.00211 * 9 7 2 21 21 H 1.08996 * 109.47237 * 299.99592 * 9 7 2 22 22 H 1.08001 * 119.96680 * 0.04825 * 11 10 9 23 23 H 0.96693 * 114.00180 * 269.98157 * 15 14 12 24 24 H 1.08001 * 120.03405 * 180.02562 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2305 -3.6446 -0.0015 11 6 2.6043 -4.2335 -1.1953 12 6 3.4979 -5.2878 -1.1973 13 17 3.9609 -6.0308 -2.6965 14 6 4.0250 -5.7529 0.0003 15 8 4.9043 -6.7894 -0.0001 16 6 3.6531 -5.1585 1.1962 17 6 2.7580 -4.1029 1.1938 18 9 2.3943 -3.5232 2.3587 19 1 -0.4849 0.8400 -0.0004 20 1 0.6248 -2.5563 -0.8919 21 1 0.6242 -2.5575 0.8880 22 1 2.1948 -3.8716 -2.1269 23 1 4.4876 -7.6587 0.0744 24 1 4.0621 -5.5183 2.1288 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214996022.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:51 Heat of formation + Delta-G solvation = -102.303348 kcal Electronic energy + Delta-G solvation = -13423.358524 eV Core-core repulsion = 10662.072547 eV Total energy + Delta-G solvation = -2761.285977 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.85532 -40.73429 -37.95238 -37.46580 -35.26445 -32.62342 -31.41973 -28.59042 -25.32493 -24.01266 -22.49343 -19.75819 -18.61220 -18.02064 -17.44086 -17.24628 -16.58841 -16.37232 -15.57741 -14.91564 -14.74094 -14.49054 -14.06603 -13.72717 -13.45571 -12.96255 -12.61573 -12.46774 -12.24501 -12.17884 -11.85026 -11.56217 -11.46709 -10.63401 -9.91504 -9.37998 -8.24020 -6.37113 -0.09403 0.06047 1.04941 1.39362 1.40150 1.51409 2.28573 2.43637 2.88129 3.07986 3.47475 3.68253 3.94825 4.18643 4.55975 4.64889 4.89765 5.02402 5.05757 5.25679 5.59152 5.64440 5.68235 6.08684 6.71750 6.73485 7.31522 8.85717 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.032675 B = 0.007658 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.731578 B = 3655.343310 C = 4083.817476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.059 3.941 10 C -0.093 4.093 11 C -0.075 4.075 12 C -0.071 4.071 13 Cl -0.047 7.047 14 C 0.136 3.864 15 O -0.483 6.483 16 C -0.160 4.160 17 C 0.099 3.901 18 F -0.142 7.142 19 H 0.267 0.733 20 H 0.020 0.980 21 H 0.008 0.992 22 H 0.144 0.856 23 H 0.414 0.586 24 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 -12.995 -1.195 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.094 4.094 12 C -0.099 4.099 13 Cl -0.018 7.018 14 C 0.090 3.910 15 O -0.296 6.296 16 C -0.179 4.179 17 C 0.079 3.921 18 F -0.120 7.120 19 H 0.076 0.924 20 H 0.038 0.962 21 H 0.026 0.974 22 H 0.162 0.838 23 H 0.274 0.726 24 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.528 -12.515 -1.334 14.666 hybrid contribution -0.396 0.748 0.167 0.863 sum 7.132 -11.767 -1.167 13.809 Atomic orbital electron populations 1.70056 1.07550 1.28102 1.50850 1.25867 0.95773 1.02984 0.94376 0.85468 0.78555 0.78505 0.78709 1.19374 1.20394 1.19291 1.21310 0.93032 0.91114 1.51608 0.92794 1.18031 0.92628 0.90169 0.96953 1.20464 0.99556 0.97450 0.91948 1.20752 0.96470 0.93998 0.98172 1.21362 1.01071 0.99359 0.88071 1.98345 1.91357 1.81229 1.30893 1.17535 0.91679 0.92614 0.89153 1.84806 1.32283 1.16945 1.95573 1.21364 0.98977 0.97318 1.00251 1.17628 0.98397 0.94825 0.81212 1.91468 1.90453 1.83746 1.46357 0.92412 0.96174 0.97387 0.83779 0.72586 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.29 21.45 0.28 -54.87 14 2 C 0.01 0.50 5.46 84.65 0.46 0.96 14 3 Si 0.96 44.16 29.54 68.60 2.03 46.18 14 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 14 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 14 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 14 7 C -0.53 -30.17 9.09 25.60 0.23 -29.93 14 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 14 9 C 0.06 3.09 4.87 29.10 0.14 3.23 14 10 C -0.09 -3.94 5.08 -19.80 -0.10 -4.04 14 11 C -0.08 -2.71 9.46 22.27 0.21 -2.49 14 12 C -0.07 -2.15 6.33 22.41 0.14 -2.01 14 13 Cl -0.05 -1.22 28.50 -2.72 -0.08 -1.30 14 14 C 0.14 3.73 6.70 22.51 0.15 3.88 14 15 O -0.48 -10.17 12.96 -92.65 -1.20 -11.37 14 16 C -0.16 -4.72 9.96 22.40 0.22 -4.50 14 17 C 0.10 3.82 7.24 22.36 0.16 3.98 14 18 F -0.14 -6.02 16.56 44.97 0.74 -5.28 14 19 H 0.27 14.90 8.31 -92.72 -0.77 14.13 14 20 H 0.02 1.08 8.05 -2.39 -0.02 1.06 14 21 H 0.01 0.45 7.78 -2.39 -0.02 0.43 14 22 H 0.14 5.04 8.06 -2.91 -0.02 5.02 14 23 H 0.41 4.41 9.06 -74.06 -0.67 3.74 14 24 H 0.17 3.99 8.06 -2.91 -0.02 3.97 14 Total: -1.00 -64.29 243.42 3.97 -60.31 By element: Atomic # 1 Polarization: -3.34 SS G_CDS: 0.57 Total: -2.76 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 1.62 Total: -30.92 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.28 Total: -54.87 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.20 Total: -11.37 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.74 Total: -5.28 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -64.29 3.97 -60.31 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214996022.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.990 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds