Wall clock time and date at job start Sun Mar 29 2020 21:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38338 * 119.98797 * 269.72177 * 10 9 7 12 12 F 1.35096 * 120.03962 * 359.97438 * 11 10 9 13 13 C 1.38902 * 119.91474 * 179.72928 * 11 10 9 14 14 O 1.35973 * 120.04849 * 180.27170 * 13 11 10 15 15 C 1.38649 * 119.89767 * 0.54851 * 13 11 10 16 16 C 1.38182 * 119.98666 * 359.72737 * 15 13 11 17 17 C 1.38349 * 119.99220 * 89.99921 * 10 9 7 18 18 Cl 1.73596 * 119.95173 * 0.02562 * 17 10 9 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 0.96698 * 114.00230 * 270.27265 * 14 13 11 23 23 H 1.08004 * 120.00638 * 179.70694 * 15 13 11 24 24 H 1.07995 * 119.95753 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6752 -4.1686 -1.2108 12 9 2.2320 -3.6545 -2.3789 13 6 3.5822 -5.2207 -1.2137 14 8 4.0256 -5.7342 -2.3921 15 6 4.0302 -5.7502 -0.0132 16 6 3.5786 -5.2274 1.1835 17 6 2.6795 -4.1756 1.1856 18 17 2.1139 -3.5219 2.6910 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 3.4824 -6.4567 -2.7355 23 1 4.7317 -6.5714 -0.0134 24 1 3.9275 -5.6405 2.1184 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214996432.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:56 Heat of formation + Delta-G solvation = -80.542249 kcal Electronic energy + Delta-G solvation = -13649.096058 eV Core-core repulsion = 10888.753713 eV Total energy + Delta-G solvation = -2760.342345 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.025 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.25560 -39.24737 -37.00314 -35.55086 -33.41982 -31.27900 -29.12189 -27.21709 -23.62883 -22.29873 -20.97820 -18.02321 -17.10840 -16.47268 -16.43635 -15.39482 -14.84924 -14.49578 -14.29174 -13.26427 -13.11774 -12.79592 -12.44646 -12.09441 -11.69791 -11.22261 -10.90686 -10.67537 -10.65986 -10.43976 -10.25720 -9.68584 -9.49113 -8.42706 -8.17905 -8.07798 -6.05414 -4.08549 1.25697 1.51637 2.65133 3.30629 3.37843 3.43082 3.70820 4.21964 4.45184 4.71021 5.08356 5.26762 5.34952 5.56791 5.93898 6.12422 6.26302 6.39234 6.54907 6.99633 7.45215 7.54703 7.72611 7.88332 8.22780 8.93312 9.54490 11.05076 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.010323 C = 0.008263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.328993 B = 2711.609453 C = 3387.645382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.045 3.955 10 C -0.050 4.050 11 C 0.082 3.918 12 F -0.123 7.123 13 C 0.068 3.932 14 O -0.489 6.489 15 C -0.134 4.134 16 C -0.110 4.110 17 C -0.022 4.022 18 Cl -0.051 7.051 19 H 0.262 0.738 20 H 0.048 0.952 21 H 0.036 0.964 22 H 0.386 0.614 23 H 0.138 0.862 24 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 -11.645 1.268 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.008 3.992 10 C -0.052 4.052 11 C 0.062 3.938 12 F -0.101 7.101 13 C 0.022 3.978 14 O -0.298 6.298 15 C -0.153 4.153 16 C -0.129 4.129 17 C -0.049 4.049 18 Cl -0.022 7.022 19 H 0.072 0.928 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.241 0.759 23 H 0.155 0.845 24 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.374 -11.019 1.413 12.341 hybrid contribution -0.003 0.728 -0.207 0.756 sum 5.371 -10.292 1.206 11.672 Atomic orbital electron populations 1.69958 1.05984 1.26766 1.50289 1.24937 0.94876 0.99143 0.94992 0.86470 0.80191 0.83414 0.77626 1.19622 1.20900 1.20872 1.20892 0.92850 0.89295 1.51348 0.92510 1.18458 0.92303 0.88622 0.99768 1.20633 0.98356 0.97030 0.89145 1.17784 0.97494 0.96400 0.82136 1.91494 1.87711 1.85895 1.44994 1.18473 0.97026 0.95920 0.86354 1.84874 1.54402 1.54815 1.35756 1.20949 1.02188 1.01737 0.90435 1.20871 0.97395 0.96175 0.98488 1.20568 0.99679 0.97007 0.87683 1.98355 1.88173 1.85734 1.29966 0.92838 0.93369 0.94609 0.75854 0.84457 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.60 14 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 14 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 14 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 14 5 H -0.28 -6.85 7.11 56.52 0.40 -6.44 14 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 14 7 C -0.51 -14.23 9.09 -34.44 -0.31 -14.54 14 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 14 9 C 0.05 1.17 4.53 -29.03 -0.13 1.03 14 10 C -0.05 -1.08 5.08 -104.54 -0.53 -1.61 14 11 C 0.08 1.67 7.25 -39.30 -0.28 1.38 14 12 F -0.12 -2.70 16.31 2.25 0.04 -2.66 14 13 C 0.07 1.13 6.71 -39.18 -0.26 0.86 14 14 O -0.49 -7.08 13.37 -19.66 -0.26 -7.34 14 15 C -0.13 -1.90 9.98 -39.45 -0.39 -2.30 14 16 C -0.11 -1.66 9.82 -39.56 -0.39 -2.04 14 17 C -0.02 -0.42 6.31 -39.49 -0.25 -0.67 14 18 Cl -0.05 -0.96 27.28 -51.86 -1.41 -2.37 14 19 H 0.26 7.29 8.31 -40.82 -0.34 6.96 14 20 H 0.05 1.28 6.90 -51.93 -0.36 0.92 14 21 H 0.04 0.99 7.63 -51.93 -0.40 0.59 14 22 H 0.39 3.50 9.06 45.56 0.41 3.91 14 23 H 0.14 1.49 8.06 -52.48 -0.42 1.07 14 24 H 0.14 1.61 8.06 -52.49 -0.42 1.19 14 LS Contribution 241.11 15.07 3.63 3.63 Total: -1.00 -31.18 241.11 -5.67 -36.85 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: -0.73 Total: -3.16 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.65 Total: -16.22 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.26 Total: -7.34 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.41 Total: -2.37 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.18 -5.67 -36.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214996432.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.689 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds