Wall clock time and date at job start Sun Mar 29 2020 21:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38338 * 119.98797 * 269.72177 * 10 9 7 12 12 F 1.35096 * 120.03962 * 359.97438 * 11 10 9 13 13 C 1.38902 * 119.91474 * 179.72928 * 11 10 9 14 14 O 1.35973 * 120.04849 * 180.27170 * 13 11 10 15 15 C 1.38649 * 119.89767 * 0.54851 * 13 11 10 16 16 C 1.38182 * 119.98666 * 359.72737 * 15 13 11 17 17 C 1.38349 * 119.99220 * 89.99921 * 10 9 7 18 18 Cl 1.73596 * 119.95173 * 0.02562 * 17 10 9 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 0.96698 * 114.00230 * 270.27265 * 14 13 11 23 23 H 1.08004 * 120.00638 * 179.70694 * 15 13 11 24 24 H 1.07995 * 119.95753 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6752 -4.1686 -1.2108 12 9 2.2320 -3.6545 -2.3789 13 6 3.5822 -5.2207 -1.2137 14 8 4.0256 -5.7342 -2.3921 15 6 4.0302 -5.7502 -0.0132 16 6 3.5786 -5.2274 1.1835 17 6 2.6795 -4.1756 1.1856 18 17 2.1139 -3.5219 2.6910 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 3.4824 -6.4567 -2.7355 23 1 4.7317 -6.5714 -0.0134 24 1 3.9275 -5.6405 2.1184 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214996432.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:56 Heat of formation + Delta-G solvation = -101.732755 kcal Electronic energy + Delta-G solvation = -13650.014947 eV Core-core repulsion = 10888.753713 eV Total energy + Delta-G solvation = -2761.261235 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.025 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.84416 -40.57457 -38.31301 -36.95607 -35.38996 -33.02291 -30.48383 -29.03060 -25.52594 -23.65177 -22.55435 -19.31154 -18.63580 -18.48083 -17.90331 -16.90998 -16.53989 -16.14724 -15.67780 -14.74903 -14.59487 -14.52221 -14.09038 -13.77102 -13.27358 -13.01655 -12.72240 -12.52941 -12.16884 -12.04809 -11.78171 -11.56903 -11.30715 -10.61176 -9.67816 -9.47148 -8.22233 -6.33367 -0.07978 0.14034 1.23629 1.37127 1.37680 1.50703 2.32039 2.44688 2.98609 3.10689 3.39248 3.82063 4.00815 4.17294 4.60527 4.74550 4.99979 5.07022 5.13498 5.28405 5.54528 5.66303 5.69528 6.09846 6.71941 6.75339 7.33566 8.88355 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.010323 C = 0.008263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.328993 B = 2711.609453 C = 3387.645382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.049 0.951 9 C 0.056 3.944 10 C -0.084 4.084 11 C 0.047 3.953 12 F -0.145 7.145 13 C 0.084 3.916 14 O -0.493 6.493 15 C -0.109 4.109 16 C -0.090 4.090 17 C -0.036 4.036 18 Cl -0.060 7.060 19 H 0.265 0.735 20 H 0.031 0.969 21 H -0.001 1.001 22 H 0.413 0.587 23 H 0.188 0.812 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.495 -13.181 1.786 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.067 0.933 9 C 0.019 3.981 10 C -0.086 4.086 11 C 0.027 3.973 12 F -0.124 7.124 13 C 0.038 3.962 14 O -0.306 6.306 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.063 4.063 18 Cl -0.031 7.031 19 H 0.074 0.926 20 H 0.049 0.951 21 H 0.018 0.982 22 H 0.272 0.728 23 H 0.205 0.795 24 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.712 -12.584 1.921 14.883 hybrid contribution -0.687 1.057 -0.407 1.325 sum 7.025 -11.527 1.515 13.583 Atomic orbital electron populations 1.70072 1.07483 1.27811 1.51216 1.25812 0.95740 1.02772 0.94584 0.85465 0.78984 0.79071 0.78002 1.19058 1.20321 1.19839 1.21150 0.92597 0.90816 1.50982 0.93271 1.18081 0.92727 0.90211 0.97053 1.20305 0.99564 0.97415 0.91321 1.18194 0.99658 0.98445 0.81007 1.91423 1.88342 1.86600 1.46008 1.18546 0.95151 0.94453 0.88082 1.84809 1.54736 1.55942 1.35146 1.21474 1.01072 1.01551 0.88596 1.21329 0.94952 0.93858 1.00731 1.20758 1.00879 0.98321 0.86332 1.98347 1.88501 1.86158 1.30091 0.92563 0.95103 0.98240 0.72784 0.79475 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.18 14 2 C 0.01 0.55 5.46 84.66 0.46 1.01 14 3 Si 0.96 45.44 29.54 68.60 2.03 47.47 14 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 14 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 14 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 14 7 C -0.52 -30.11 9.09 25.60 0.23 -29.87 14 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 14 9 C 0.06 3.06 4.53 29.10 0.13 3.19 14 10 C -0.08 -3.73 5.08 -19.81 -0.10 -3.83 14 11 C 0.05 1.91 7.25 22.45 0.16 2.08 14 12 F -0.15 -6.63 16.31 44.97 0.73 -5.89 14 13 C 0.08 2.54 6.71 22.53 0.15 2.69 14 14 O -0.49 -12.59 13.37 -93.25 -1.25 -13.84 14 15 C -0.11 -2.53 9.98 22.35 0.22 -2.30 14 16 C -0.09 -2.34 9.82 22.29 0.22 -2.12 14 17 C -0.04 -1.31 6.31 22.33 0.14 -1.17 14 18 Cl -0.06 -2.22 27.28 -2.72 -0.07 -2.29 14 19 H 0.27 15.15 8.31 -92.70 -0.77 14.37 14 20 H 0.03 1.73 6.90 -2.38 -0.02 1.72 14 21 H 0.00 -0.04 7.63 -2.39 -0.02 -0.06 14 22 H 0.41 5.97 9.06 -74.06 -0.67 5.30 14 23 H 0.19 2.62 8.06 -2.91 -0.02 2.60 14 24 H 0.18 3.17 8.06 -2.91 -0.02 3.15 14 Total: -1.00 -70.45 241.11 3.92 -66.53 By element: Atomic # 1 Polarization: -6.02 SS G_CDS: 0.57 Total: -5.45 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 1.62 Total: -30.34 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -1.25 Total: -13.84 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.73 Total: -5.89 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.07 Total: -2.29 kcal Total: -70.45 3.92 -66.53 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214996432.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.206 kcal (2) G-P(sol) polarization free energy of solvation -70.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds