Wall clock time and date at job start Sun Mar 29 2020 21:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00564 * 2 1 4 4 H 1.48498 * 109.47127 * 270.00433 * 3 2 1 5 5 H 1.48499 * 109.46966 * 30.00171 * 3 2 1 6 6 H 1.48500 * 109.47320 * 150.00451 * 3 2 1 7 7 C 1.37882 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00149 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47211 * 300.00108 * 9 7 2 11 11 O 1.42906 * 109.47102 * 59.99956 * 9 7 2 12 12 C 1.52997 * 109.47265 * 180.02562 * 9 7 2 13 13 S 1.81402 * 109.47043 * 180.02562 * 12 9 7 14 14 C 1.76202 * 103.00103 * 179.97438 * 13 12 9 15 15 C 1.34174 * 125.24315 * 180.02562 * 14 13 12 16 16 C 1.38545 * 114.70752 * 179.73639 * 15 14 13 17 17 C 1.33235 * 114.99802 * 359.97438 * 16 15 14 18 18 S 1.75862 * 109.75047 * 0.02562 * 17 16 15 19 19 H 0.97006 * 119.99377 * 359.97438 * 1 2 3 20 20 H 0.96691 * 113.99952 * 60.00151 * 11 9 7 21 21 H 1.08994 * 109.47254 * 59.99809 * 12 9 7 22 22 H 1.09000 * 109.47002 * 299.99397 * 12 9 7 23 23 H 1.08003 * 122.64342 * 359.71055 * 15 14 13 24 24 H 1.08000 * 122.50414 * 180.02562 * 16 15 14 25 25 H 1.08003 * 125.12649 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6245 -2.5571 0.8897 11 8 0.4288 -2.5746 -1.1670 12 6 2.2451 -3.6622 -0.0005 13 16 1.3379 -5.2331 -0.0013 14 6 2.6265 -6.4349 -0.0020 15 6 2.4453 -7.7644 -0.0031 16 6 3.6141 -8.5081 -0.0093 17 6 4.7374 -7.7916 -0.0136 18 16 4.3483 -6.0766 -0.0092 19 1 -0.4849 0.8401 0.0004 20 1 0.9206 -2.5291 -1.9983 21 1 2.8717 -3.6045 0.8894 22 1 2.8716 -3.6045 -0.8906 23 1 1.4655 -8.2188 0.0008 24 1 3.6148 -9.5881 -0.0112 25 1 5.7364 -8.2021 -0.0182 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219753748.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:45 Heat of formation + Delta-G solvation = -24.521958 kcal Electronic energy + Delta-G solvation = -11376.469979 eV Core-core repulsion = 9186.813738 eV Total energy + Delta-G solvation = -2189.656241 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 230.018 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.40318 -35.98412 -32.24810 -29.92773 -29.35412 -25.50695 -23.98213 -21.34505 -19.22868 -18.16793 -17.26009 -15.65218 -14.76444 -14.72118 -14.48236 -14.24856 -13.38299 -13.09603 -12.81950 -12.35185 -12.08809 -11.62901 -11.26170 -10.97151 -10.92996 -10.78104 -10.20871 -9.77648 -9.49252 -9.23902 -8.70029 -8.40537 -8.37691 -6.96417 -6.12949 -4.33582 1.05110 1.57320 1.75324 2.19033 2.82556 3.07008 3.21958 3.29404 3.31984 4.30457 5.12286 5.14139 5.41677 5.65931 5.66674 5.83801 6.09979 6.14306 6.30757 6.51448 6.52891 7.47934 7.69425 7.96200 8.67549 9.22527 9.43191 10.91081 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.052845 B = 0.006318 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.728232 B = 4430.802423 C = 4874.135796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.572 4.572 8 H 0.059 0.941 9 C 0.248 3.752 10 H 0.068 0.932 11 O -0.557 6.557 12 C -0.130 4.130 13 S -0.048 6.048 14 C -0.181 4.181 15 C -0.144 4.144 16 C -0.115 4.115 17 C -0.232 4.232 18 S 0.104 5.896 19 H 0.263 0.737 20 H 0.348 0.652 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.140 0.860 24 H 0.138 0.862 25 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.247 -12.257 -0.339 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.612 4.612 8 H 0.078 0.922 9 C 0.188 3.812 10 H 0.085 0.915 11 O -0.359 6.359 12 C -0.280 4.280 13 S 0.195 5.805 14 C -0.410 4.410 15 C -0.182 4.182 16 C -0.147 4.147 17 C -0.372 4.372 18 S 0.362 5.638 19 H 0.073 0.927 20 H 0.192 0.808 21 H 0.103 0.897 22 H 0.098 0.902 23 H 0.158 0.842 24 H 0.156 0.844 25 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.207 -10.942 0.129 12.581 hybrid contribution 1.663 -0.244 -0.337 1.714 sum 7.870 -11.186 -0.209 13.679 Atomic orbital electron populations 1.70077 1.05981 1.26843 1.46060 1.25036 0.94778 0.99262 0.93522 0.86565 0.79894 0.82981 0.78342 1.20367 1.20943 1.19714 1.21488 0.93233 0.90515 1.55977 0.92241 1.19176 0.87362 0.87560 0.87089 0.91467 1.86605 1.38028 1.96027 1.15261 1.25055 1.03654 0.94398 1.04852 1.85749 1.07294 0.97140 1.90273 1.26644 1.00746 1.02240 1.11419 1.19877 0.99864 0.90904 1.07581 1.20071 0.91104 1.00765 1.02807 1.25468 1.02535 0.96101 1.13058 1.84512 0.98491 1.06624 1.74162 0.92675 0.80782 0.89714 0.90243 0.84188 0.84414 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.67 12.84 55.43 0.71 -23.96 15 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 15 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 15 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.57 -15.20 8.76 -34.44 -0.30 -15.50 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.25 6.12 2.87 -27.88 -0.08 6.03 15 10 H 0.07 1.83 8.14 -51.93 -0.42 1.41 15 11 O -0.56 -14.00 12.33 -35.23 -0.43 -14.44 15 12 C -0.13 -2.64 4.66 37.16 0.17 -2.47 15 13 S -0.05 -0.90 21.72 -107.50 -2.34 -3.24 15 14 C -0.18 -2.96 6.69 29.30 0.20 -2.76 15 15 C -0.14 -2.07 10.13 -40.90 -0.41 -2.48 15 16 C -0.12 -1.41 10.17 -41.21 -0.42 -1.83 15 17 C -0.23 -2.84 11.21 28.99 0.32 -2.51 15 18 S 0.10 1.52 22.32 -107.50 -2.40 -0.88 15 19 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 20 H 0.35 7.76 9.04 45.56 0.41 8.17 15 21 H 0.08 1.67 8.14 -51.93 -0.42 1.25 15 22 H 0.08 1.55 8.14 -51.92 -0.42 1.13 15 23 H 0.14 1.82 8.06 -52.48 -0.42 1.40 15 24 H 0.14 1.28 8.06 -52.49 -0.42 0.86 15 25 H 0.16 1.50 8.06 -52.48 -0.42 1.07 15 LS Contribution 253.65 15.07 3.82 3.82 Total: -1.00 -29.09 253.65 -7.94 -37.03 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -1.67 Total: 5.47 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.62 Total: -19.40 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.71 Total: -23.96 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.43 Total: -14.44 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -4.73 Total: -4.12 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.09 -7.94 -37.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219753748.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.511 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds