Wall clock time and date at job start Sun Mar 29 2020 21:41:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86794 * 120.00464 * 2 1
4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1
5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1
6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1
7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1
10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2
11 11 C 1.38338 * 119.98797 * 269.72177 * 10 9 7
12 12 F 1.35096 * 120.03962 * 359.97438 * 11 10 9
13 13 C 1.38902 * 119.91474 * 179.72928 * 11 10 9
14 14 O 1.35973 * 120.04849 * 180.27170 * 13 11 10
15 15 C 1.38649 * 119.89767 * 0.54851 * 13 11 10
16 16 C 1.38182 * 119.98666 * 359.72737 * 15 13 11
17 17 C 1.38349 * 119.99220 * 89.99921 * 10 9 7
18 18 Cl 1.73596 * 119.95173 * 0.02562 * 17 10 9
19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3
20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2
21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2
22 22 H 0.96698 * 114.00230 * 270.27265 * 14 13 11
23 23 H 1.08004 * 120.00638 * 179.70694 * 15 13 11
24 24 H 1.07995 * 119.95753 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3462 0.0006
5 1 1.8906 2.3963 -1.2126
6 1 1.8905 2.3965 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 -0.0054
10 6 2.2302 -3.6447 -0.0104
11 6 2.6752 -4.1686 -1.2108
12 9 2.2320 -3.6545 -2.3789
13 6 3.5822 -5.2207 -1.2137
14 8 4.0256 -5.7342 -2.3921
15 6 4.0302 -5.7502 -0.0132
16 6 3.5786 -5.2274 1.1835
17 6 2.6795 -4.1756 1.1856
18 17 2.1139 -3.5219 2.6910
19 1 -0.4850 0.8401 -0.0004
20 1 0.6242 -2.5609 0.8844
21 1 0.6244 -2.5529 -0.8956
22 1 3.4824 -6.4567 -2.7355
23 1 4.7317 -6.5714 -0.0134
24 1 3.9275 -5.6405 2.1184
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000214996432.mol2 24
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:41:56
Heat of formation + Delta-G solvation = -101.732755 kcal
Electronic energy + Delta-G solvation = -13650.014947 eV
Core-core repulsion = 10888.753713 eV
Total energy + Delta-G solvation = -2761.261235 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 230.025 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-49.84416 -40.57457 -38.31301 -36.95607 -35.38996 -33.02291 -30.48383 -29.03060
-25.52594 -23.65177 -22.55435 -19.31154 -18.63580 -18.48083 -17.90331 -16.90998
-16.53989 -16.14724 -15.67780 -14.74903 -14.59487 -14.52221 -14.09038 -13.77102
-13.27358 -13.01655 -12.72240 -12.52941 -12.16884 -12.04809 -11.78171 -11.56903
-11.30715 -10.61176 -9.67816 -9.47148 -8.22233 -6.33367 -0.07978 0.14034
1.23629 1.37127 1.37680 1.50703 2.32039 2.44688 2.98609 3.10689
3.39248 3.82063 4.00815 4.17294 4.60527 4.74550 4.99979 5.07022
5.13498 5.28405 5.54528 5.66303 5.69528 6.09846 6.71941 6.75339
7.33566 8.88355
Molecular weight = 230.03amu
Principal moments of inertia in cm(-1)
A = 0.025674 B = 0.010323 C = 0.008263
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1090.328993 B = 2711.609453 C = 3387.645382
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.009 3.991
3 Si 0.960 3.040
4 H -0.266 1.266
5 H -0.278 1.278
6 H -0.273 1.273
7 C -0.518 4.518
8 H 0.049 0.951
9 C 0.056 3.944
10 C -0.084 4.084
11 C 0.047 3.953
12 F -0.145 7.145
13 C 0.084 3.916
14 O -0.493 6.493
15 C -0.109 4.109
16 C -0.090 4.090
17 C -0.036 4.036
18 Cl -0.060 7.060
19 H 0.265 0.735
20 H 0.031 0.969
21 H -0.001 1.001
22 H 0.413 0.587
23 H 0.188 0.812
24 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.495 -13.181 1.786 15.268
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.189 4.189
3 Si 0.785 3.215
4 H -0.191 1.191
5 H -0.203 1.203
6 H -0.198 1.198
7 C -0.555 4.555
8 H 0.067 0.933
9 C 0.019 3.981
10 C -0.086 4.086
11 C 0.027 3.973
12 F -0.124 7.124
13 C 0.038 3.962
14 O -0.306 6.306
15 C -0.127 4.127
16 C -0.109 4.109
17 C -0.063 4.063
18 Cl -0.031 7.031
19 H 0.074 0.926
20 H 0.049 0.951
21 H 0.018 0.982
22 H 0.272 0.728
23 H 0.205 0.795
24 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges 7.712 -12.584 1.921 14.883
hybrid contribution -0.687 1.057 -0.407 1.325
sum 7.025 -11.527 1.515 13.583
Atomic orbital electron populations
1.70072 1.07483 1.27811 1.51216 1.25812 0.95740 1.02772 0.94584
0.85465 0.78984 0.79071 0.78002 1.19058 1.20321 1.19839 1.21150
0.92597 0.90816 1.50982 0.93271 1.18081 0.92727 0.90211 0.97053
1.20305 0.99564 0.97415 0.91321 1.18194 0.99658 0.98445 0.81007
1.91423 1.88342 1.86600 1.46008 1.18546 0.95151 0.94453 0.88082
1.84809 1.54736 1.55942 1.35146 1.21474 1.01072 1.01551 0.88596
1.21329 0.94952 0.93858 1.00731 1.20758 1.00879 0.98321 0.86332
1.98347 1.88501 1.86158 1.30091 0.92563 0.95103 0.98240 0.72784
0.79475 0.80619
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.46 13.29 21.45 0.28 -56.18 14
2 C 0.01 0.55 5.46 84.66 0.46 1.01 14
3 Si 0.96 45.44 29.54 68.60 2.03 47.47 14
4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 14
5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 14
6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 14
7 C -0.52 -30.11 9.09 25.60 0.23 -29.87 14
8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 14
9 C 0.06 3.06 4.53 29.10 0.13 3.19 14
10 C -0.08 -3.73 5.08 -19.81 -0.10 -3.83 14
11 C 0.05 1.91 7.25 22.45 0.16 2.08 14
12 F -0.15 -6.63 16.31 44.97 0.73 -5.89 14
13 C 0.08 2.54 6.71 22.53 0.15 2.69 14
14 O -0.49 -12.59 13.37 -93.25 -1.25 -13.84 14
15 C -0.11 -2.53 9.98 22.35 0.22 -2.30 14
16 C -0.09 -2.34 9.82 22.29 0.22 -2.12 14
17 C -0.04 -1.31 6.31 22.33 0.14 -1.17 14
18 Cl -0.06 -2.22 27.28 -2.72 -0.07 -2.29 14
19 H 0.27 15.15 8.31 -92.70 -0.77 14.37 14
20 H 0.03 1.73 6.90 -2.38 -0.02 1.72 14
21 H 0.00 -0.04 7.63 -2.39 -0.02 -0.06 14
22 H 0.41 5.97 9.06 -74.06 -0.67 5.30 14
23 H 0.19 2.62 8.06 -2.91 -0.02 2.60 14
24 H 0.18 3.17 8.06 -2.91 -0.02 3.15 14
Total: -1.00 -70.45 241.11 3.92 -66.53
By element:
Atomic # 1 Polarization: -6.02 SS G_CDS: 0.57 Total: -5.45 kcal
Atomic # 6 Polarization: -31.97 SS G_CDS: 1.62 Total: -30.34 kcal
Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.18 kcal
Atomic # 8 Polarization: -12.59 SS G_CDS: -1.25 Total: -13.84 kcal
Atomic # 9 Polarization: -6.63 SS G_CDS: 0.73 Total: -5.89 kcal
Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal
Atomic # 17 Polarization: -2.22 SS G_CDS: -0.07 Total: -2.29 kcal
Total: -70.45 3.92 -66.53 kcal
The number of atoms in the molecule is 24
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000214996432.mol2 24
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.206 kcal
(2) G-P(sol) polarization free energy of solvation -70.448 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.655 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.733 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds